Csor.00g280630 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g280630
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	Csor_Chr19: 10677095 .. 10677901 (-)
RNA-Seq Expression	Csor.00g280630
Synteny	Csor.00g280630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTCAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGTTGGCCCTGCCTTTATAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGTGTGGAGCAGTAGCCCAAGGATCAGAAGGCATATTTTGCAAACGGATGAATCACTCAACAGAATCTGTATTTTTCTTTTCTGTTTCTTAGTTATCTGTCTTCTTTTGTTCTAAGCCATAGATTTTCCCTTTACTCTCTAATCCATTGTAAAAATTTTGAGTCAGAAGAACACTTAAAAATGATATGCAGATTGTGTTATGTAGGCGTGGCTGAGCGTTGGTGGCGATGTTGCCCCTTGGCTCGCCCTTATGTAG

mRNA sequence

ATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTCAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGTTGGCCCTGCCTTTATAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGCGTGGCTGAGCGTTGGTGGCGATGTTGCCCCTTGGCTCGCCCTTATGTAG

Coding sequence (CDS)

ATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTCAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGTTGGCCCTGCCTTTATAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGCGTGGCTGAGCGTTGGTGGCGATGTTGCCCCTTGGCTCGCCCTTATGTAG

Protein sequence

MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPNAYPLAWLSVGGDVAPWLALM

Homology

[Close]

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-41
Identity = 89/196 (45.41%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 12  WKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHG 71
           WKS+ D + +   + SG FDCNICL+ V +PV+TLCGHL+CWPC+YKW++FQ  S E   
Sbjct: 24  WKSMNDEVEE---NISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSD 83

Query: 72  RRLQQCPVCKAEVSDATLVPLYGKGG-TQDPFESKNSQLGIVVPRRPNGPAC---FELPT 131
           ++  QCPVCKAEVS+ TL+PLYG+GG +  P E K   LGIV+P+RP  P C   F LPT
Sbjct: 84  QQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPT 143

Query: 132 PTSHPT-----------SHPVPQSRQGNSSNQSNICYAQVT------GVFGEVVYARMFG 186
             S+P+           S     + QG+  +   +     T       + GEV YAR+FG
Sbjct: 144 TDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQHSMIGEVAYARIFG 203

[Close]

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-30
Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 30  FDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATL 89
           FDCNICL++V++PVVTLCGHLFCWPC++KWL  Q  S     +R +QCPVCK++VS +TL
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 90  VPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTS--------------- 149
           VPLYG+G      E KNS     VP+RP GP  + L  P S   S               
Sbjct: 106 VPLYGRGRCTTQEEGKNS-----VPKRPVGPV-YRLEMPNSPYASTDLRLSQRVHFNSPQ 165

Query: 150 ---HPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGA-ITNLYAYPNAYPLAWLS 189
              +PV      NS + S +    V  + GE+V  R+FG  + + +AYP+ Y LA  S
Sbjct: 166 EGYYPVSGVMSSNSLSYSAV-LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTS 216

[Close]

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-29
Identity = 79/186 (42.47%), Postives = 99/186 (53.23%), Query Frame = 0


Query: 20  ADTHGDA--SGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQC 79
           A T G A  SG FDCNICL+T  DPVVTLCGHLFCWPC+YKWLH Q SS     +    C
Sbjct: 30  APTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSV-DQHQNNC 89

Query: 80  PVCKAEVSDATLVPLYGKG--GTQDPFESKNSQ-LGIVVPRRPNGPACFELPT------- 139
           PVCK+ ++  +LVPLYG+G       F SK    L   +PRRP  P+    P        
Sbjct: 90  PVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSASSLN 149

Query: 140 -----PTSHPTSHPVPQSRQGNSSNQS---------NICYAQVTGVFGEVVYARMFGAIT 180
                 T  P+ H    S +G ++ +S         +  Y  V G+FG++VY R+FG  T
Sbjct: 150 PSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLY-PVIGMFGDLVYTRIFGTFT 209

[Close]

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 65/151 (43.05%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 25  DASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEK-----HGRRLQQCPV 84
           D+ G FDCNICL+ V+DPVVTLCGHLFCWPC++KW +  ++S+++     H R   +CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 85  CKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTSHPVPQ 144
           CK++VS+ATLVP+YG+G        K  Q G  VP RP GP          +       +
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRPTGPV---------YDLRGVGQR 133

Query: 145 SRQGNSSNQSNICYAQVTGVFGEVVYARMFG 171
             +G S          V GV  E+VY R+FG
Sbjct: 134 LGEGESQRYMYRMPDPVMGVVCEMVYRRLFG 148

[Close]

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot
Match: Q96GF1 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 20  ADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPV 79
           A   G     F+CNICL+T KD V++LCGHLFCWPCL++WL  + +         Q CPV
Sbjct: 27  AGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR--------QVCPV 86

Query: 80  CKAEVSDATLVPLYGKG--GTQDPFESKNSQLGIVVPRRPNG 120
           CKA +S   ++PLYG+G  G QDP E          P RP G
Sbjct: 87  CKAGISRDKVIPLYGRGSTGQQDPREK--------TPPRPQG 112

[Close]

BLAST of Csor.00g280630 vs. NCBI nr
Match: KAG6572360.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 432 bits (1110), Expect = 4.03e-153
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
           ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAWLSVGGDVAPWLALM 200
           AYPLAWLSVGGDVAPWLALM
Sbjct: 181 AYPLAWLSVGGDVAPWLALM 200

[Close]

BLAST of Csor.00g280630 vs. NCBI nr
Match: XP_023554609.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554610.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554611.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554612.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >KAG7011971.1 E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403 bits (1035), Expect = 2.35e-141
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
           ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAWLS 188
           AYPL W S
Sbjct: 181 AYPLVWSS 188

[Close]

BLAST of Csor.00g280630 vs. NCBI nr
Match: XP_022969255.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969256.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969257.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969258.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 394 bits (1011), Expect = 1.07e-137
Identity = 181/188 (96.28%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSW SV+DAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWTSVVDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
            CFELP P SHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 VCFELPKPASHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAWLS 188
           AYPL W S
Sbjct: 181 AYPLVWSS 188

[Close]

BLAST of Csor.00g280630 vs. NCBI nr
Match: XP_022952773.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952774.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952775.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952776.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 393 bits (1009), Expect = 2.16e-137
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRP+GP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPSGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
            CF+LP P SHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 VCFDLPKPASHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAW 186
           AYPL W
Sbjct: 181 AYPLVW 186

[Close]

BLAST of Csor.00g280630 vs. NCBI nr
Match: XP_038888270.1 (E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida])

HSP 1 Score: 337 bits (863), Expect = 6.95e-115
Identity = 159/194 (81.96%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   MEINSFGENKS----WKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCL 60
           ++INSFGENKS    WKSVLDAMA+TH DASGLFDCNICLETVKDPVVTLCGHLFCWPC+
Sbjct: 12  IQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCI 71

Query: 61  YKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRR 120
           YKWLH+QDSS EK  RRL QCPVCKAEVSDATLVPLYGKG T+D FESKN+QLGIVVPRR
Sbjct: 72  YKWLHYQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESKNTQLGIVVPRR 131

Query: 121 PNGPACFELPTPTSHPTSHPVPQSRQGNS--SNQSNICYAQVTGVFGEVVYARMFGAITN 180
           P+GPACFE P PTSHPTSH VPQ RQGNS  S+QSN+ YA++TG FGEVVYARM GAITN
Sbjct: 132 PHGPACFESPRPTSHPTSHTVPQYRQGNSDSSDQSNVYYAEMTGAFGEVVYARMSGAITN 191

Query: 181 LYAYPNAYPLAWLS 188
           LYAYPN+YPL W S
Sbjct: 192 LYAYPNSYPLVWSS 205

[Close]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL
Match: A0A6J1HXA9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111468313 PE=4 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 5.19e-138
Identity = 181/188 (96.28%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSW SV+DAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWTSVVDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
            CFELP P SHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 VCFELPKPASHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAWLS 188
           AYPL W S
Sbjct: 181 AYPLVWSS 188

[Close]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL
Match: A0A6J1GLI9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111455370 PE=4 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 1.05e-137
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60
           MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL
Sbjct: 1   MEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWL 60

Query: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGP 120
           HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRP+GP
Sbjct: 61  HFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPSGP 120

Query: 121 ACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180
            CF+LP P SHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN
Sbjct: 121 VCFDLPKPASHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPN 180

Query: 181 AYPLAW 186
           AYPL W
Sbjct: 181 AYPLVW 186

[Close]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL
Match: A0A0A0K717 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047460 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 1.42e-114
Identity = 162/207 (78.26%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MEINSFGENKS----WKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCL 60
           ++INSFGENKS    WKSVLDAMA+TH DASGLFDCNICLETVKDPVVTLCGHLFCWPC+
Sbjct: 12  IQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCI 71

Query: 61  YKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRR 120
           YKW+H+QDSS EK  RRL QCPVCKAEVSDATLVPLYGKG TQDPFESKN QLGIVVPRR
Sbjct: 72  YKWIHYQDSSLEKKARRLPQCPVCKAEVSDATLVPLYGKGETQDPFESKNPQLGIVVPRR 131

Query: 121 PNGPACFELPTPTSHPTSHPV-PQSRQGNS--SNQSNICYAQVTGVFGEVVYARMFGAIT 180
           P GPACFE P PTSHPTSH V PQ R+GNS  ++QSN+ YA++TGVFGEVVYARM GAIT
Sbjct: 132 PQGPACFESPRPTSHPTSHTVGPQFREGNSDSADQSNVYYAEMTGVFGEVVYARMSGAIT 191

Query: 181 NLYAYPNAYPLAWLSVGGDVAPWLALM 200
           NLYAYPN+YPL W  +     P LAL+
Sbjct: 192 NLYAYPNSYPLVWSMLVAIGRPLLALV 218

[Close]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL
Match: A0A1S3C1W7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 6.70e-113
Identity = 159/195 (81.54%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MEINSFGENKS----WKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCL 60
           ++INSFGENKS    WKSVLDAMA+TH DASGLFDCNICLETVKDPVVTLCGHLFCWPC+
Sbjct: 12  IQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCI 71

Query: 61  YKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRR 120
           YKW+HFQDSS EK  RRL QCPVCKAEVSDATLVPLYGKG TQ+P ESKN QLGIVVPRR
Sbjct: 72  YKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESKNPQLGIVVPRR 131

Query: 121 PNGPACFELPTPTSHPTSHPV-PQSRQGNS--SNQSNICYAQVTGVFGEVVYARMFGAIT 180
           P GPACFE P PTSHPTSH V PQ R+G+S  S+QSN+ YAQVTG FGEVVYARM GAIT
Sbjct: 132 PQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGEVVYARMSGAIT 191

Query: 181 NLYAYPNAYPLAWLS 188
           NLYAYPN+YPL W S
Sbjct: 192 NLYAYPNSYPLVWSS 206

[Close]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL
Match: A0A5A7SLT9 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003470 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 6.70e-113
Identity = 159/195 (81.54%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MEINSFGENKS----WKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCL 60
           ++INSFGENKS    WKSVLDAMA+TH DASGLFDCNICLETVKDPVVTLCGHLFCWPC+
Sbjct: 12  IQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCI 71

Query: 61  YKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRR 120
           YKW+HFQDSS EK  RRL QCPVCKAEVSDATLVPLYGKG TQ+P ESKN QLGIVVPRR
Sbjct: 72  YKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESKNPQLGIVVPRR 131

Query: 121 PNGPACFELPTPTSHPTSHPV-PQSRQGNS--SNQSNICYAQVTGVFGEVVYARMFGAIT 180
           P GPACFE P PTSHPTSH V PQ R+G+S  S+QSN+ YAQVTG FGEVVYARM GAIT
Sbjct: 132 PQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGEVVYARMSGAIT 191

Query: 181 NLYAYPNAYPLAWLS 188
           NLYAYPN+YPL W S
Sbjct: 192 NLYAYPNSYPLVWSS 206

[Close]

BLAST of Csor.00g280630 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 30  FDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATL 89
           FDCNICL++V++PVVTLCGHLFCWPC++KWL  Q  S     +R +QCPVCK++VS +TL
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 90  VPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTS--------------- 149
           VPLYG+G      E KNS     VP+RP GP  + L  P S   S               
Sbjct: 106 VPLYGRGRCTTQEEGKNS-----VPKRPVGPV-YRLEMPNSPYASTDLRLSQRVHFNSPQ 165

Query: 150 ---HPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGA-ITNLYAYPNAYPLAWLS 189
              +PV      NS + S +    V  + GE+V  R+FG  + + +AYP+ Y LA  S
Sbjct: 166 EGYYPVSGVMSSNSLSYSAV-LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTS 216

[Close]

BLAST of Csor.00g280630 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 77/178 (43.26%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 30  FDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATL 89
           FDCNICL++V++PVVTLCGHLFCWPC++KWL  Q  S     +R +QCPVCK++VS +TL
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 90  VPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTS--------------- 149
           VPLYG+G      E KNS     VP+RP GP  + L  P S   S               
Sbjct: 106 VPLYGRGRCTTQEEGKNS-----VPKRPVGPV-YRLEMPNSPYASTDLRLSQRVHFNSPQ 165

Query: 150 ---HPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGA-ITNLYAYPNAYPLAWLS 189
              +PV      NS + S +    V  + GE+V  R+FG  + + +AYP+ Y LA  S
Sbjct: 166 EGYYPVSGVMSSNSLSYSAV-LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTS 216

[Close]

BLAST of Csor.00g280630 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30
Identity = 79/186 (42.47%), Postives = 99/186 (53.23%), Query Frame = 0


Query: 20  ADTHGDA--SGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQC 79
           A T G A  SG FDCNICL+T  DPVVTLCGHLFCWPC+YKWLH Q SS     +    C
Sbjct: 30  APTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSV-DQHQNNC 89

Query: 80  PVCKAEVSDATLVPLYGKG--GTQDPFESKNSQ-LGIVVPRRPNGPACFELPT------- 139
           PVCK+ ++  +LVPLYG+G       F SK    L   +PRRP  P+    P        
Sbjct: 90  PVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSASSLN 149

Query: 140 -----PTSHPTSHPVPQSRQGNSSNQS---------NICYAQVTGVFGEVVYARMFGAIT 180
                 T  P+ H    S +G ++ +S         +  Y  V G+FG++VY R+FG  T
Sbjct: 150 PSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLY-PVIGMFGDLVYTRIFGTFT 209

[Close]

BLAST of Csor.00g280630 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-29
Identity = 65/151 (43.05%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 25  DASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEK-----HGRRLQQCPV 84
           D+ G FDCNICL+ V+DPVVTLCGHLFCWPC++KW +  ++S+++     H R   +CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 85  CKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTSHPVPQ 144
           CK++VS+ATLVP+YG+G        K  Q G  VP RP GP          +       +
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRPTGPV---------YDLRGVGQR 133

Query: 145 SRQGNSSNQSNICYAQVTGVFGEVVYARMFG 171
             +G S          V GV  E+VY R+FG
Sbjct: 134 LGEGESQRYMYRMPDPVMGVVCEMVYRRLFG 148

[Close]

BLAST of Csor.00g280630 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-27
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 7   GENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSS 66
           GE+ +  S  D+  DT+ D  G F+CNIC E  +DP+VTLCGHLFCWPCLY+WLH     
Sbjct: 4   GESSTSTSYSDSNNDTN-DQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLH----- 63

Query: 67  KEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNG 120
              H    Q+CPVCKA V D  LVPLYG+G  Q    SK    G+ +P RP G
Sbjct: 64  ---HHSHSQECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYP-GLRIPNRPTG 106

The following BLAST results are available for this feature:

BLAST of Csor.00g280630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	8.7e-41	45.41	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	2.4e-30	43.26	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	2.6e-29	42.47	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	1.1e-27	43.05	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q96GF1	1.5e-19	46.08	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1	[more]

BLAST of Csor.00g280630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572360.1	4.03e-153	100.00	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023554609.1	2.35e-141	98.94	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_0235546...	[more]
XP_022969255.1	1.07e-137	96.28	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969256.1 E3 ub...	[more]
XP_022952773.1	2.16e-137	96.77	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952774.1 E3 ...	[more]
XP_038888270.1	6.95e-115	81.96	E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida]	[more]

BLAST of Csor.00g280630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXA9	5.19e-138	96.28	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A6J1GLI9	1.05e-137	96.77	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0K717	1.42e-114	78.26	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047460 P...	[more]
A0A1S3C1W7	6.70e-113	81.54	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 ...	[more]
A0A5A7SLT9	6.70e-113	81.54	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Csor.00g280630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	1.7e-31	43.26	RING membrane-anchor 1	[more]
AT4G03510.2	1.7e-31	43.26	RING membrane-anchor 1	[more]
AT4G27470.1	1.9e-30	42.47	RING membrane-anchor 3	[more]
AT4G28270.1	7.9e-29	43.05	RING membrane-anchor 2	[more]
AT2G23780.1	1.5e-27	51.33	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 32..80 e-value: 5.1E-10 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 32..81 score: 13.049892
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 32..80 e-value: 8.9E-10 score: 38.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 16..94 e-value: 1.4E-18 score: 68.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146
None	No IPR available	PANTHER	PTHR12313:SF59	E3 UBIQUITIN-PROTEIN LIGASE RMA1	coord: 9..186
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 30..82 e-value: 5.17306E-25 score: 90.0559
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 24..86
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 9..186
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 47..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g280630.m01	Csor.00g280630.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity