Csor.00g278260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g278260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein 39-like
Location	Csor_Chr19: 9479870 .. 9490376 (-)
RNA-Seq Expression	Csor.00g278260
Synteny	Csor.00g278260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTCAGCGCCCAATCAGACGCTCGACAGTAAATCAGAACCCAAATTCCGCACCACAGCGTACCCTCCCAAGGAACTGTGACCCAGCGGGCGGAAGCACCAGCGCCAATCCAGTTATCCTCGTGCTGCGGGTTTTTGGCGCTTGTACTAAGCCACTGGAGGCTGTAGCTGGTGAGCGGAGCTCAAATTTGTTCGTGCTGTGGAGGTAATTCAACGTTTCTATGAAACTACTGGTTTCAGTTTGCGTTCGAGAATGGTGGCGAAGTGGAACTAATTGTTTGGCATTGAGAGCCGAAGGAGTTTTTTTTTCTTCATTCGTAATTAGGGCTTCACTTTTTGCGTAGCTTTAGTTTTTGAATTACTGTATCGTCTTGTGTCTTTGGCCGTCGGGACAGCACTTACGTGAGGTTACGATTAGGATTAGCTAGTTGAGTGGAGTTCTTGTTTAGCTGGAGGACGATTATGTTGTGGAGTCGGTCGATGGTTGTGAAGTTCTTGAGAACTATGATTATTTGTTTATTTACTTTTTTGCTTGTAGCTTTTCGCAGTTTCAAAGACGTGGTTAGCTGCCGTATGTTGCATTGTTCGCTTAAGAGACGGTAGTTATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAAGGACAGAAAGTGAAGGAAACTGCCAATGGCGGCGATGCAGAAATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCATAGTAGTGGTAAAGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGGTATTTTGTGCATTTATATTCTTGTACCATGAGTTTTGGTATTTAGAAGGAGAGAGAAGCAATAGATTACTTGTGTTGTTCTTATAATAACCTGCATACTCTAATGTTAAATTCTTTCATTGAGTAATTAAATTTGCATGTTATGTTGGTGGATTATTGAGATTGTTATGCTGCTTTGCTACACTTTATGATTTGGATTAGATATGACTCATGAGCATTCTAAATGAATGATGGTCGATGATGTTCATTCACCATTAAAAAGATTACTCTTGAATGCTATTGTATGATCATGAAATGATCAGTATGTATGAGCAATTTTACTCTCTAATCGCTTCAAGGAATAAGCTCACGGACTTGGCTTGTAGGGCAGCTGTAAGTCTTTGTCCAGTGATTGGATCTCTCCTTATTCTCCATACATCATCCTCTCCAAAAGCTTAAAGCCATATAAATGATGACCTCGTTTTGAAAGGTGAATGGTAGGTTAAGATATAGCCAATATGAGGACTAAGTCACTGGGAGTTATTGATTTTGCTCTGAGAAAACTTGCGTATCTTCAATTGCAGCTCATCGTGATGTATGGTGCTTTAAGGACATACTTGTCCTCTGTCATACTAGCTTGTTTTAATTAGTAATCACTCTTTTTAAGTGAACCTCAACTAGGTTTGGTATGAAATGCAGAAGTACATGTCATTCACTAGGTTTGCCCGTTTCTTTCCTTATTAAGTTTTACATTGTCGATAAATGGAACTGGCCCCATAGTGATATACTTAGGTAAAATAAAATTTTGATAATTGGAAGTTCATCTTCATAGCTTGCAAGTGTCTATAGTTGTCTGGTTTTCCAAAATTTCTCATACAATCTTAGTAATTAGGAAACCTCAGATGGACAAGACTGCCTGTTGTGTTGGTAGTAACTTTTTAGCAATTTTAATGGCAAAGGAATTCAATCCATTTCTAGTGCAACTATGAAGTTTGCTTTGGAGCTTTGTGTGTTTCAGTCATGGAGGTCATAAATAGTGGCCGTGACATGAAATCTTTGCACCATTACCACATTGAAATCCAAGATTTAATTTTGTATATATTCTGTTGAAGAAATGCTGGTGAGGGAATTGTGGGCTTTTCTTACGAGATGAATTCCCTCTTCTGATGCTTATGGAAAATTCAATATTCAGTGGCTACTGGATTCTCATCATATATGAAATTAATATTTCTTGTGCTTAGTGTTTGTCTAAAATTTTAAAGTTTCTAGATTCACCGTTGATGGTATTTTATATTTAGTTGTAGAAATTATTGTTTTTTAGAATTTATAGTAATTTGAACGTTTTTTTGGCTACCATTAATTGCAATCTAGTCCTCTGTGTCTACTTTCAGATATTCTCATCACTCCATTTTTATTTTTTTATTTTTATTAATTTCTAAATAACTACAGTTTTTTTCGAAGTTGAATTTCTAAAGATCATGCAGATCTTTGAATATTAATCTTGAGAATAAGTTTTTTCTTGATCACCAATTTCACTTATTGTGGTTGAGTATACACTGCATCCCATGAATACTCCAGTTGATGTTTTACATGCAGTATCATACAATAATTATTTCTTTCACCTATTGTATGGTTAATCCTTTCTATGGAGTATAAACTTTTAACGTGTTCTGTGTTAATTCTATTAGGTTCTTTGCTACTCTATCAATTCAACTTGATGACGCTGTTGTCATTTAAGAATTTATTATTTATGGAAGGTACAAAATCTGTGGTCAATCCATTGTGTGACCATCTTGGTCTGATTCTTAACTTTCCCAACTAGCACCACTATCTTTGTTTGTCAAATTAGTGGAAAGGGATTTTTCAAATCTCTCTGTTGGTTCAAACGTTAGTAGCCTACGGTGCTTTATTATAAGCTTTGCATAAAAAGTGGAAGATTATGTTCTGGATTATTCTTCTACTGTTGTCATAATTTAAGGGTAATTATCTCATTGTATTTTTATTTTTTATTTTTTTATTTCAAGATCTGTTTTTTTTTTCGCCCTTCTAAATAGCATTGTTTATAGTCCACTTCTAGGTGGTCTCTCATGACTTAATCATCCATCCGAAGGGCGTGGTTATAATTTTGCTAGCTAATAACAAAGGATGTCTTTGACCAATGTTTTTTTCCACCCCACAGAAGACATAAGGAGAAAAAGGAAGACGGAACAGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGGTAAACCTTCTATTGGGACATGATATATTCCAAAAAAATTTCTTATTGCATATTTTTAATAAAGTCAACTGACATTTTCTGTGATCTCTTGGCTAGATAAGTTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTTTGTATGCTCATCATATTGTTTCTACCACATTTTCATCTCTTTTAAGCTTCTCTTAGGACAGAATTTAGCTGCATTTTTTTTAGTTGAACTACTATAGTACATTGTAAAATGTACAACTAATCTATAGAAATCATACATCGTTATCAGTCTTTCCAAGTAACATCTCATGTATGATATAAGAAATTGGGTGTCCATAATAAAAATATGCTTCTATGTGTAGAATCTTTTATGATGGGGTTGGGGAAGGCTATGCGACATTTACAATTCATCCTTTGCATTTCCCATTCTTTCTGTTTTTGAAGCCTCTCCAATATTTGTGCTAGGTTCTATAAAAATTGTGAGACTTTCTCTTAGGTGTTGGGGAAGGTGGTTTTCTCAAGACAGGTAGGGGTCCATCTCTGAAGTTTCCGAGACTACAGGGACTGGGTTTTGGGAATGTGGGATCCTATGTGATAGCTTCCCTTAGAGATTCTTTATGGCATAAGATAAGAGAATAGTGGGTATATACAGATAATACACCTATGGGTAGGATTCAGGCTTGTTGGGTATCGACACTTCTAGGAACTCATTGAACTCATCATGTTTTTATTGTAGTAATCCATTGGTTGGTGAAGGTTCTTTGATTCATTTTTGGTAGGATCTTTACATTTGGAAATATCTGATAGGCCGATAGCAACTTTTGAACAATGTGTTGTAATCTTCTGGTTGGCTCAAGTCAGGCCCTAATTGTTCCTCTGTGTCTCAGAAAATTTATTCTTAATTTCCTCTTTATGAAGGCTGAGTTGCATATGTCTAGAAAAATCTCTCCTTCCTTCTATTTAAAATTTTAGTCCTAATTTCTTCGGAATGCAAGTTAAGTTTCTTAAATTTATAGAAATAAAATTCATCAGCCCAGCAAATCTCTCTCTTCTTTCTTTCGTCCTTTTTTATAAAAAATTATTTTGATTTTCTTCTATGTGGAAGTTGATTTTCTTATATCTATTGGGGAAATAAAAGTCATCAGCTTGGCAAATCATTCTGCTGTCCAATTTTTCTTTTCGTTTGTTGTCAGTAATTTCCTATATTATGTATCGCTCTAATTGATGGAACACAACTTACAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTAAGATTAGTGTGCTTGATGATGTTCACTTGGGTTGATTGGAGTTTGGACACTTTTGATTCATGTTGCCCCATATTTCATTGTTTTGATTAGTCTTAAATCCAATGCCACTACTTTTCAAATTTCAATGACTGTTTAAGACAAAATTTGATTGAACATACTTCCCGACCAAGAAGGAGATGAGTTTTAGACGGTGTATTATAGACAAAATGAAGAGGGAACAAATCAGATTCCGGGTGCGAATGGCGAAAACCCCGGTTCAGAACTACAAAAGGAGTGCCTTCCAATCATTAATAATCACCAAAAGACCCGCAGCTGCACTAACAAACTTTCCCCACATCCCACATCCCACGACCTGCTACTTGACTGTTTCAAAATCAAGCTGGTTTCTGATGAAAAGAACGGCATTTGGATTGCTGTATGTATCTGTAATTTATTCTTTATTTTCCTTGGATTTAATATCGTACCTATATGTGCAGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTAAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAAGCTCAATCAACTTCTGCTGCTGCTGGACCAGGTGGAGTAATGGGTCCCTACACTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGTCAGGTTTGTAAATGAATGTCACTGGACAGAATACATATGTTACACAGTACTAATAACTCTGTTGCGTGCATTTATCATGTTCTATGAAATCTTTCAGATTTATTTATTTTTCTGTCTATTGCTAAAAAAATTAACATTGTAATATTGGTGCCTTGCTTGGATAAGTTGATTTCCTTTGCTCTACTTCCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGGCATTGCAAGGGTTTTGGTTTTATTCAGGTGAAATATATATCTAGAGAATATTTTATTCTTTGAGAAGGACGCAAGCATTCTACGGTATAAGCTAATCAAATCTGTTTGAATGCAGTTCTCACGTCTTGAAGATGCTAGAAATGCATTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGATGCGTATTTTCATCTTATGTTCATGTTCATGTATTTTTATGTGCAAATTTTTTGCTATCGTGCTTGGTATGTTCTTTTTTGTTGCATTGAATAACAATCAAATGCTAATCCGCTATTTTATGCTGCATTAGTTATGAGAGTCTTCTTCTCATTTGTAAGGATTGGGGTATCTTCAATTGAGTGAATGTCTGTCTAGGGATAGATTTCAAAAGATTTACTTTGATCTTTTTATGTCTTGAGTTTTGAGCGTGAATTGTTGTCTTTCTTTGATGTATTTTATACTCCCCAGAAATGTGAGCCTTTCATCTGAGGGGTTAAGTTGTGACATCTCATGACTGATAGACTAGTGGGAGATCTCGGAGGTCCTGATCACTTGAGTTTCAAGGGTTGCAAGACACTTGAACCTGATGGCTTTTCTTTAAGGAATGATGAGACGTCATTAAATTAGATTGCTCGAGGTGTTCAATGAGTTATCGGAATTGGGTATAATTTTATGCTCTGATGCATGGGGGCTATTCTTCTCTCCACAAAGATAAATTAATGCAGAATCAAGACCTTGGACCATAAATTCAGTGACTTGCTTCTATAAAATCATTTCTAATACTATAGCGGGCAGGATGATGAAAGTGTTGCCACAAAGTATTTCTAACGATCAAGTGCTTTGTAGTTAGCAGACGAACGATTGTTGAACTTCTTACTCCGATTGAGGATTATAGAACGTGTAGACAAAAAGGTGCTATATTTAAAATGGTCATGAAAAGGCATGCACATGGTCATATGGTTTGGATTTTTTGAATTATGTTATGTGGAAGGCTTTGTATTAAATGAAGACATGAGATGCTTGGGGTTGGGTATTTAGGCTATCCATCTATCTATCTATTGGTGAGAAATCCAGCTTTCATTAAGAAAAAAATGGAAGTATATAAGATCATACAAAAAAGAGAGCCCACAAAAGACAGACAAACAAAACAATTCCCAAGGAGCAATTACAAAAATCTTTGTAAGTGAAGCGTACAAGGAAACATGGAACCTAATAAGGGACCAAAAACATTTGATGGAAGACGCTCTAGCTTTCTAAAGTTTCTATTGTTCCTTTCTTCCCGAAGTCCCTGCCAAACAGCACACGCCCACTTGCAATAACAACTTTCCTTTCTTACGAAAAAGAGGACGAAGAAGAACCACCTTGACACCCGGTTCTTGGAGTTAAATCTTCCATGGAGAACTTTCCAAACAAAAAACTTAACCTTCTTGAAAATTTTCACCATTCATAACGAGGCAAAGACCGAATCCCTCAAGGGAGAAGGGTTAACCAAACAAAGTAAAAGGATCTACCTGAAAATCCATCGTAGGGGCTAGAACACCAATAACGAAAATCCCTCCTAGAAGCAAATTGAGATTCCCTCAACATAAGAGGAGGGCAACAATGTTTTCTGATTCCCTCTATGACAACAAGCGGCAAAACCCCAAAATGGGAGCATGCTGAGCAAGAGCGTCAGCCATAGAATGATTCTTATTCTGGACATATGGTATAAACAAGGATAGCAGAGCCGGGGTGTCTATCCCCAACCACGTATCTTCCTAAAAAAAGTTTCCCTCTCCTCCCATCCAAACAACAGACAAATAAAGACAGGAAAGGATAATCTACAACTATAACTTTCCAAGGAGATCTGGAAGTGGCATCAATCCACTCAAGGTCCATATTTACTCATGATGAACCTCTCGAGTGATTTTATCATGTCTGTAGTTTCTACCTGGCAGCAGCTACTTCTTTTCAAACAAACTGTTAGGTTGCTTGCATTTTAGTTCATATGATCTATTAAGTCACCTGGCTTGTTTTCTTGTAACACCCTATTTTGTTTCCTTGTAACATGGATTTTTCTTTTCAAAACGAACTGTTAGGTTTCCGTTTTTTTTTTTTTTTTTTTTTATTGGTTCTTGATTACAAAGTGAGCTCCTTGTAATTTCTCTTGGGGATTTCTGTGTTTTTGTATGGTTGGTCTCTCATTGCATTTTCGTTCTCTTTTATGCCAGAGCATTTTTAATTAAAAATTGCGGAATTGTTGGTAACTAGATAAGAAAAGGGATTAATACATAACAGTTAACAAATATTGTAGATTATCCGATTCAGCAAGATTGGAGAGTAGTTTTCTCGTTGTGGGTGTTAGATTGATTACAGGCAAGCTGATAGCACGTAGGGAGCAACATTTAGTGTTCTAATACAGGAAATAATATTGTTGAAAGGGAAGTGGGAATGAACAACAGGTAGATGACTGGAAAGCTATTAAGACTATGATGAGGTTTCCTTTGAATGCGCCTTTTCTAATCAGCAGCATGGTAGCATGAGTAATCAAGTACAGTCAATTTTTTGGCTGGAATTATATCACGATATTTTTCTTATCTTCTTATACAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATTGGAGCAAGTACAGGAGACCTTGACGATGAAGATGGTGTTGGCTTGGTAAATAAGTCTTCTATCTTTGTTCCCTTCTCTCTCTCTCTAACAAAAGAAGCAAAGTTCTATCGCATCATTAATTAAAAAAAATCACCAAGAAAGTTGAGAGTTACGGATTTATGTCGAGTTGTAAGAGTACCTGAGCCATTGCTTCTATTATTGTTTGGAAGATTACACTTGTATTTATTTTTTTGTTCGTTCTTTCTGCTTTGTTAATGTTCAACCTGGTTTCTTGGACATGATCCATCGACAAGTAGCTTCTTAGCTCTTTCTTACTCCTTCATTTTCGTTATTTTTTTAAATATCATTTATTTGGTTTAGTCCATTGTTATTTGAATGGACCATTAGAGAATGAAGATTGGTATTTCTACCTCGATATGTGTTATTTTTATTTTTTTTGTTTTTTTAATTTTTAACACTAAGCTCTATTCTTAGAGAAATATTTAAGGTCTGTTTGGTAAGCAATCTGCTACCAAACACATATTTGGAAACATGAAATCTAACTCTATCTTCATCGAGTCCATTCTTTTCACATCTTTGTTTTCAGATTGACTACCAAAGAGGTAAGTTAACAAATATTTATCATTATTATTATTATTTTTTAAAGTTTGTGCCTGCGCAAGGGCCAAGCTCTAGAGATATCAAGACTTTTTCTTCATGTTTTATTTATGGTCTTTGGCTGTGGTGATACTATTTACATTTTTTTTTCTTTCTTTCGGGAAGTTTATTTTCTTGCTTCTGAATGTAAAAACTTAAGACATACGAGGTAAAGTGTAATAGTAACTACATTTATCATGAATGTTATCTACCGTTCTTTACACTTACCCCAAAGCTTTTGTAAGTTTCTGGTGCAAACTTTTGGTTAAGATTTCTTTGTGTATGCGTTAGCTGCTACATTAACAAAAGTGTTTTCAATTTTTCAGTCCTTAAATGCTAGTTCTCGAGCATCCCTGATGCAGAAACTGGACCGTACTGGCACTGCATCTAGGTTTGTGTTTGTTGAGCTTATTTTCATCTGAAAAGTTCCAATAAAAAATCATTTGAAGTTTGCATGTTGGTCTTATATCTGTTTCTCTGCAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTACCATGGCAATGGCGCCAATCCTTGGAGTTGGAACTATCCCTTCCCTAGGTGTTGCTACTTCTTTGGTCTCCGTCCCTGCTTTTCCTGGACTTGGTGCAGCAGGCGTTCAGGTTCCCACTGTTGCTGCTAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGGTATACTACATCATTCTAAAGATCTCCGTTAAATTTTCTGTTTATGTTTTACCTTTAATTCATTATCCCTTATGTTCGGCAGTTGGAACCCACTTTTGATATGGATATCAGAGACGACGTGGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATACGTTGACAAGTAAGTTTAGGACTTTAAATGTAACACCTGCTCATCGACGGCTCGATTCACAAGAGTTACCACTGACATAGATAATTTACGTCAAAAACCAGTCAAAAACCGATAACATTTTCATACCTAACGAGTAAAATATGTGAATCCAGTATTTTTTACAACACAAAAATAACCAGAGCAAGTTTCCAACAACGAAAGCATATGTACATAAAACAGTACTCGACTCACATGTTTTACTTGTTATGTATGAAAATGTTTTGGGTTTTATGATTCGTTTTTGAAGTAAATTATCTATCTCAATGGTAACTCTTGTGAATCGAGCTGCGGGTGTTTCAAGTTCATGAAATTGCATTACATATAGCTTTTAACAACTCCCCATTTCCTGAAACGTAGCTTCTTCATTTCTTCTTCATGGACAGGAATAGTGCCGGTTTTGTATACTTGAGATTTGCAAATTCAGAGGCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGCGCAACTTTCATGGTAATTCTTTGGTCATTGTCTTTACCTTATCTGTTAGAACAACGATTCTAACTTTTTAAGGAATTTCTTTTATATCTTCAGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG

mRNA sequence

ATGGGCTTTCAGCGCCCAATCAGACGCTCGACAGTAAATCAGAACCCAAATTCCGCACCACAGCGTACCCTCCCAAGGAACTGTGACCCAGCGGGCGGAAGCACCAGCGCCAATCCAGTTATCCTCGTGCTGCGGGTTTTTGGCGCTTGTACTAAGCCACTGGAGGCTGTAGCTGGTGAGCGGAGCTCAAATTTGTTCGTGCTGTGGAGTTTCAAAGACGTGGTTAGCTGCCAGAAAACAGTTGAAAATCCCGAAGGACAGAAAGTGAAGGAAACTGCCAATGGCGGCGATGCAGAAATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCATAGTAGTGGTAAAGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGAAGACATAAGGAGAAAAAGGAAGACGGAACAGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTAAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAAGCTCAATCAACTTCTGCTGCTGCTGGACCAGGTGGAGTAATGGGTCCCTACACTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGGCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCATTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATTGGAGCAAGTACAGGAGACCTTGACGATGAAGATGGTGTTGGCTTGTCCTTAAATGCTAGTTCTCGAGCATCCCTGATGCAGAAACTGGACCGTACTGGCACTGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTACCATGGCAATGGCGCCAATCCTTGGAGTTGGAACTATCCCTTCCCTAGGTGTTGCTACTTCTTTGGTCTCCGTCCCTGCTTTTCCTGGACTTGGTGCAGCAGGCGTTCAGGTTCCCACTGTTGCTGCTAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTTGGAACCCACTTTTGATATGGATATCAGAGACGACGTGGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATACGTTGACAAGAATAGTGCCGGTTTTGTATACTTGAGATTTGCAAATTCAGAGGCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGCGCAACTTTCATGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG

Coding sequence (CDS)

ATGGGCTTTCAGCGCCCAATCAGACGCTCGACAGTAAATCAGAACCCAAATTCCGCACCACAGCGTACCCTCCCAAGGAACTGTGACCCAGCGGGCGGAAGCACCAGCGCCAATCCAGTTATCCTCGTGCTGCGGGTTTTTGGCGCTTGTACTAAGCCACTGGAGGCTGTAGCTGGTGAGCGGAGCTCAAATTTGTTCGTGCTGTGGAGTTTCAAAGACGTGGTTAGCTGCCAGAAAACAGTTGAAAATCCCGAAGGACAGAAAGTGAAGGAAACTGCCAATGGCGGCGATGCAGAAATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCATAGTAGTGGTAAAGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGAAGACATAAGGAGAAAAAGGAAGACGGAACAGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTAAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAAGCTCAATCAACTTCTGCTGCTGCTGGACCAGGTGGAGTAATGGGTCCCTACACTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGGCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCATTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATTGGAGCAAGTACAGGAGACCTTGACGATGAAGATGGTGTTGGCTTGTCCTTAAATGCTAGTTCTCGAGCATCCCTGATGCAGAAACTGGACCGTACTGGCACTGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTACCATGGCAATGGCGCCAATCCTTGGAGTTGGAACTATCCCTTCCCTAGGTGTTGCTACTTCTTTGGTCTCCGTCCCTGCTTTTCCTGGACTTGGTGCAGCAGGCGTTCAGGTTCCCACTGTTGCTGCTAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTTGGAACCCACTTTTGATATGGATATCAGAGACGACGTGGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATACGTTGACAAGAATAGTGCCGGTTTTGTATACTTGAGATTTGCAAATTCAGAGGCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGCGCAACTTTCATGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG

Protein sequence

MGFQRPIRRSTVNQNPNSAPQRTLPRNCDPAGGSTSANPVILVLRVFGACTKPLEAVAGERSSNLFVLWSFKDVVSCQKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR

Homology

[Close]

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.3e-61
Identity = 204/537 (37.99%), Postives = 288/537 (53.63%), Query Frame = 0


Query: 129 KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 188
           K E++    + H +R+  R +S+SR R  +R  S  + R K  R++ +++  S++R   R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKER-KRSRDRERKKSKSRERKRSR 76

Query: 189 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRT-RDNEFREREKERE 248
            KER     RR R     R R+R  R R  S       + +IR +    +  +   +   
Sbjct: 77  SKER-----RRSR----SRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSR 136

Query: 249 SRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVR 308
           S+   R  +    +  D   PE   ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR
Sbjct: 137 SKSPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVR 196

Query: 309 LIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAG 368
           +I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+A + +    
Sbjct: 197 MISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ 256

Query: 369 PGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLD-ESGHCKGFGFIQ 428
            G      + G  RLYVG+LH NITED LR +F  FG +E +Q+ +D E+G  KG+GFI 
Sbjct: 257 KG------SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFIT 316

Query: 429 FSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSR 488
           FS  E A+ AL      E+AGR +KV  VT++       +S  D D+ +  G+ L  + R
Sbjct: 317 FSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTGR 376

Query: 489 ASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPG 548
             LM +L         A   G  +       + M+  L  G +  L   T L        
Sbjct: 377 LQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVADL--QTRLSQQTEASA 436

Query: 549 LGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLK 608
           L AA    P            ++C  L NMF+P  E E  +D +I+DDV EEC++ G + 
Sbjct: 437 LAAAASVQPLA----------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI 496

Query: 609 HIYVDKNSA-GFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 663
           HIYVDKNSA G VY++  +  AA+ A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 HIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 512

[Close]

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-60
Identity = 203/540 (37.59%), Postives = 289/540 (53.52%), Query Frame = 0


Query: 129 KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 188
           K E++    + H +R+  R +S+SR R  +R  S  + R K  R++ +++  S++R   R
Sbjct: 17  KDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKER-KRSRDRERKKSKSRERKRSR 76

Query: 189 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRT-RDNEFREREKERE 248
            KER     RR R     R R+R  R R  S       + +IR +    +  +   +   
Sbjct: 77  SKER-----RRSR----SRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSR 136

Query: 249 SRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVR 308
           S+   R  +    +  D   PE   ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR
Sbjct: 137 SKSPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVR 196

Query: 309 LIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAG 368
           +I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+A + +    
Sbjct: 197 MISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ 256

Query: 369 PGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLD-ESGHCKGFGFIQ 428
            G      + G  RLYVG+LH NITED LR +F  FG +E +Q+ +D E+G  KG+GFI 
Sbjct: 257 KG------SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFIT 316

Query: 429 FSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSR 488
           FS  E A+ AL      E+AGR +KV  VT++       +S  D D+ +  G+ L  + R
Sbjct: 317 FSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTGR 376

Query: 489 ASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSL---VSVPA 548
             LM +L         A   G  +       + M+  L  G +        L   +S   
Sbjct: 377 LQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT 436

Query: 549 FPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFG 608
                AA   V  +A         ++C  L NMF+P  E E  +D +I+DDV EEC++ G
Sbjct: 437 EASALAAAASVQPLA---------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 496

Query: 609 KLKHIYVDKNSA-GFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 663
            + HIYVDKNSA G VY++  +  AA+ A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 518

[Close]

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-60
Identity = 203/540 (37.59%), Postives = 289/540 (53.52%), Query Frame = 0


Query: 129 KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 188
           K E++    + H +R+  R +S+SR R  +R  S  + R K  R++ +++  S++R   R
Sbjct: 17  KDENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKER-KRSRDRERKKSKSRERKRSR 76

Query: 189 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRT-RDNEFREREKERE 248
            KER     RR R     R R+R  R R  S       + +IR +    +  +   +   
Sbjct: 77  SKER-----RRSR----SRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSR 136

Query: 249 SRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVR 308
           S+   R  +    +  D   PE   ERD RTVF  Q++ +   RD+ EFFS  GKVRDVR
Sbjct: 137 SKSPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVR 196

Query: 309 LIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAG 368
           +I DRNSRRSKG+ YVEFVD  SVP+AI L+GQ +L  P++V+ S+AEKN+A + +    
Sbjct: 197 MISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ 256

Query: 369 PGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLD-ESGHCKGFGFIQ 428
            G      + G  RLYVG+LH NITED LR +F  FG +E +Q+ +D E+G  KG+GFI 
Sbjct: 257 KG------SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFIT 316

Query: 429 FSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSR 488
           FS  E A+ AL      E+AGR +KV  VT++       +S  D D+ +  G+ L  + R
Sbjct: 317 FSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASS-ASSFLDSDELERTGIDLGTTGR 376

Query: 489 ASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSL---VSVPA 548
             LM +L         A   G  +       + M+  L  G +        L   +S   
Sbjct: 377 LQLMARL---------AEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT 436

Query: 549 FPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFG 608
                AA   V  +A         ++C  L NMF+P  E E  +D +I+DDV EEC++ G
Sbjct: 437 EASALAAAASVQPLA---------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG 496

Query: 609 KLKHIYVDKNSA-GFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDS 663
            + HIYVDKNSA G VY++  +  AA+ A  AL+GRWFAGKMI A ++ +P+Y   FPDS
Sbjct: 497 GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 518

[Close]

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 6.7e-37
Identity = 168/564 (29.79%), Postives = 258/564 (45.74%), Query Frame = 0


Query: 108 SRSSKYKTDGKDDGEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFR 167
           +RSSK     +D G        ++D   +   HR   + RH  RS     D  S      
Sbjct: 85  ARSSKQSFQREDSG-------YNDDVVTNSSSHR---TPRHHRRSYSPRSDYGSRSPSPH 144

Query: 168 GKEDREKNQEERSSKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRD 227
              D  +++    S+DRD      R      R R    D  R   + SR    R R +  
Sbjct: 145 SSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEER 204

Query: 228 ESIRQRTRDNEFREREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLK 287
            S   R  D ++ +   +  S ER R   R +E+    +E     ERD+RTVF  Q++ +
Sbjct: 205 SSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSE----EERDRRTVFVSQLANR 264

Query: 288 ATERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPV 347
            T R++++FF +AG VRD +++ D+ S RSKGV YVEF    SV  AIALSG+ LL  PV
Sbjct: 265 LTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPV 324

Query: 348 MVKPSEAEKN-QAQSTSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIV 407
           +V+ +EAEKN +A+  +  A       P+     RL V N+H N+T+++++ +F  FG +
Sbjct: 325 IVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNIHFNLTDEDVKAIFEPFGDI 384

Query: 408 ELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGA 467
           E V +  D+    KGFG+IQ+     ARNAL      ++AGR ++V    D+   +   +
Sbjct: 385 EFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSS 444

Query: 468 STGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGV 527
                D+           +R    Q   R G +S+            +       PI   
Sbjct: 445 MLKRFDE---------TLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRD 504

Query: 528 GTIPSLGVA------TSLVSVPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPT 587
             +  L  +      + LVS P  P                      S C LL+NMF+P 
Sbjct: 505 ELMKKLARSEDISDNSKLVSEPEPP--------------------IRSRCALLENMFNPA 564

Query: 588 AELEPTFDMDIRDDVEEEC-SRFGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRW 647
            E  P +  ++  DV+EEC  ++GK+ HI V  N  G ++++F N++ A  A   L+ RW
Sbjct: 565 EETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRW 601

Query: 648 FAGKMIGATFMDIPSYEAKFPDSR 664
           F G+ I A+ +    Y  KFP+++
Sbjct: 625 FGGRTIKASILPETDYYFKFPNAK 601

[Close]

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-32
Identity = 155/432 (35.88%), Postives = 213/432 (49.31%), Query Frame = 0


Query: 129 KSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDR 188
           K EDE    +  +D  S+   S S        +SG E  G     +  +++ S+  +  R
Sbjct: 20  KEEDEQQRKEVKKDYPSNTTSSTS--------NSGNETSGSSTIGETSKKKRSRSHNKSR 79

Query: 189 DKERVHDHDRRGRDGEKDRERERSHRSRSHSE--RHRS---DRDESIRQRTRDNEFRERE 248
           D++R    DR       DR R R+ RSRS     RHRS   DR      R+RD+   +R 
Sbjct: 80  DRKRSRSRDR-------DRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRV 139

Query: 249 KERE-----SRERGRDGRRHKEKKEDGTEPE---ADPERDQRTVFAYQISLKATERDVFE 308
             R          G     H  +K    EP    +  ERD RTVF  Q++ +   RD+ +
Sbjct: 140 HYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLED 199

Query: 309 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAE 368
           FFS  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+AI L+GQ LL  P++V+ S+AE
Sbjct: 200 FFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 259

Query: 369 KNQAQSTSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVE-LVQMPLD 428
           KN+  + +     G       GG  RLYVG+LH NITED LR +F  FG ++ +V M   
Sbjct: 260 KNRLAAMANNLQKG------NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS 319

Query: 429 ESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQ-PGLQDIGASTGDLDD 488
           ++G  KG+GFI FS  E AR AL      E+AGR ++V  VT++  G  DI    GD + 
Sbjct: 320 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQEL 379

Query: 489 EDGVGLSLNASSRASLMQKL---------DRTGTASSIAGSLGTHVVNNTGATMAMAPIL 537
           + G     +A  R  LM KL              A++ A       +N      A+ P  
Sbjct: 380 DLG-----SAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAA 425

[Close]

BLAST of Csor.00g278260 vs. NCBI nr
Match: KAG6572123.1 (RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1229 bits (3181), Expect = 0.0
Identity = 663/663 (100.00%), Postives = 663/663 (100.00%), Query Frame = 0


Query: 1   MGFQRPIRRSTVNQNPNSAPQRTLPRNCDPAGGSTSANPVILVLRVFGACTKPLEAVAGE 60
           MGFQRPIRRSTVNQNPNSAPQRTLPRNCDPAGGSTSANPVILVLRVFGACTKPLEAVAGE
Sbjct: 1   MGFQRPIRRSTVNQNPNSAPQRTLPRNCDPAGGSTSANPVILVLRVFGACTKPLEAVAGE 60

Query: 61  RSSNLFVLWSFKDVVSCQKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDD 120
           RSSNLFVLWSFKDVVSCQKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDD
Sbjct: 61  RSSNLFVLWSFKDVVSCQKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDD 120

Query: 121 GEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERS 180
           GEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERS
Sbjct: 121 GEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERS 180

Query: 181 SKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFR 240
           SKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFR
Sbjct: 181 SKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFR 240

Query: 241 EREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRA 300
           EREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRA
Sbjct: 241 EREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRA 300

Query: 301 GKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQ 360
           GKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQ
Sbjct: 301 GKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQ 360

Query: 361 STSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCK 420
           STSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCK
Sbjct: 361 STSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCK 420

Query: 421 GFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLS 480
           GFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLS
Sbjct: 421 GFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLS 480

Query: 481 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVS 540
           LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVS
Sbjct: 481 LNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVS 540

Query: 541 VPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECS 600
           VPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECS
Sbjct: 541 VPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECS 600

Query: 601 RFGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFP 660
           RFGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFP
Sbjct: 601 RFGKLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFP 660

Query: 661 DSR 663
           DSR
Sbjct: 661 DSR 663

[Close]

BLAST of Csor.00g278260 vs. NCBI nr
Match: XP_022953124.1 (RNA-binding protein 39-like [Cucurbita moschata] >XP_022953126.1 RNA-binding protein 39-like [Cucurbita moschata] >XP_023554691.1 RNA-binding protein 39-like [Cucurbita pepo subsp. pepo] >XP_023554692.1 RNA-binding protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1074 bits (2778), Expect = 0.0
Identity = 585/586 (99.83%), Postives = 586/586 (100.00%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH
Sbjct: 10  EKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD
Sbjct: 70  DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR
Sbjct: 130 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
           TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV
Sbjct: 430 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
           AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of Csor.00g278260 vs. NCBI nr
Match: XP_022969035.1 (RNA-binding protein 39 [Cucurbita maxima] >XP_022969036.1 RNA-binding protein 39 [Cucurbita maxima])

HSP 1 Score: 1071 bits (2770), Expect = 0.0
Identity = 583/586 (99.49%), Postives = 585/586 (99.83%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH
Sbjct: 10  EKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD
Sbjct: 70  DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGEKDRERERSHRSRSHSERHRSDRDES+RQRTRDNEFREREKERESRERGRDGRR
Sbjct: 130 RRGRDGEKDRERERSHRSRSHSERHRSDRDESMRQRTRDNEFREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
           TASSIAGSLGTHVVNNTGATM MAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV
Sbjct: 430 TASSIAGSLGTHVVNNTGATMPMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
           AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of Csor.00g278260 vs. NCBI nr
Match: XP_008447936.1 (PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo] >XP_016900486.1 PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo])

HSP 1 Score: 948 bits (2450), Expect = 0.0
Identity = 522/586 (89.08%), Postives = 547/586 (93.34%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGD EMKSGDKH SRS KYK+DGKDDGEHRSKRSKS+DES D 
Sbjct: 10  EKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRSKSDDESRDR 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSR+RDRD+H S KE RGK+DRE N+EERSSKDRDVDRDKER HD D
Sbjct: 70  DRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDRD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGE++RERERS RSRS SERHRSDRD+ IR+R+RDNE REREKERESRERGRDGRR
Sbjct: 130 RRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           +K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GPGG MGPY+G
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFG VELVQMPLDESGHCKGFGFIQF+RLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFTRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
            ASSIAGSLGTHVVNNTGATM  APILG  TIPSLGV TSL + PAFPGLGA GVQVP V
Sbjct: 430 AASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAFPAFPGLGA-GVQVPPV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
            ANLLGVGTPSECLLLKNMFDPTAE EPTFD+DIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 TANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRF   E+A +AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of Csor.00g278260 vs. NCBI nr
Match: XP_011658601.1 (RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744309.1 RNA-binding protein 39 isoform X1 [Cucumis sativus] >KGN43267.1 hypothetical protein Csa_020331 [Cucumis sativus])

HSP 1 Score: 946 bits (2446), Expect = 0.0
Identity = 521/586 (88.91%), Postives = 547/586 (93.34%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGD EMKSGDKH SRSSKYK+DGKDDGEHRSK  KS+DES D 
Sbjct: 10  EKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHLKSDDESRDR 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSR+RDRDRH S KE RGKEDRE N+EERSSKDRDVDRDKER HD D
Sbjct: 70  DRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDRDKERSHDRD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGE++RERE+S RSRS SERHRSDRD+ IR+R+RDNE REREKERESRERGRDGRR
Sbjct: 130 RRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           +K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 YKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GPGG MGPY+G
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFG VELVQMP+DESGHCKGFGFIQF+RLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDESGHCKGFGFIQFTRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
            ASSIAGSLGTHVVNNTGATM  APILG  TIPSL V TSL + PAFPGLGA GVQVP V
Sbjct: 430 AASSIAGSLGTHVVNNTGATMP-APILGGATIPSLSVGTSLAAFPAFPGLGA-GVQVPPV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
            ANLLGVGTPSECLLLKNMFDPTAE EPTFD+DIRDDVEEECSRFGKLKHIYVD+NSAGF
Sbjct: 490 TANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDRNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRF  SE+AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL
Match: A0A6J1GM48 (RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 SV=1)

HSP 1 Score: 1074 bits (2778), Expect = 0.0
Identity = 585/586 (99.83%), Postives = 586/586 (100.00%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH
Sbjct: 10  EKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD
Sbjct: 70  DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR
Sbjct: 130 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
           TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV
Sbjct: 430 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
           AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL
Match: A0A6J1HYU3 (RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1)

HSP 1 Score: 1071 bits (2770), Expect = 0.0
Identity = 583/586 (99.49%), Postives = 585/586 (99.83%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH
Sbjct: 10  EKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD
Sbjct: 70  DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGEKDRERERSHRSRSHSERHRSDRDES+RQRTRDNEFREREKERESRERGRDGRR
Sbjct: 130 RRGRDGEKDRERERSHRSRSHSERHRSDRDESMRQRTRDNEFREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
           TASSIAGSLGTHVVNNTGATM MAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV
Sbjct: 430 TASSIAGSLGTHVVNNTGATMPMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
           AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 595

[Close]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL
Match: A0A1S3BIJ5 (RNA-binding protein 39 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 SV=1)

HSP 1 Score: 948 bits (2450), Expect = 0.0
Identity = 522/586 (89.08%), Postives = 547/586 (93.34%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGD EMKSGDKH SRS KYK+DGKDDGEHRSKRSKS+DES D 
Sbjct: 10  EKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRSKSDDESRDR 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSR+RDRD+H S KE RGK+DRE N+EERSSKDRDVDRDKER HD D
Sbjct: 70  DRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDRD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGE++RERERS RSRS SERHRSDRD+ IR+R+RDNE REREKERESRERGRDGRR
Sbjct: 130 RRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           +K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GPGG MGPY+G
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFG VELVQMPLDESGHCKGFGFIQF+RLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFTRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
            ASSIAGSLGTHVVNNTGATM  APILG  TIPSLGV TSL + PAFPGLGA GVQVP V
Sbjct: 430 AASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAFPAFPGLGA-GVQVPPV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
            ANLLGVGTPSECLLLKNMFDPTAE EPTFD+DIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 TANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRF   E+A +AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL
Match: A0A0A0K4Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1)

HSP 1 Score: 946 bits (2446), Expect = 0.0
Identity = 521/586 (88.91%), Postives = 547/586 (93.34%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGD EMKSGDKH SRSSKYK+DGKDDGEHRSK  KS+DES D 
Sbjct: 10  EKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGEHRSKHLKSDDESRDR 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSR+RDRDRH S KE RGKEDRE N+EERSSKDRDVDRDKER HD D
Sbjct: 70  DRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNREERSSKDRDVDRDKERSHDRD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGE++RERE+S RSRS SERHRSDRD+ IR+R+RDNE REREKERESRERGRDGRR
Sbjct: 130 RRGRDGERNREREQSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRR 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           +K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 YKDKKDETAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GPGG MGPY+G
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFG VELVQMP+DESGHCKGFGFIQF+RLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDESGHCKGFGFIQFTRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
            ASSIAGSLGTHVVNNTGATM  APILG  TIPSL V TSL + PAFPGLGA GVQVP V
Sbjct: 430 AASSIAGSLGTHVVNNTGATMP-APILGGATIPSLSVGTSLAAFPAFPGLGA-GVQVPPV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
            ANLLGVGTPSECLLLKNMFDPTAE EPTFD+DIRDDVEEECSRFGKLKHIYVD+NSAGF
Sbjct: 490 TANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDRNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRF  SE+AM+AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 593

[Close]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL
Match: A0A1S3BJ70 (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 SV=1)

HSP 1 Score: 942 bits (2435), Expect = 0.0
Identity = 521/586 (88.91%), Postives = 546/586 (93.17%), Query Frame = 0


Query: 78  QKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDH 137
           +KTVENPEGQKVKETANGGD EMKSGDKH SRS KYK+DGKDDGEHRSKRSKS+DES D 
Sbjct: 10  EKTVENPEGQKVKETANGGDGEMKSGDKHYSRSLKYKSDGKDDGEHRSKRSKSDDESRDR 69

Query: 138 DRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHD 197
           DRHRDRTSSRHRSRSR+RDRD+H S KE RGK+DRE N+EERSSKDRDVDRDKER HD D
Sbjct: 70  DRHRDRTSSRHRSRSRERDRDKHRSSKENRGKDDREGNREERSSKDRDVDRDKERSHDRD 129

Query: 198 RRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRR 257
           RRGRDGE++RERERS RSRS SERHRSDRD+ IR+R+RDNE REREKERESRERGRDGR 
Sbjct: 130 RRGRDGERNRERERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGR- 189

Query: 258 HKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRS 317
           +K+KK++  EPEADPERDQRTVFAYQISLKATERDV+EFFSRAGKVRDVRLIMDRNSRRS
Sbjct: 190 YKDKKDEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRS 249

Query: 318 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTG 377
           KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQ QSTSAA GPGG MGPY+G
Sbjct: 250 KGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSG 309

Query: 378 GARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNAL 437
           GARRLYVGNLHPNITEDNLRQVFGAFG VELVQMPLDESGHCKGFGFIQF+RLEDARNAL
Sbjct: 310 GARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFTRLEDARNAL 369

Query: 438 SLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTG 497
           SLNGQLEIAGR IKVSTVTDQPGLQD+GASTGDLD+EDG GLSLNASSRASLMQKLDRTG
Sbjct: 370 SLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTG 429

Query: 498 TASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTV 557
            ASSIAGSLGTHVVNNTGATM  APILG  TIPSLGV TSL + PAFPGLGA GVQVP V
Sbjct: 430 AASSIAGSLGTHVVNNTGATMP-APILGGATIPSLGVGTSLAAFPAFPGLGA-GVQVPPV 489

Query: 558 AANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGF 617
            ANLLGVGTPSECLLLKNMFDPTAE EPTFD+DIRDDVEEECSRFGKLKHIYVDKNSAGF
Sbjct: 490 TANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGF 549

Query: 618 VYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 663
           VYLRF   E+A +AQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR
Sbjct: 550 VYLRFEKPESATEAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 592

[Close]

BLAST of Csor.00g278260 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 592.8 bits (1527), Expect = 3.4e-169
Identity = 372/600 (62.00%), Postives = 440/600 (73.33%), Query Frame = 0


Query: 71  FKDVVSCQKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSK 130
           F +    +KTVENP  +   E  N GGD ++KS  K RSRSS+          HR  + K
Sbjct: 3   FDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDKKK 62

Query: 131 SEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREK--NQEERSSKDRDVD 190
             DE  D  R   R+ S HRSRSRDR+RDRH S +E R + DREK  ++EER+ KDR+ D
Sbjct: 63  ERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDR-DREKDVDKEERNGKDRERD 122

Query: 191 RDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERE 250
           RDK+R    D +GRD EKDR R    RSRS SERHRS        + R+       KERE
Sbjct: 123 RDKDR----DSKGRDHEKDRSR----RSRSRSERHRS--------QEREKSLEIEPKERE 182

Query: 251 SRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVR 310
           +++R RD RRHK+KKED  EPEADPERDQRTVFAYQI+L+ATERDV+EFFSRAGKVRDVR
Sbjct: 183 TKDRDRDRRRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVR 242

Query: 311 LIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAG 370
           +IMDR SRRS+G+GYVEF D MSVPMAIALSGQ LL QPVMVKPSEAEKN  QST+AAAG
Sbjct: 243 IIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAG 302

Query: 371 PGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQF 430
            GG++GPY+GGARRLYVGNLH N++ED+LR+VF +FG VELVQ+P DE+G CKGFGF+QF
Sbjct: 303 AGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQF 362

Query: 431 SRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIG--ASTGDLDDEDGVGLSLNASS 490
           +RLEDARNAL+LNGQLEIAGR IKVS VTDQ  + + G   +TGDLDD+DG GLSLNA S
Sbjct: 363 ARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQS 422

Query: 491 RASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLV--SVPA 550
           RA LMQKLDR+GTASS            TG T A +   GV TI SL  A +LV  S PA
Sbjct: 423 RALLMQKLDRSGTASS------------TGLTTAASFNGGVSTISSL-AAPALVQGSFPA 482

Query: 551 FPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFG 610
             GL  +G+    + A    +G PSECLLLKNMFDP+ E E  FD DI++DV+EECS+FG
Sbjct: 483 VAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFG 542

Query: 611 KLKHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 664
           KL HI+VDKNS GFVYLRF N++AA+ AQRAL+GRWFAGKMI AT+M   +YEAKFP+S+
Sbjct: 543 KLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK 559

[Close]

BLAST of Csor.00g278260 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 569.7 bits (1467), Expect = 3.1e-162
Identity = 372/638 (58.31%), Postives = 440/638 (68.97%), Query Frame = 0


Query: 71  FKDVVSCQKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSK 130
           F +    +KTVENP  +   E  N GGD ++KS  K RSRSS+          HR  + K
Sbjct: 3   FDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDKKK 62

Query: 131 SEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREK--NQEERSSKDRDVD 190
             DE  D  R   R+ S HRSRSRDR+RDRH S +E R + DREK  ++EER+ KDR+ D
Sbjct: 63  ERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDR-DREKDVDKEERNGKDRERD 122

Query: 191 RDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERE 250
           RDK+R    D +GRD EKDR R    RSRS SERHRS        + R+       KERE
Sbjct: 123 RDKDR----DSKGRDHEKDRSR----RSRSRSERHRS--------QEREKSLEIEPKERE 182

Query: 251 SRERGRDGR-----------------------------RHKEKKEDGTEPEADPERDQRT 310
           +++R RD R                             RHK+KKED  EPEADPERDQRT
Sbjct: 183 TKDRDRDRRFILMLLGPLVLPSVQLDGALPCRDFSCFIRHKDKKEDKVEPEADPERDQRT 242

Query: 311 VFAYQISLKATERDVFEFFSRAGK---------VRDVRLIMDRNSRRSKGVGYVEFVDAM 370
           VFAYQI+L+ATERDV+EFFSRAGK         VRDVR+IMDR SRRS+G+GYVEF D M
Sbjct: 243 VFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDTM 302

Query: 371 SVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTGGARRLYVGNLHP 430
           SVPMAIALSGQ LL QPVMVKPSEAEKN  QST+AAAG GG++GPY+GGARRLYVGNLH 
Sbjct: 303 SVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHI 362

Query: 431 NITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRM 490
           N++ED+LR+VF +FG VELVQ+P DE+G CKGFGF+QF+RLEDARNAL+LNGQLEIAGR 
Sbjct: 363 NMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRA 422

Query: 491 IKVSTVTDQPGLQDIG--ASTGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAGSLG 550
           IKVS VTDQ  + + G   +TGDLDD+DG GLSLNA SRA LMQKLDR+GTASS      
Sbjct: 423 IKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASS------ 482

Query: 551 THVVNNTGATMAMAPILGVGTIPSLGVATSLV--SVPAFPGLGAAGVQVPTVAANLLGVG 610
                 TG T A +   GV TI SL  A +LV  S PA  GL  +G+    + A    +G
Sbjct: 483 ------TGLTTAASFNGGVSTISSL-AAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIG 542

Query: 611 TPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFANS 664
            PSECLLLKNMFDP+ E E  FD DI++DV+EECS+FGKL HI+VDKNS GFVYLRF N+
Sbjct: 543 VPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENA 597

[Close]

BLAST of Csor.00g278260 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 567.8 bits (1462), Expect = 1.2e-161
Identity = 370/641 (57.72%), Postives = 445/641 (69.42%), Query Frame = 0


Query: 71  FKDVVSCQKTVENPEGQKVKETAN-GGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSK 130
           F +    +KTVENP  +   E  N GGD ++KS  K RSRSS+          HR  + K
Sbjct: 3   FDEYEYLEKTVENPHLE--NEVGNGGGDEKVKSEGKERSRSSR----------HRGDKKK 62

Query: 131 SEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREK--NQEERSSKDRDVD 190
             DE  D  R   R+ S HRSRSRDR+RDRH S +E R + DREK  ++EER+ KDR+ D
Sbjct: 63  ERDEDED-GRRSKRSRSHHRSRSRDRERDRHRSSREHRDR-DREKDVDKEERNGKDRERD 122

Query: 191 RDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRS-DRDESIRQRTRDNEFREREKER 250
           RDK+R    D +GRD EKDR R    RSRS SERHRS +R++S+    ++ E ++R+++R
Sbjct: 123 RDKDR----DSKGRDHEKDRSR----RSRSRSERHRSQEREKSLEIEPKERETKDRDRDR 182

Query: 251 -----------------------------------ESRERGRD-----GRRHKEKKEDGT 310
                                              E   R         +RHK+KKED  
Sbjct: 183 RYTSELVIDFIIYVHWYCLLYNLMGHVPFKIIIVIEGTSRASCVYAYWRKRHKDKKEDKV 242

Query: 311 EPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFV 370
           EPEADPERDQRTVFAYQI+L+ATERDV+EFFSRAGKVRDVR+IMDR SRRS+G+GYVEF 
Sbjct: 243 EPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 302

Query: 371 DAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTGGARRLYVGN 430
           D MSVPMAIALSGQ LL QPVMVKPSEAEKN  QST+AAAG GG++GPY+GGARRLYVGN
Sbjct: 303 DTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGN 362

Query: 431 LHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIA 490
           LH N++ED+LR+VF +FG VELVQ+P DE+G CKGFGF+QF+RLEDARNAL+LNGQLEIA
Sbjct: 363 LHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIA 422

Query: 491 GRMIKVSTVTDQPGLQDIG--ASTGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAG 550
           GR IKVS VTDQ  + + G   +TGDLDD+DG GLSLNA SRA LMQKLDR+GTASS   
Sbjct: 423 GRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASS--- 482

Query: 551 SLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLV--SVPAFPGLGAAGVQVPTVAANLL 610
                    TG T A +   GV TI SL  A +LV  S PA  GL  +G+    + A   
Sbjct: 483 ---------TGLTTAASFNGGVSTISSL-AAPALVQGSFPAVAGLAGSGIIPGVIPAGFD 542

Query: 611 GVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRF 664
            +G PSECLLLKNMFDP+ E E  FD DI++DV+EECS+FGKL HI+VDKNS GFVYLRF
Sbjct: 543 PIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRF 602

[Close]

BLAST of Csor.00g278260 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 448.7 bits (1153), Expect = 7.9e-126
Identity = 310/593 (52.28%), Postives = 374/593 (63.07%), Query Frame = 0


Query: 71  FKDVVSCQKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDG-EHRSKRSK 130
           F +    +KTVE   G   K+  +G +   +S  K      + +  G+++    RSK+S+
Sbjct: 3   FDEYEYLEKTVEEGAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSKKSR 62

Query: 131 SEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKE-DREKNQEERSSKDRDVDR 190
            + E  +    RDR   RHRS SRD+DR+R    +  R KE DRE++ +ER   DRD  R
Sbjct: 63  GDGEE-NGGGKRDRERERHRS-SRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPR 122

Query: 191 DKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERES 250
           D+ER              RERE+   SRS                      R  EKE E 
Sbjct: 123 DRER--------------REREKRSSSRS----------------------RREEKEPEV 182

Query: 251 RERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRL 310
            ERG   RRH++KK+   EPEADPERDQRTVFAYQ+ LKATERDV+EFFS+AGKVRDVRL
Sbjct: 183 VERG--SRRHRDKKD---EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL 242

Query: 311 IMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGP 370
           IMDRNSRRSKGVGY+EF D MSVPMAIALSGQL L QPVMVKPSEAEKN AQS S   G 
Sbjct: 243 IMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGG 302

Query: 371 GGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLD-ESGHCKGFGFIQF 430
            G         R+LYVGNLH N++E  LRQ+F AFG VELVQ+PLD E+G CKGFGFIQF
Sbjct: 303 TG------PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 362

Query: 431 SRLEDARNA-LSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSR 490
            +LE ++ A ++LNG+LEIAGR IKVS+V+D  G QD    + D DD+DG GL+LNA SR
Sbjct: 363 VQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSR 422

Query: 491 ASLMQKLDRTGTASSIAGSLGTHVVNNTGATM-AMAPILGVGTIPSLGVATSLVSVPAFP 550
           A LMQKLDR+G A+SI GSLG   +N        M P      +P+        ++P+F 
Sbjct: 423 AMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPT-------TAIPSFV 482

Query: 551 GLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRFGKL 610
                             VG PSECLLLKNMFDP  E EP FD++IRDDV +ECS++G +
Sbjct: 483 N---------------EHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPV 524

Query: 611 KHIYVDKNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAK 659
            HIYVDKNSAGFVYLRF + EAA  AQRA++ RWFA KMI ATFM    YEAK
Sbjct: 543 NHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK 524

The following BLAST results are available for this feature:

BLAST of Csor.00g278260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	2.3e-61	37.99	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q14498	1.1e-60	37.59	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
Q8VH51	1.5e-60	37.59	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
O13845	6.7e-37	29.79	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q86U06	5.0e-32	35.88	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of Csor.00g278260 vs. NCBI nr


Match Name	Identity	Description
KAG6572123.1	100.00	RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953124.1	99.83	RNA-binding protein 39-like [Cucurbita moschata] >XP_022953126.1 RNA-binding pro...	[more]
XP_022969035.1	99.49	RNA-binding protein 39 [Cucurbita maxima] >XP_022969036.1 RNA-binding protein 39...	[more]
XP_008447936.1	89.08	PREDICTED: RNA-binding protein 39 isoform X1 [Cucumis melo] >XP_016900486.1 PRED...	[more]
XP_011658601.1	88.91	RNA-binding protein 39 isoform X1 [Cucumis sativus] >XP_031744308.1 RNA-binding ...	[more]

BLAST of Csor.00g278260 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1GM48	99.83	RNA-binding protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111455622 PE=4 S...	[more]
A0A6J1HYU3	99.49	RNA-binding protein 39 OS=Cucurbita maxima OX=3661 GN=LOC111468152 PE=4 SV=1	[more]
A0A1S3BIJ5	89.08	RNA-binding protein 39 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 S...	[more]
A0A0A0K4Q5	88.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014530 PE=4 SV=1	[more]
A0A1S3BJ70	88.91	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490271 PE=4 S...	[more]

BLAST of Csor.00g278260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16940.1	3.4e-169	62.00	Splicing factor, CC1-like	[more]
AT2G16940.3	3.1e-162	58.31	Splicing factor, CC1-like	[more]
AT2G16940.2	1.2e-161	57.72	Splicing factor, CC1-like	[more]
AT5G09880.1	7.9e-126	52.28	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 278..350 e-value: 1.6E-15 score: 67.6 coord: 381..453 e-value: 5.3E-23 score: 92.4 coord: 570..648 e-value: 3.2E-7 score: 40.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 593..644 e-value: 5.0E-6 score: 26.3 coord: 287..345 e-value: 6.8E-10 score: 38.6 coord: 382..450 e-value: 4.0E-18 score: 65.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 380..457 score: 18.700279
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 277..354 score: 14.487596
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 569..652 score: 9.456252
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 381..453 e-value: 1.5 score: 12.5 coord: 575..648 e-value: 0.015 score: 24.4
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 471..585 e-value: 2.0E-18 score: 67.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 565..663 e-value: 3.3E-30 score: 106.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 362..460 e-value: 2.8E-22 score: 81.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 270..361 e-value: 5.0E-21 score: 76.6
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 147..661 e-value: 1.1E-152 score: 507.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..34
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 77..659
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 77..659
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 568..651 e-value: 2.03682E-38 score: 134.98
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 278..350 e-value: 1.48518E-42 score: 145.827
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 380..649
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 270..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g278260.m01	Csor.00g278260.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding