Csor.00g279380 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g279380
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 10137567 .. 10139691 (-)
RNA-Seq ExpressionCsor.00g279380
SyntenyCsor.00g279380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTGAATGGGGTTGTGTAAAGAGGGCCAGGGGAAGCGAGAATCTAGGGATAAGACAAGGTTTGGGAGGAATATTTTGCATTGAAGAGACTTTAATCAGGGCCCCTCAATATAATACATGAAAGAGAAAGAGAAGGACAATAATACATTTTTTAAGGAGGAAGGAGGAAGATTACCCATCAGCTAAACAGCTCCTTAATTACTGTCCCAAAGCAAAGCACACCTGCCAGGCCAAGGGAACGATCACTTCAGCCCAGAAGCTTAAAATTGCCTCATGAGGGAGTCCATTGAATGATGGCAATCAACGTATTCTGCAAAAAAAGTTTAAAAATATGGGTAACCACAGAGCACATTTGAGACCATTGCAGAGAAGGTAAAATGATATGAACATATACATTTGAGAGCATTGAGGATGGGAAATGGCATCAGGTAAATTGGTTGACATGTTGGATCCCATAATACTAAGGTCCATTATTATATTGGAAGCTTAAGAACACTGGTTGTTCAAATAAGTGAACCACTATCCAGACAACCTCGTCAGCCAACATAATATAATTGAGAGTGCAATTTCTAGACTCCATGACATGAAGAAGCTTCAAACTTAAATGAAATTTCCCTTTACTTGAATAATCCATCAAGAAACACTGTCTAGACAACCTCGTCAGTTGTAGGAACCAATCCATCAGCCAACGTGTTAGTATAAAGACCAATTGCAACCAGAAACTTCCCATCTTGTGATTCTAAACCACTTCTTAGTGAAGCTCTACTGCCTCAGTAGAAAGACCAGCCATCACATAATGAAACTATTGGAATGGTGTATGTGTAAATAGTTGCCTCAATCCCCTTTCTCAACCATTTACTATAATGCTCAACAATCGAAGAGGTGCCGGACTAGCATTCCTAAATGTCAAGAATCAAACCCCAAATCTAAATTTCGATTTCTATAATGCTCAAGAATCAAAGAGATGCATGTAATGCACTGGACAAGTATCATAATGAAAATTTTGACATTAATCTCACTCAAAAAACTGAATTTCCCGTTTTGATCATTACAATTCTTACATAGTCTGCAGGCGAAAAAGACGATGCCGGACTAGCCTCTTCAGCCTCGACACGAAGTAGCTCTTATCATGTTTGTGAAACTGCCTCGCAAGCCCGAATCCATGTTCTTGTACTTCCCGAGGATCTTCCTTGCGTGATGAGGCTGGAGTTGGGGTGTCAAAATGGAAAAGCTCTGAACTACATAGATTTTACTGATCAATTCGAAAATGAACTACATATGCTAATGTTCATAAAATTATTTGTAATGGTATCGTTTGGATCTGTTCAAGAATAACAAATTGTAAAAGGCTCCTATGTCAAATTTCGAAGTGATTTAATTACCTTGGCTTGGCTTGGCTTTAATTATACTTCAGTTCCCCTTACGTAGCCATCTCAATCATATTCATATTAGATCCAAAATGATAATGTTTACTTTCATACTTATATTGATGAAATTCCAAGATATTCGAAGCATCATAGGATGGGAAATTTGTGGACTTTGGAAGAACTATGCAAATTATTTAATTGTTAATTAGTTTGTAGGCTAAGCATTTACTTGAGATATGTTAAAAATTTATAGATATTATAATTCATTGAAAACTAAGGCATAAAAAAGGTGTTTTTTTTCCTATTTATTAAATTATATTTTATTGGAAAATTAAAAGCCGCGAAAAGTTAGGGTTTGCCACTAAGATTCTTTCCGCCACCGTTTTGATAATCACAACCAAACCAGAATTCATCTTGGAAAAGTAATCACTCGGTACCTAACCGTTCTCGAGTGTTCATCGCTCATTACGCTTTTCCATTAGGGTTTTTGCTCAAATTTAAAAGGAATTAAAGGAATCGAAATCAAAATCAAACCGCGAAATAAAAAAAAGTCGAAGAAATCTAAGCAACTCAGTCCCTTAGATGTTCGTATGATATTGCGATCATATTCGCAAATCATTACAGGTCTGCAAAAGGCTCATCACCATTGCGAAGAACAAAAATCGTTTGAATCAGAAATTTCAGAACGAAATGAAGAGAAAACAGAAAGATATAGAAGATGTAGCTACTCCAGTGTTCTCCCAAGCGCTATAA

mRNA sequence

ATGGCTTTTGAATGGGGTTGTGTAAAGAGGGCCAGGGGAAGCGAGAATCTAGGGATAAGACAAGGCGAAAAAGACGATGCCGGACTAGCCTCTTCAGCCTCGACACGAAGTAGCTCTTATCATGTTTGTGAAACTGCCTCGCAAGCCCGAATCCATGTTCTTGTACTTCCCGAGGATCTTCCTTGCGTGATGAGGCTGGAGTTGGGGTGTCAAAATGGAAAAGCTCTGAACTACATAGATTTTACTGATCAATTCGAAAATGAACTACATATGCTAATGTTCATAAAATTATTTGTAATGGTCTGCAAAAGGCTCATCACCATTGCGAAGAACAAAAATCGTTTGAATCAGAAATTTCAGAACGAAATGAAGAGAAAACAGAAAGATATAGAAGATGTAGCTACTCCAGTGTTCTCCCAAGCGCTATAA

Coding sequence (CDS)

ATGGCTTTTGAATGGGGTTGTGTAAAGAGGGCCAGGGGAAGCGAGAATCTAGGGATAAGACAAGGCGAAAAAGACGATGCCGGACTAGCCTCTTCAGCCTCGACACGAAGTAGCTCTTATCATGTTTGTGAAACTGCCTCGCAAGCCCGAATCCATGTTCTTGTACTTCCCGAGGATCTTCCTTGCGTGATGAGGCTGGAGTTGGGGTGTCAAAATGGAAAAGCTCTGAACTACATAGATTTTACTGATCAATTCGAAAATGAACTACATATGCTAATGTTCATAAAATTATTTGTAATGGTCTGCAAAAGGCTCATCACCATTGCGAAGAACAAAAATCGTTTGAATCAGAAATTTCAGAACGAAATGAAGAGAAAACAGAAAGATATAGAAGATGTAGCTACTCCAGTGTTCTCCCAAGCGCTATAA

Protein sequence

MAFEWGCVKRARGSENLGIRQGEKDDAGLASSASTRSSSYHVCETASQARIHVLVLPEDLPCVMRLELGCQNGKALNYIDFTDQFENELHMLMFIKLFVMVCKRLITIAKNKNRLNQKFQNEMKRKQKDIEDVATPVFSQAL
Homology
[Close]
BLAST of Csor.00g279380 vs. NCBI nr
Match: KAG6572235.1 (hypothetical protein SDJN03_28963, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282 bits (722), Expect = 7.34e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAFEWGCVKRARGSENLGIRQGEKDDAGLASSASTRSSSYHVCETASQARIHVLVLPEDL 60
           MAFEWGCVKRARGSENLGIRQGEKDDAGLASSASTRSSSYHVCETASQARIHVLVLPEDL
Sbjct: 1   MAFEWGCVKRARGSENLGIRQGEKDDAGLASSASTRSSSYHVCETASQARIHVLVLPEDL 60

Query: 61  PCVMRLELGCQNGKALNYIDFTDQFENELHMLMFIKLFVMVCKRLITIAKNKNRLNQKFQ 120
           PCVMRLELGCQNGKALNYIDFTDQFENELHMLMFIKLFVMVCKRLITIAKNKNRLNQKFQ
Sbjct: 61  PCVMRLELGCQNGKALNYIDFTDQFENELHMLMFIKLFVMVCKRLITIAKNKNRLNQKFQ 120

Query: 121 NEMKRKQKDIEDVATPVFSQAL 142
           NEMKRKQKDIEDVATPVFSQAL
Sbjct: 121 NEMKRKQKDIEDVATPVFSQAL 142

The following BLAST results are available for this feature:
BLAST of Csor.00g279380 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g279380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572235.17.34e-96100.00hypothetical protein SDJN03_28963, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g279380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g279380 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g279380.m01Csor.00g279380.m01mRNA