
Csor.00g280580 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGGTTCGACTTGGTTTTCTATTATCTTCATTGCTTTCTTACTTTTCCCAACACCCATTTCCTCACAACGCATTTCTCACCAGAACTCACGTAATCACTCATACCTTCAACACCCATTTCATGTCTTCAATGCTTTTCTTCGTTCCGCCATGAACTAACCTTCATGACTTGTGTACAGGTCATGTCCACCACCGCAAGATGGCGGCAGAAGAGGCGGCGATGGGGAGAAAAGGGGTGGAGACAGTTGAAGTAGCAGGGTCGAGCTTGCCGGACTGCTCGCATGCGTGTGCCTCGTGCTCGCCGTGCAGACTAGTGATGATAAGTTTTGTTTGTGCTTCACTTCAGGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGCAATAACAAGTCCTATCCTCTTCCTTAA ATGAAGGGTTCGACTTGGTTTTCTATTATCTTCATTGCTTTCTTACTTTTCCCAACACCCATTTCCTCACAACGCATTTCTCACCAGAACTCACGTCATGTCCACCACCGCAAGATGGCGGCAGAAGAGGCGGCGATGGGGAGAAAAGGGGTGGAGACAGTTGAAGTAGCAGGGTCGAGCTTGCCGGACTGCTCGCATGCGTGTGCCTCGTGCTCGCCGTGCAGACTAGTGATGATAAGTTTTGTTTGTGCTTCACTTCAGGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGCAATAACAAGTCCTATCCTCTTCCTTAA ATGAAGGGTTCGACTTGGTTTTCTATTATCTTCATTGCTTTCTTACTTTTCCCAACACCCATTTCCTCACAACGCATTTCTCACCAGAACTCACGTCATGTCCACCACCGCAAGATGGCGGCAGAAGAGGCGGCGATGGGGAGAAAAGGGGTGGAGACAGTTGAAGTAGCAGGGTCGAGCTTGCCGGACTGCTCGCATGCGTGTGCCTCGTGCTCGCCGTGCAGACTAGTGATGATAAGTTTTGTTTGTGCTTCACTTCAGGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGCAATAACAAGTCCTATCCTCTTCCTTAA MKGSTWFSIIFIAFLLFPTPISSQRISHQNSRHVHHRKMAAEEAAMGRKGVETVEVAGSSLPDCSHACASCSPCRLVMISFVCASLQEAETCPMAYRCMCNNKSYPLP Homology
BLAST of Csor.00g280580 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.8e-24 Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.3e-10 Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 7.3e-10 Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of Csor.00g280580 vs. NCBI nr
Match: KAG6572355.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 224 bits (570), Expect = 8.97e-74 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Csor.00g280580 vs. NCBI nr
Match: XP_022953138.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita moschata]) HSP 1 Score: 194 bits (493), Expect = 3.65e-62 Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 0
BLAST of Csor.00g280580 vs. NCBI nr
Match: XP_038888568.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Benincasa hispida]) HSP 1 Score: 182 bits (463), Expect = 2.67e-57 Identity = 89/119 (74.79%), Postives = 97/119 (81.51%), Query Frame = 0
BLAST of Csor.00g280580 vs. NCBI nr
Match: XP_004136818.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis sativus] >KGN43602.1 hypothetical protein Csa_020445 [Cucumis sativus]) HSP 1 Score: 179 bits (453), Expect = 1.05e-55 Identity = 95/124 (76.61%), Postives = 99/124 (79.84%), Query Frame = 0
BLAST of Csor.00g280580 vs. NCBI nr
Match: XP_008455333.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]) HSP 1 Score: 174 bits (442), Expect = 4.68e-54 Identity = 91/122 (74.59%), Postives = 93/122 (76.23%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy TrEMBL
Match: A0A6J1GMI9 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111455631 PE=3 SV=1) HSP 1 Score: 194 bits (493), Expect = 1.77e-62 Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy TrEMBL
Match: A0A0A0K5P8 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G047370 PE=3 SV=1) HSP 1 Score: 179 bits (453), Expect = 5.08e-56 Identity = 95/124 (76.61%), Postives = 99/124 (79.84%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy TrEMBL
Match: A0A1S3C0N9 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103495522 PE=3 SV=1) HSP 1 Score: 174 bits (442), Expect = 2.26e-54 Identity = 91/122 (74.59%), Postives = 93/122 (76.23%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy TrEMBL
Match: A0A6J1ESJ9 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111437184 PE=3 SV=1) HSP 1 Score: 167 bits (423), Expect = 2.22e-51 Identity = 87/129 (67.44%), Postives = 92/129 (71.32%), Query Frame = 0
BLAST of Csor.00g280580 vs. ExPASy TrEMBL
Match: A0A6J1JEL1 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486204 PE=3 SV=1) HSP 1 Score: 166 bits (420), Expect = 4.94e-51 Identity = 85/121 (70.25%), Postives = 91/121 (75.21%), Query Frame = 0
BLAST of Csor.00g280580 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 ) HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25 Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 0
BLAST of Csor.00g280580 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein ) HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11 Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0
BLAST of Csor.00g280580 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). ) HSP 1 Score: 64.7 bits (156), Expect = 5.2e-11 Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|