Csor.00g282660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g282660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	arabinogalactan peptide 22-like
Location	Csor_Chr16: 328197 .. 328509 (+)
RNA-Seq Expression	Csor.00g282660
Synteny	Csor.00g282660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTTTGAGAGATTGTCTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGTTACTTCTCTCTTCTTCCTGCTTTTCTGTTTATTGCTTCAATACAAAACAAAATCTACTCTTTCTCTTATTCTGCTAATAAGACTTGCGATTGCATATGTTGCAGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA

mRNA sequence

ATGGGTGTTTTGAGAGATTGTCTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA

Coding sequence (CDS)

ATGGGTGTTTTGAGAGATTGTCTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA

Protein sequence

MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH

Homology

[Close]

BLAST of Csor.00g282660 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-11
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 12 AVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + I+++++ ++LP++    H+   APAPAPTSDGTTIDQGIAY+LML+AL LTY+IH
Sbjct: 11 STIVSIIFAILLPMA----HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Csor.00g282660 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-10
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  L+  L I AV + ++ V++LP+  A  HSS  +PAPAPTSDGT+IDQGIAY+LM++A
Sbjct: 1  MASLKFPLEILAVFV-IISVILLPI--AQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVA 60

Query: 61 LALTYIIH 69
          LALTY IH
Sbjct: 61 LALTYFIH 63

[Close]

BLAST of Csor.00g282660 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-07
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 14 IIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + + V+ V+L ++ A       APAPAPTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQS----LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Csor.00g282660 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-07
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 14 IIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + A V+ V+ P + A       APAP+PTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFAFVFAVISPFAGAQS----LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Csor.00g282660 vs. NCBI nr
Match: KAG6576674.1 (Arabinogalactan protein 22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (316), Expect = 2.91e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA
Sbjct: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 61 LALTYIIH 68

[Close]

BLAST of Csor.00g282660 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 100 bits (250), Expect = 5.81e-26
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  LR C G+YAVIIA+ YVVMLPVS A EH+S PAPAPAPTSDGT IDQGIAYILMLLA
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRA-EHASSPAPAPAPTSDGTAIDQGIAYILMLLA 80

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 81 LALTYIIH 87

[Close]

BLAST of Csor.00g282660 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 100 bits (250), Expect = 6.69e-26
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  LR C G+YAVIIA+ YVVMLPVS A EH+S PAPAPAPTSDGT IDQGIAYILMLLA
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRA-EHASSPAPAPAPTSDGTAIDQGIAYILMLLA 85

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 86 LALTYIIH 92

[Close]

BLAST of Csor.00g282660 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 4.34e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M VLR C GIYAVIIA+ YVVMLPVS A EH+S  +PAPAPTSDGT IDQGIAYILMLLA
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRA-EHAS--SPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Csor.00g282660 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 4.88e-21
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M V R C GIYA IIA+++V++LPVS A EHSS  +PAPAP+SDGTTIDQGIAYILMLLA
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRA-EHSS--SPAPAPSSDGTTIDQGIAYILMLLA 60

Query: 61 LALTYIIH 68
          L LTYIIH
Sbjct: 61 LVLTYIIH 65

[Close]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL
Match: A0A6J1HT15 (arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 2.81e-26
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  LR C G+YAVIIA+ YVVMLPVS A EH+S PAPAPAPTSDGT IDQGIAYILMLLA
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRA-EHASSPAPAPAPTSDGTAIDQGIAYILMLLA 80

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 81 LALTYIIH 87

[Close]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL
Match: A0A6J1HU96 (arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 3.24e-26
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  LR C G+YAVIIA+ YVVMLPVS A EH+S PAPAPAPTSDGT IDQGIAYILMLLA
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRA-EHASSPAPAPAPTSDGTAIDQGIAYILMLLA 85

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 86 LALTYIIH 92

[Close]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.10e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M VLR C GIYAVIIA+ YVVMLPVS A EH+S  +PAPAPTSDGT IDQGIAYILMLLA
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRA-EHAS--SPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LALTYIIH 68
          LALTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.36e-21
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M V R C GIYA IIA+++V++LPVS A EHSS  +PAPAP+SDGTTIDQGIAYILMLLA
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRA-EHSS--SPAPAPSSDGTTIDQGIAYILMLLA 60

Query: 61 LALTYIIH 68
          L LTYIIH
Sbjct: 61 LVLTYIIH 65

[Close]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL
Match: A0A0A0L7T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.56e-20
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MGVLR-DCLGIYA-VIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILML 60
          M VLR  C GIYA ++IAV YVV LP+S+A   SS PAPAPAPTSDGT IDQGIAY+LML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60

Query: 61 LALALTYIIH 68
          +AL LTYIIH
Sbjct: 61 VALVLTYIIH 70

[Close]

BLAST of Csor.00g282660 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-12
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 12 AVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + I+++++ ++LP++    H+   APAPAPTSDGTTIDQGIAY+LML+AL LTY+IH
Sbjct: 11 STIVSIIFAILLPMA----HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Csor.00g282660 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 63.9 bits (154), Expect = 5.6e-11
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MGVLRDCLGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLA 60
          M  L+  L I AV + ++ V++LP+  A  HSS  +PAPAPTSDGT+IDQGIAY+LM++A
Sbjct: 1  MASLKFPLEILAVFV-IISVILLPI--AQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVA 60

Query: 61 LALTYIIH 69
          LALTY IH
Sbjct: 61 LALTYFIH 63

[Close]

BLAST of Csor.00g282660 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 14 IIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + + V+ V+L ++ A       APAPAPTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQS----LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Csor.00g282660 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 14 IIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH 69
          + A V+ V+ P + A       APAP+PTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFAFVFAVISPFAGAQS----LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Csor.00g282660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	7.1e-11	57.89	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	7.9e-10	58.82	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
O82337	2.8e-07	56.36	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	2.8e-07	56.36	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of Csor.00g282660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576674.1	2.91e-36	100.00	Arabinogalactan protein 22, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022968217.1	5.81e-26	82.35	arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]	[more]
XP_022968216.1	6.69e-26	82.35	arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]	[more]
XP_022945187.1	4.34e-24	82.35	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]
XP_022140891.1	4.88e-21	75.00	arabinogalactan peptide 22-like [Momordica charantia]	[more]

BLAST of Csor.00g282660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HT15	2.81e-26	82.35	arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HU96	3.24e-26	82.35	arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1G081	2.10e-24	82.35	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]
A0A6J1CHE0	2.36e-21	75.00	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 P...	[more]
A0A0A0L7T5	1.56e-20	72.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1	[more]

BLAST of Csor.00g282660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	5.1e-12	57.89	arabinogalactan protein 41	[more]
AT5G53250.1	5.6e-11	58.82	arabinogalactan protein 22	[more]
AT2G46330.1	2.0e-08	56.36	arabinogalactan protein 16	[more]
AT3G61640.1	2.0e-08	56.36	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 36..68 e-value: 2.6E-18 score: 65.6
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 3..68
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 3..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g282660.m01	Csor.00g282660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane