Csor.00g279310 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g279310
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	F-box domain-containing protein
Location	Csor_Chr19: 10109710 .. 10114087 (+)
RNA-Seq Expression	Csor.00g279310
Synteny	Csor.00g279310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCGTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAATTTGTTTGTTTGTTTCCTGCTTCTCATCATTTTCTCTTTCCCGTTCCATTCTGAAACGTATTTCATTTGGAATTGTCTCATAGGACAAAAACTGAATGCCACTCCCGTATTTTTCTTCGAATTTATTTCCATTTTTAATTAAATAATTTAATATTATATTTCCCTCTCACTTGAAATAAATTTGGAAATTAATATTGTAACCTTTTTATTATTATTTTTTAAAAAGAAAAAAAAAACAAATCTATTTTTTTATCGTTTAGAGACAAAACTTTAATAATTGTAAATGTTTGGTAAGTTCAAGCATAACCAGTTGAATTAAAATAAATAAATAAATAAATAAGATTTTTTTTTTATTATTATTCACGGACTAAATAGATACAAATTTTAATTTTTTCGTCAATAATAGTTACATATTAATTTTTTTTATCATTCACAGACTAAATAGACACAAATTTTAATTTTTTCGTCAATAATAATTACAATTTAATGATTAAATAGACATAGACTTCATAGACTTCAACGACACAGTGTTTGGTTCTAAGATTCTAGTACCATTTGTAATAATCCAAGTTTATCGTCCGTAAATATTGTCTGTTTTAGTCTGTAAAGTCGTTAGTCTCACGGTTAAAATGTTTATACTAGAGAAATGTTCTAACCCTACTTCGACTAATGCATCGCATCATTTGGTAAATGTTTGTACTTGACTCTAATACCATTTGTAACAATTCAAGCTCATTGCTAGCGTTTTGGTTCAATATGTAACGTCGCTTATGATTTTGAAAAATGTGTCTGTTAATGAGAGGGTCTAGCTTTACTCCGACCAATGCATCACATCGTCCAATAATCGGGGCTCTGAAACCACTGAAACAACTCAAGCCTACAGCTAACAGATATTGTCTGCTTTTGTCCGTGTCACCATCAGTCTGTTAGGGATAAGTTTCCACACTCTTATAAGGAAAGACTCTATTCCCCTTTCTAATCGATCTGAAATCTTACAATTCACTTCTCTAGGACGCCCAACGTCCTTACTAGCACACCGCTGACGAACTCGGATACCATTTGCAACAGTTTATGTCTATGGCTAGTATATATTGTCCACTTTAAACTTTTCCTTTCGAGTAAAATAAGTCTATTAGAGAGAGAGAATCTAACCCTAGTTCGACCATTGTATCATACACGGTAAACGCTCGTAAGCTAAATTTATTTTAACCAACAAACATAGGAAAAAGTAAAGCTGGAAAGGGTAAACACGTAATTTAGATGGATTATAGACGGAAAAAGAGGGGGGGCGGTGATAGTGAGGGTTCAAGGCAGCCGTAAACGAAGAAAGAAAGGAGGCGTTGTGCAGAGAATCCGACGCTTCTATTCGGAGTTTGGCTCGAGATGGAATCTTTGGTGCACGCACCGTATATACATCTCACTCTAGGGCTCCCCTACGACCTGCGTGGGATAGAGACCTGACCTCCGTCCCTTAACATGGATTTCTGAATTCCTAGTAATGGACCTTTTTGCCCTTTTCCCTTCCTAAGGCCCATTGGGCTTCAATTCTCTCTCTCTCACCGGGCCCGTTTCAATTTGGTTTCTAAGCTTTTGCTCGACGACGTAAACTAATCTTACATTACCGAGTCGTAGAAAAATGATTCGATAGGGTAAGCGTTCTTAATAACGATTGGTTGTAGTAGAGCTACGATAGGCTCGTAACTTCAAATAGCGATTATATATTAGTACTGTATAGTTCGTGTTCGACTACAAAAGAATTATATGGCTTCATGATGACACCAATGCTTGACCCTCTTGACTAAGAACTGAGCTCAGGTTCCTTTTGTGTATCTCGAGTCTTCTTATGGGTAGAATGTTTTAATTTTTTAGCTCGAGTTCCTTTTGTGATCTCGAGCCTTTTTATGGATATTATGTTTTAATTTGTTTTTGTAAAAATATTCAAAACTAATTAAAATAAAAATGTTGGAGTTTTGGAAAGTAAAAGTTTTAAAAAATGCATAATATAATGGACTTAATTCATAATTTAGCATTTTATTAATTATAAAATAATTTCAAATTTTAATTTTTCGGGGTCTTTTATCGTTTAATGAAAATATAACGTACGTTGGATCTAGATCTTCTCTTTCTTAAACCTCAACCTAATAACGGTTCATCCCTTAAATTCCGTTCATATTTTTCAATCAATCTAGCTCGACCCATTTCATCGAACATAAAAATATTATAACATAACTTACGTCATATCGTCACCAAACAACAGTTTATGACCTAAAATTTCATTCATGTTTTTCAATCAATCTAGCTCGACCCACTTCATCGAACTAAAGTACTATAACGTAACCGTTCTCATCAAATTGTCCTAGATTCTCTCTCTTTCTTAAACATCGGCCAAGTAACAATTTATGACATGAACTTTCGTTCGTGTTTTGTAATCAGTTTAGTTCGACTCGTTCTATCAAAATAAAATAGTAAATGGACGGATGGTAAATTTTAATCCGGATATAAATTCAATAATTAAACTTATAAAAGTCAAATATACCATGTATAGTTATATCTGTGAAAGATTCCCATGGTAAAAATCTGATTTGTTTTCAATTCAGGTAAAAAGGGTAAAAAGTAATAAAAATGGCAGTACAATTTAGTCAATTTAAATATTTAATTAATTTTGTAATTAATAAAATTATAGAAAATTAAAAAGGGAAATAATTAGTGACCTACATTATTGATTTTTAGTTTAAATAAAAATAAAATTAGAAGCAATAAATTAATCTAAAATTATCTGTTTTCCACTGTTTATTATAAGTAAAAAAATACAAAAATAAATATTATAAATATTAAAAAAAAAGAAAAGTGAAATTATAATATTTTACAATAAATCAAGAATAGCGCATTTTAGCAGGACGCACCATTAAATAGCATATTACAAGATTATATTTCATTTTTATTATTATTATTACATTACACTAATTTTTTTCTCCTTCTAATTTTTCCGACCGGCGATCGAGGGCCTCCAGCTCCAAATTCCTCGCCGCCACATCTTCGGAGCCAGAGCCGGCTCCGGCCCGGATCTAATTCTTCCACGTCCATCCTTTGGATTTCCCCAATTTTATGAACCCTAATTTACTCTTCTGTGCACTTCCAGTGACATTTTCCCCTATTTTTTGAAAAAGCGGGAAAAATCTTTTTTAGGGGAATTTCGTCTGTTTTCGCGGGAGGAGGCTTGTTTGAGTGAGCTAGTGCCTCTGGTACAGTGAGATTTGCCCACAGGTGAGCTTAATTTTGCTTGATGTTCTAAGTACACGTGGCGATCTGGATAGACACCACCTCCAGTTTGTTTGCTCGGATTTCAGTGAGCTATTTTTAGGTTTTTTTCTTTTTTCCTTCTAATTTTTGAGGGATAAAGTCTTTGTAGCGTATGGATTTTGTACATGTGCTGTTCGTATTTTGAATGTATTTCTTTTTGGCTGCGAATTGAGGAAATTGAGCTGAATTTTGTCATTTCGAGTGGATATGGATTTGTTGCGAAATGGGTTTCTATTTTTGTGTTTGAATGCCGAGGAATATGAAGATGGCGATGGGATTTTGTGCTTTTTAGCTGCGATTGTACTCTAGTTATGGAGAAATGTGAATGTCGATTTTGTCAAATTATTTGAGATTGGGACTGGTCGATTAGTTTACTTCAAAGATCGAGATTCTCGAGGCTCTGATTTTTAAATTTGATTTTCTTTTTCCGAGTTTACTGTAGCTAGCTGCTAAACAATGCATGAATTTCCAGTTCTAGATCTTGTCTTTTATTTTCCTTCCTTGTTACTTGCCATAATGAGAATTCTCGACTTCATTGACTCTGAGATTTATCCTTTTTCTGCGTTGAAAATAAACTCTGCAGGTATTGGAACGTTGA

mRNA sequence

ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCGTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGTGCCTCTGGTACAGTGAGATTTGCCCACAGGTATTGGAACGTTGA

Coding sequence (CDS)

ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTCGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCGTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGTGCCTCTGGTACAGTGAGATTTGCCCACAGGTATTGGAACGTTGA

Protein sequence

MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPCLWYSEICPQVLER

Homology

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BLAST of Csor.00g279310 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 84/153 (54.90%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 7   QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 66
           + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE L
Sbjct: 12  KSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEEL 71

Query: 67  CFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLS 126
           CFR VS     S+R ++ ALGGY+ LY LC+RPVL+RL      P++   +DQ+Q LSLS
Sbjct: 72  CFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQ-LSLS 131

Query: 127 LFCVDYYER---NGWLGGDAAAAAPSLRFLCKP 157
           L+CV YYER     WLG    A   SL FL KP
Sbjct: 132 LYCVHYYERLYVGAWLGD---APPSSLIFLRKP 153

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BLAST of Csor.00g279310 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-11
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 8   GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 67
           GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+
Sbjct: 12  GDAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DE 71

Query: 68  SLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQD 127
            LWE +C RH ++     + +R ++LALGG++RL+ L L P LS+ N     PR R  +D
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKD 131

Query: 128 QVQRLSLSLFCVDYYER 136
           ++ +L+LSL  + YYE+
Sbjct: 132 EL-KLTLSLLSIRYYEK 139

[Close]

BLAST of Csor.00g279310 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-11
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 28  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLS--SVRPLILA 87
           D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +R ++L+
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 88  LGGYKRLYMLCLRPVLSR-----LNRSGLVPRVRTLQDQVQRLSLSLFCVDYYE 135
           LGG++RL+ + +RP+  R       +    P VR  +DQVQ LSLSLF + +++
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQ-LSLSLFSIGFFQ 190

[Close]

BLAST of Csor.00g279310 vs. NCBI nr
Match: KAG6572228.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353 bits (907), Expect = 3.70e-123
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPCLWYSEICPQVLER 170
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPCLWYSEICPQVLER
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPCLWYSEICPQVLER 170

[Close]

BLAST of Csor.00g279310 vs. NCBI nr
Match: KAG7011864.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (824), Expect = 1.15e-110
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. NCBI nr
Match: XP_022952371.1 (F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (817), Expect = 1.34e-109
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCFRHVSSP LSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. NCBI nr
Match: XP_022969281.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 316 bits (810), Expect = 1.57e-108
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCF HVSSP LSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. NCBI nr
Match: XP_022136160.1 (F-box protein SNE-like [Momordica charantia])

HSP 1 Score: 223 bits (569), Expect = 8.31e-72
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQRNAAEKNNKIKK-KKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR--SGLVPRVRTLQD 120
           SLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+L+  NR  S  V RV TLQD
Sbjct: 61  SLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQD 120

Query: 121 QVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
            +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP
Sbjct: 121 HLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL
Match: A0A6J1GK18 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1)

HSP 1 Score: 319 bits (817), Expect = 6.50e-110
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCFRHVSSP LSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL
Match: A0A6J1HXD0 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1)

HSP 1 Score: 316 bits (810), Expect = 7.59e-109
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCF HVSSP LSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
           QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL
Match: A0A6J1C339 (F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 4.02e-72
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDD
Sbjct: 1   MQRNAAEKNNKIKK-KKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDD 60

Query: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR--SGLVPRVRTLQD 120
           SLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+L+  NR  S  V RV TLQD
Sbjct: 61  SLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQD 120

Query: 121 QVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156
            +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP
Sbjct: 121 HLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL
Match: A0A5N6RCK8 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 1.18e-61
Identity = 106/146 (72.60%), Postives = 117/146 (80.14%), Query Frame = 0


Query: 11  KRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRH 70
           K +   KK KF INDH DILTEILKRLDGPSL  AACVCRLWCA+ARND SLWEHLCFRH
Sbjct: 5   KAEEKEKKPKFCINDHADILTEILKRLDGPSLGVAACVCRLWCAIARND-SLWEHLCFRH 64

Query: 71  VSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCV 130
           V+SP  SSVRP++LALGGYKRLYM+C+RPVL+RL  S LV R    +D+VQ LSLSLFCV
Sbjct: 65  VASPPPSSVRPVVLALGGYKRLYMVCVRPVLTRLGHSDLVRRRVWTRDEVQ-LSLSLFCV 124

Query: 131 DYYERNGWLGGDAAAAAPSLRFLCKP 156
           DYYER   LGG   A+A SL FLCKP
Sbjct: 125 DYYERR--LGG---ASASSLMFLCKP 143

[Close]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL
Match: A0A6P4BI13 (F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 2.60e-60
Identity = 107/155 (69.03%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 6   PQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 65
           PQ +       K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RND SLWEH
Sbjct: 2   PQQNRAEDQKEKRPRFCINDHIDILIEILKRLDGPSLGAAACVCRLWCAITRND-SLWEH 61

Query: 66  LCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSL 125
           LCFRHVSSP  SSVRP+++ALGGYKRLYM+C+R VLSRL  S LV RV T  D+VQ LSL
Sbjct: 62  LCFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRQVLSRLGHSDLVRRVWT-GDEVQ-LSL 121

Query: 126 SLFCVDYYER----NGWLGGDAAAAAPSLRFLCKP 156
           SLFCVDYYER    +G LGG  A+A+ SL FLCKP
Sbjct: 122 SLFCVDYYERLGSGSGRLGGGDASAS-SLMFLCKP 152

[Close]

BLAST of Csor.00g279310 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 148.3 bits (373), Expect = 5.7e-36
Identity = 84/153 (54.90%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 7   QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 66
           + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE L
Sbjct: 12  KSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEEL 71

Query: 67  CFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLS 126
           CFR VS     S+R ++ ALGGY+ LY LC+RPVL+RL      P++   +DQ+Q LSLS
Sbjct: 72  CFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQ-LSLS 131

Query: 127 LFCVDYYER---NGWLGGDAAAAAPSLRFLCKP 157
           L+CV YYER     WLG    A   SL FL KP
Sbjct: 132 LYCVHYYERLYVGAWLGD---APPSSLIFLRKP 153

[Close]

BLAST of Csor.00g279310 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 8   GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 67
           GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+
Sbjct: 12  GDAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DE 71

Query: 68  SLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQD 127
            LWE +C RH ++     + +R ++LALGG++RL+ L L P LS+ N     PR R  +D
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKD 131

Query: 128 QVQRLSLSLFCVDYYER 136
           ++ +L+LSL  + YYE+
Sbjct: 132 EL-KLTLSLLSIRYYEK 139

The following BLAST results are available for this feature:

BLAST of Csor.00g279310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	8.0e-35	54.90	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	2.8e-11	35.77	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	2.8e-11	38.60	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of Csor.00g279310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572228.1	3.70e-123	100.00	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011864.1	1.15e-110	100.00	F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952371.1	1.34e-109	99.36	F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-li...	[more]
XP_022969281.1	1.57e-108	98.72	F-box protein SNE-like [Cucurbita maxima]	[more]
XP_022136160.1	8.31e-72	73.42	F-box protein SNE-like [Momordica charantia]	[more]

BLAST of Csor.00g279310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK18	6.50e-110	99.36	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1	[more]
A0A6J1HXD0	7.59e-109	98.72	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1	[more]
A0A6J1C339	4.02e-72	73.42	F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1	[more]
A0A5N6RCK8	1.18e-61	72.60	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 P...	[more]
A0A6P4BI13	2.60e-60	69.03	F-box protein SNE OS=Ziziphus jujuba OX=326968 GN=LOC107432193 PE=4 SV=1	[more]

BLAST of Csor.00g279310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	5.7e-36	54.90	F-box family protein	[more]
AT4G24210.1	2.0e-12	35.77	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 27..65 e-value: 1.3E-4 score: 31.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 28..69 e-value: 8.8E-10 score: 38.3
None	No IPR available	GENE3D	1.20.1280.50		coord: 12..108 e-value: 2.5E-11 score: 45.3
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 8..156
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 28..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g279310.m01	Csor.00g279310.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding