Csor.00g279560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g279560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	glycine-rich protein-like
Location	Csor_Chr19: 10204263 .. 10204721 (-)
RNA-Seq Expression	Csor.00g279560
Synteny	Csor.00g279560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAAGGCCTTTATTTTTCTCGGTCTTCTCTTCGCCCTCGTTCTCCTTATCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACCTCCACAAAGAAGGAGAACGGTTAGTTCGTAAAATATTTATTTATTCCATTTAAATCTTTATGTTCTAACGTCGGTTTGTTTTAATGATGATATATTGTAGAAGCCACGGCGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATGGAGGTTATGGCGGGCGTGGTGGGTACGGTCGTGGTGGGTATGGTGGTCGTGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGACGTGGTGGGTACGGTGGCGGAGGTGGGTATGGAAGGGGTTGCCGGTATGGACGATGCGGGTACAGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGCGCAAAGCCGTAG

mRNA sequence

ATGAGTTCCAAGGCCTTTATTTTTCTCGGTCTTCTCTTCGCCCTCGTTCTCCTTATCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACCTCCACAAAGAAGGAGAACGAAGCCACGGCGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATGGAGGTTATGGCGGGCGTGGTGGGTACGGTCGTGGTGGGTATGGTGGTCGTGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGACGTGGTGGGTACGGTGGCGGAGGTGGGTATGGAAGGGGTTGCCGGTATGGACGATGCGGGTACAGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGCGCAAAGCCGTAG

Coding sequence (CDS)

ATGAGTTCCAAGGCCTTTATTTTTCTCGGTCTTCTCTTCGCCCTCGTTCTCCTTATCTCTTCGGAGGTGGCCGCGAGAGACCTCGCAGAGACCTCCACAAAGAAGGAGAACGAAGCCACGGCGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATGGAGGTTATGGCGGGCGTGGTGGGTACGGTCGTGGTGGGTATGGTGGTCGTGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGTCGAGGTGGGTATGGTGGACGTGGTGGGTACGGTGGCGGAGGTGGGTATGGAAGGGGTTGCCGGTATGGACGATGCGGGTACAGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGCGCAAAGCCGTAG

Protein sequence

MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGGRGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVVEGAKP

Homology

[Close]

BLAST of Csor.00g279560 vs. ExPASy Swiss-Prot
Match: P23137 (Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 58/127 (45.67%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           M SKAF+FLGL  A   LISSEV A +LAETS   + +     NGV+             
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDG---ENGVD------------- 60

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRC--GY----RCCS 120
                     GRGGY      GG G YGG  G GGGG   RGCRYG C  GY    RCCS
Sbjct: 61  --------VDGRGGY---NDVGGDGYYGGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCS 100

Query: 121 YAGEVVE 122
           YAGE ++
Sbjct: 121 YAGEAMD 100

[Close]

BLAST of Csor.00g279560 vs. NCBI nr
Match: KAG6572253.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (548), Expect = 7.12e-70
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG
Sbjct: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120

Query: 121 EGAKP 125
           EGAKP
Sbjct: 121 EGAKP 125

[Close]

BLAST of Csor.00g279560 vs. NCBI nr
Match: KAG7011884.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212 bits (540), Expect = 1.14e-68
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG
Sbjct: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120

Query: 121 EGAK 124
           EGAK
Sbjct: 121 EGAK 124

[Close]

BLAST of Csor.00g279560 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 202 bits (515), Expect = 1.13e-64
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 78

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYGRGGYGGRGGYG      GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 79  RGGYGRGGYGGRGGYG------GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 137

Query: 121 EGAKP 125
           EGAKP
Sbjct: 139 EGAKP 137

[Close]

BLAST of Csor.00g279560 vs. NCBI nr
Match: XP_023554636.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (497), Expect = 3.61e-62
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLG LFAL+L+ISSEVAARDLAETS KKENEAT ETNGVEDAKYGGYDGGYGG
Sbjct: 1   MSSKAFIFLGFLFALILVISSEVAARDLAETSAKKENEATVETNGVEDAKYGGYDGGYGG 60

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYG     GRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 61  RGGYG-----GRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120

Query: 121 EGAKP 125
           EGAKP
Sbjct: 121 EGAKP 120

[Close]

BLAST of Csor.00g279560 vs. NCBI nr
Match: XP_023554637.1 (cold and drought-regulated protein CORA-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (497), Expect = 6.47e-62
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLG LFAL+L+ISSEVAARDLAETS KKENEAT ETNGVEDAKYGGYDGGYGG
Sbjct: 19  MSSKAFIFLGFLFALILVISSEVAARDLAETSAKKENEATVETNGVEDAKYGGYDGGYGG 78

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYG     GRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 79  RGGYG-----GRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 138

Query: 121 EGAKP 125
           EGAKP
Sbjct: 139 EGAKP 138

[Close]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL
Match: A0A6J1GM55 (cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 5.48e-65
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 78

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYGRGGYGGRGGYG      GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 79  RGGYGRGGYGGRGGYG------GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 137

Query: 121 EGAKP 125
           EGAKP
Sbjct: 139 EGAKP 137

[Close]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL
Match: A0A6J1HZJ5 (glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 8.58e-60
Identity = 113/125 (90.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFA +LLISSEVAARDLAETS  KE EAT ETNGVEDAKYGGYDGGYGG
Sbjct: 19  MSSKAFIFLGLLFAFILLISSEVAARDLAETSANKEKEATVETNGVEDAKYGGYDGGYGG 78

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYG     GRGGYGGRGGYGGRGGYGGRGGYGG GGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 79  RGGYG-----GRGGYGGRGGYGGRGGYGGRGGYGGRGGYGRGCRYGRCGYRCCSYAGEVV 138

Query: 121 EGAKP 125
           EGAKP
Sbjct: 139 EGAKP 138

[Close]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL
Match: A0A6J1GKL6 (glycine-rich protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 7.92e-58
Identity = 108/125 (86.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 78

Query: 61  RGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 120
           RGGYG                 GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV
Sbjct: 79  RGGYG-----------------GRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVV 126

Query: 121 EGAKP 125
           EGAKP
Sbjct: 139 EGAKP 126

[Close]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL
Match: A0A5D3DE59 (Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00050 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 8.88e-51
Identity = 107/127 (84.25%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGG-YDGGYG 60
           MSSKAF+FLGLL A VLL+SSEVAARDLAETS+K +NEAT ETNGVEDAKYGG YD GYG
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  GRGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGG-GGYGRGCRYGRCGYRCCSYAGE 120
           G GGYGRGGYG RGGY       GRGGYGGRGGYGGG GGYGRGCRYGRCGYRCCSYAGE
Sbjct: 61  G-GGYGRGGYG-RGGY-------GRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGE 118

Query: 121 VVEGAKP 125
           VVEGAKP
Sbjct: 121 VVEGAKP 118

[Close]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL
Match: A0A1S3C180 (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103495657 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 7.28e-50
Identity = 106/127 (83.46%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGG-YDGGYG 60
           MSSKAF+FLGLL A VLL+SSEVAARDLAET +K +NEAT ETNGVEDAKYGG YD GYG
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  GRGGYGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGG-GGYGRGCRYGRCGYRCCSYAGE 120
           G GGYGRGGYG RGGY       GRGGYGGRGGYGGG GGYGRGCRYGRCGYRCCSYAGE
Sbjct: 61  G-GGYGRGGYG-RGGY-------GRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGE 118

Query: 121 VVEGAKP 125
           VVEGAKP
Sbjct: 121 VVEGAKP 118

[Close]

BLAST of Csor.00g279560 vs. TAIR 10
Match: AT2G05540.1 (Glycine-rich protein family )

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-09
Identity = 72/134 (53.73%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           M+SKA +FL L+  +VLLI+SEV ARDLAE S +++N    E    E  ++GG+ G  GG
Sbjct: 1   MASKALLFLSLI--VVLLIASEVVARDLAEKSAEQKNNERDEVKQTE--QFGGFPG--GG 60

Query: 61  RGGYGRGGYGGR--GGYGGR-GGYGGR-GGYGGR-GGYGG-GGGYGRGCRYGRC--GY-- 120
            GG+  GGYGG   GGYG R GGY  R GGYG R GGYG  GGGY   CRYG C  GY  
Sbjct: 61  YGGFPGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGY---CRYGCCYRGYYG 120

Query: 121 ---RCCSYAGEVVE 122
              RCC+YAG+ V+
Sbjct: 121 GCFRCCAYAGQAVQ 125

[Close]

BLAST of Csor.00g279560 vs. TAIR 10
Match: AT2G05530.1 (Glycine-rich protein family )

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-05
Identity = 63/128 (49.22%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 1   MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 60
           M+SKA +  GL    VLL+ +EVAA   A  + K E+  T + +         Y+GG+GG
Sbjct: 1   MASKALVLFGLF--AVLLVVTEVAA---ASGTVKSESGETVQPD--------QYNGGHGG 60

Query: 61  RGGY-GRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRC--GY----RCC 120
            GGY G GGY G GG+ G GGY G GGY G GG+GG  GY   CRYG C  GY    RCC
Sbjct: 61  NGGYNGGGGYNGGGGHNG-GGYNGGGGYNG-GGHGGRHGY---CRYGCCYRGYHGCSRCC 110

Query: 121 SYAGEVVE 122
           SYAGE V+
Sbjct: 121 SYAGEAVQ 110

The following BLAST results are available for this feature:

BLAST of Csor.00g279560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23137	1.4e-04	45.67	Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1	[more]

BLAST of Csor.00g279560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572253.1	7.12e-70	100.00	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011884.1	1.14e-68	100.00	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952570.1	1.13e-64	95.20	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]	[more]
XP_023554636.1	3.61e-62	92.00	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita pepo subsp. p...	[more]
XP_023554637.1	6.47e-62	92.00	cold and drought-regulated protein CORA-like isoform X2 [Cucurbita pepo subsp. p...	[more]

BLAST of Csor.00g279560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM55	5.48e-65	95.20	cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1HZJ5	8.58e-60	90.40	glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1	[more]
A0A6J1GKL6	7.92e-58	86.40	glycine-rich protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A5D3DE59	8.88e-51	84.25	Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C180	7.28e-50	83.46	cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Csor.00g279560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05540.1	9.6e-09	53.73	Glycine-rich protein family	[more]
AT2G05530.1	8.5e-05	49.22	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..103 e-value: 4.4E-16 score: 59.3
IPR010800	Glycine rich protein	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	PANTHER	PTHR37389:SF9	GLYCINE-RICH PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g279560.m01	Csor.00g279560.m01	mRNA