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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGGGAACCCAGTTCATACGGCAGAACAATTCGCAGTCTTGTGCGCGCAAATTTCCCACTAAGAACACAAGAATCAAATAACAGAGACAAAAGGACCTCAGCCTCCACAAACCCTGAAACAATCCAAACTAAATGGAAGATAGACCACCAAACACAAGGAAATTGACACGTAGAATATTGAAACAGATAAATAAGGAAAAAGAAAAAAAGAACACTCACAAATCCAGCGGGGTCAGACTGCGGAACGACCCAATTATGAGAAGCAACAGTTGGGTCAGCATAAAATTGCGGTTGGCCCTCCAATCCAACATAGGTCGAGGTTAATATGGCGGAATTGGAATAAGGTTCGGTGCCGGGAGGGTGCAGGACCGGCTCGGAAGCGACTCCGGGGGGTAAAACAGGCTGAGGAAAATGAGCGAAAGAAGAAGGATTACCATTCACAATGTGAGGCTGAGGAGGGAAATAAAAAGGCACGGAAGAAGAAGAAGAAGAGGAAGGAGGAGGAGGAGGGTGCTGCTGCTGATGGAACATCAGGACGGAGGAATAGAAGGAAAAACGAAGCAGAAATCCAGTTTAGGATCAGAACTAGAACTCCCAACTTCCGATTCTCAAGTCTCTCCAACACGGTGGAGATTGCGATGGAACTCGTCGCCTCTCCTCGCCTCGCGCCGGGAAGATTTTGCATAGCGTTCGTGGATCGTGGACTACGAAACCGATAA mRNA sequence ATGAGGGAACCCAGTTCATACGGCAGAACAATTCGCAGTCTTCGGGGTCAGACTGCGGAACGACCCAATTATGAGAAGCAACAGTTGGGTCAGCATAAAATTGCGGTTGGCCCTCCAATCCAACATAGGTCGAGGTTAATATGGCGGAATTGGAATAAGGTTCGGTGCCGGGAGGGTGCAGGACCGGCTCGGAAGCGACTCCGGGGGGTAAAACAGGCTGAGGAAAATGAGCGAAAGAAGAAGGATTACCATTCACAATGTGAGGCTGAGGAGGGAAATAAAAAGGCACGGAAGAAGAAGAAGAAGAGGAAGGAGGAGGAGGAGGGTGCTGCTGCTGATGGAACATCAGGACGGAGGAATAGAAGGAAAAACGAAGCAGAAATCCAGTTTAGGATCAGAACTAGAACTCCCAACTTCCGATTCTCAAGTCTCTCCAACACGGTGGAGATTGCGATGGAACTCGTCGCCTCTCCTCGCCTCGCGCCGGGAAGATTTTGCATAGCGTTCGTGGATCGTGGACTACGAAACCGATAA Coding sequence (CDS) ATGAGGGAACCCAGTTCATACGGCAGAACAATTCGCAGTCTTCGGGGTCAGACTGCGGAACGACCCAATTATGAGAAGCAACAGTTGGGTCAGCATAAAATTGCGGTTGGCCCTCCAATCCAACATAGGTCGAGGTTAATATGGCGGAATTGGAATAAGGTTCGGTGCCGGGAGGGTGCAGGACCGGCTCGGAAGCGACTCCGGGGGGTAAAACAGGCTGAGGAAAATGAGCGAAAGAAGAAGGATTACCATTCACAATGTGAGGCTGAGGAGGGAAATAAAAAGGCACGGAAGAAGAAGAAGAAGAGGAAGGAGGAGGAGGAGGGTGCTGCTGCTGATGGAACATCAGGACGGAGGAATAGAAGGAAAAACGAAGCAGAAATCCAGTTTAGGATCAGAACTAGAACTCCCAACTTCCGATTCTCAAGTCTCTCCAACACGGTGGAGATTGCGATGGAACTCGTCGCCTCTCCTCGCCTCGCGCCGGGAAGATTTTGCATAGCGTTCGTGGATCGTGGACTACGAAACCGATAA Protein sequence MREPSSYGRTIRSLRGQTAERPNYEKQQLGQHKIAVGPPIQHRSRLIWRNWNKVRCREGAGPARKRLRGVKQAEENERKKKDYHSQCEAEEGNKKARKKKKKRKEEEEGAAADGTSGRRNRRKNEAEIQFRIRTRTPNFRFSSLSNTVEIAMELVASPRLAPGRFCIAFVDRGLRNR
Homology
BLAST of Csor.00g284770 vs. NCBI nr
Match: KAG6589534.1 (hypothetical protein SDJN03_14957, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 339 bits (869), Expect = 3.94e-117 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 Query: 1 MREPSSYGRTIRSLRGQTAERPNYEKQQLGQHKIAVGPPIQHRSRLIWRNWNKVRCREGA 60 MREPSSYGRTIRSLRGQTAERPNYEKQQLGQHKIAVGPPIQHRSRLIWRNWNKVRCREGA Sbjct: 1 MREPSSYGRTIRSLRGQTAERPNYEKQQLGQHKIAVGPPIQHRSRLIWRNWNKVRCREGA 60
Query: 61 GPARKRLRGVKQAEENERKKKDYHSQCEAEEGNKKARKKKKKRKEEEEGAAADGTSGRRN 120 GPARKRLRGVKQAEENERKKKDYHSQCEAEEGNKKARKKKKKRKEEEEGAAADGTSGRRN Sbjct: 61 GPARKRLRGVKQAEENERKKKDYHSQCEAEEGNKKARKKKKKRKEEEEGAAADGTSGRRN 120
Query: 121 RRKNEAEIQFRIRTRTPNFRFSSLSNTVEIAMELVASPRLAPGRFCIAFVDRGLRNR 177 RRKNEAEIQFRIRTRTPNFRFSSLSNTVEIAMELVASPRLAPGRFCIAFVDRGLRNR Sbjct: 121 RRKNEAEIQFRIRTRTPNFRFSSLSNTVEIAMELVASPRLAPGRFCIAFVDRGLRNR 177
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6589534.1 | 3.94e-117 | 100.00 | hypothetical protein SDJN03_14957, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 87..107 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 60..95 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 60..127 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 102..127 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..37 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 10..25 |
Relationships
The following mRNA feature(s) are a part of this gene:
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