![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Csor.00g284830 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglestart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCAAGAGAAATTCGGTTACTTGGAATGCTCTGATTATTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCAGAGGAATGCTGGCAGCTGGGACTGAACCGAGTGAAAGAACCGCGGTGGTAGTTCTATTGGCTTGTTCTCATTTGGGAGCTTTAGATCAGGGAAAGTGGAACTATGGATTTATATATCAGAATAATTTGAGACTGAACGTGTTTGTGGGCACAGCACTCACTGATATGTATGCTAAATGTGGGGCTGTGATGAGGCAAAGAAGGTCTTTGAAGAAATTGGAGAGAAGAACATCTGTACATGGAATGTCTTGA ATGCCCAAGAGAAATTCGGTTACTTGGAATGCTCTGATTATTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCAGAGGAATGCTGGCAGCTGGGACTGAACCGAGTGAAAGAACCGCGGTGGTAGTTCTATTGGCTTGTTCTCATTTGGGAGCTTTAGATCAGGGAAAGTGGAACTATGGATTTATATATCAGAATAATTTGAGACTGAACGTGTTTGTGGGCACAGCACTCACTGATATGTATGCTAAATGTGGGGCTGTGATGAGGCAAAGAAGGTCTTTGAAGAAATTGGAGAGAAGAACATCTGTACATGGAATGTCTTGA ATGCCCAAGAGAAATTCGGTTACTTGGAATGCTCTGATTATTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCAGAGGAATGCTGGCAGCTGGGACTGAACCGAGTGAAAGAACCGCGGTGGTAGTTCTATTGGCTTGTTCTCATTTGGGAGCTTTAGATCAGGGAAAGTGGAACTATGGATTTATATATCAGAATAATTTGAGACTGAACGTGTTTGTGGGCACAGCACTCACTGATATGTATGCTAAATGTGGGGCTGTGATGAGGCAAAGAAGGTCTTTGAAGAAATTGGAGAGAAGAACATCTGTACATGGAATGTCTTGA MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALDQGKWNYGFIYQNNLRLNVFVGTALTDMYAKCGAVMRQRRSLKKLERRTSVHGMS Homology
BLAST of Csor.00g284830 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18 Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18 Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy Swiss-Prot
Match: Q9C866 (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17 Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2) HSP 1 Score: 88.6 bits (218), Expect = 4.9e-17 Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 8.4e-17 Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 0
BLAST of Csor.00g284830 vs. NCBI nr
Match: KAG6589528.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 230 bits (586), Expect = 4.36e-76 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Csor.00g284830 vs. NCBI nr
Match: KAG7023213.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 226 bits (576), Expect = 1.46e-74 Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Csor.00g284830 vs. NCBI nr
Match: XP_022134759.1 (pentatricopeptide repeat-containing protein At4g21065-like [Momordica charantia]) HSP 1 Score: 167 bits (422), Expect = 7.38e-46 Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Csor.00g284830 vs. NCBI nr
Match: KAG6587565.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 166 bits (419), Expect = 7.60e-46 Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0
BLAST of Csor.00g284830 vs. NCBI nr
Match: XP_022925029.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata]) HSP 1 Score: 166 bits (420), Expect = 9.68e-46 Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy TrEMBL
Match: A0A6J1BZP4 (pentatricopeptide repeat-containing protein At4g21065-like OS=Momordica charantia OX=3673 GN=LOC111006955 PE=3 SV=1) HSP 1 Score: 167 bits (422), Expect = 3.57e-46 Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy TrEMBL
Match: A0A6J1EAY2 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita moschata OX=3662 GN=LOC111432395 PE=3 SV=1) HSP 1 Score: 166 bits (420), Expect = 4.69e-46 Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy TrEMBL
Match: A0A6J1KY52 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima OX=3661 GN=LOC111497411 PE=3 SV=1) HSP 1 Score: 165 bits (418), Expect = 5.13e-46 Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy TrEMBL
Match: A0A1S4DZH3 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucumis melo OX=3656 GN=LOC103494017 PE=3 SV=1) HSP 1 Score: 159 bits (401), Expect = 1.30e-43 Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 0
BLAST of Csor.00g284830 vs. ExPASy TrEMBL
Match: A0A5A7US40 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002740 PE=3 SV=1) HSP 1 Score: 159 bits (401), Expect = 1.45e-43 Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 0
BLAST of Csor.00g284830 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 94.0 bits (232), Expect = 8.3e-20 Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of Csor.00g284830 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19 Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 0
BLAST of Csor.00g284830 vs. TAIR 10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18 Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 0
BLAST of Csor.00g284830 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 88.6 bits (218), Expect = 3.5e-18 Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Csor.00g284830 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 87.8 bits (216), Expect = 6.0e-18 Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|