Csor.00g277500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g277500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RADIALIS-like 3
Location	Csor_Chr19: 9055582 .. 9056705 (-)
RNA-Seq Expression	Csor.00g277500
Synteny	Csor.00g277500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGAGCTCTTTAAAACAACAACGTCCCGAGGCGACGTGGACGGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTTCGGCGGATCGAGTCCGGCCATGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTTAGTGAAGTTGTTCAAAGATTTTTTTCCTTCTTTATTTTAATTTTTGTCTTGTTTTCTTTTTTTTTATTTTTTATTACCAATTTTGGGTACATGTTTATGTGGTTAATATTGTGATTAGGTTAAGTTTTTTTATATGGTTGGTGGATATTTGTGAGACTTTGACTTATTAGAGTATTTTGTTGGTTGAATTTATTGTAATTTACTGGCTAGTTTGTGACCTATTGTCTAATCTAATTTTAAGTAGGTATTAATTGCCGTTTAATTAGATGAAACTAAAGAAAACCTTTAAACATAGGAAAAAAGAAGTTTTATTGGAGGATGAAAGTCCAAGCTCGACTAATTTAGGGAATGATCAGGGCTTAATTTGTTTGAGGGGAGGCATTGAATGATGAAAGTCCCACATCAGCTAATTTAGGAAATGATTATGTCATACTTTGTTCAAAAGAAGGTGTTGGATAATGATAGTCCCACATCGGTTTAAGGAATGATCATGAGTTTATAATCAAAGAATACTCTATCTGTAGGCATGAGGCCTTTTGGGGAAGCCCAAACCAAAGCCGTGACAGTTTATGCTCAAAGTGGACGCTTTAAAATTGTGAAACTGATGACGATACATAATGGGCCAAAGTGAATAATATCTAGTAACAATGGGCTTGGATATGATAACTTTGAAAGACTCAAAGATTCAAAAGTATTTTTTAAGCAAAATACTAATGTTTTCTATCCAAAACTAACGGCAATTCTTTTTTAAGCTTAAAAATCTTATTGAAACTTTGGAAAGTTTTAAGGATAATTGAAAATGTTTTGCTTTGCATTTGCTCTATTGGTAGGCTGCTGAAGTATCTTAAGCTGCAATGA

mRNA sequence

ATGGCTACGAGCTCTTTAAAACAACAACGTCCCGAGGCGACGTGGACGGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTTCGGCGGATCGAGTCCGGCCATGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGCTGCTGAAGTATCTTAAGCTGCAATGA

Coding sequence (CDS)

ATGGCTACGAGCTCTTTAAAACAACAACGTCCCGAGGCGACGTGGACGGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTTCGGCGGATCGAGTCCGGCCATGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGCTGCTGAAGTATCTTAAGCTGCAATGA

Protein sequence

MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ

Homology

[Close]

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-24
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+SS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGHVPIPNYRGVHNG-------DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+ V  G       D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-24
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+SS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGHVPIPNYR---GVHNG--DEELRLLKYLKLQ 97
           ++D+  IE+GHVP PNYR   G  NG   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA++S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHN-----GDEELRLLKYLKL 96
          +EDL  IE+G VP+PNY+   +      D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-23
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA++S+      A+WT K+NKLFE+ALA YD++TP+RWHN+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHN 83
          + D+  IESG  P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-21
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+ S+       +WT KQNK FE+ALA+YD++TP+RWHN+A AVGGK+ +E KR Y++L
Sbjct: 1   MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61  LEDLRRIESGHVPIPNYRGVHNG-------DEELRLLKYLKLQ 97
           + D+  IE+GHVP P+Y+            DEE R ++ +KLQ
Sbjct: 61  VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of Csor.00g277500 vs. NCBI nr
Match: KAG6572047.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (498), Expect = 3.60e-63
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190 bits (482), Expect = 9.95e-61
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDLRRIESG VPIPNYRG HNGDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. NCBI nr
Match: XP_022952671.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 189 bits (479), Expect = 2.86e-60
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDL RIESG VPIPNYRGVHNGDEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 186 bits (472), Expect = 3.34e-59
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDL+RIESG VPIPNYRG HNGDEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 178 bits (452), Expect = 3.76e-56
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPE TWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKS DEVKRHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDLRRIESG VPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.38e-60
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDL RIESG VPIPNYRGVHNGDEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 1.62e-59
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDL+RIESG VPIPNYRG HNGDEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 2.91e-53
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDLR+IESG VPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 1.19e-52
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96
          LEDLRRIESG VPIPNYR   N DEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 5.47e-52
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLRRIESGHVPIPNYRG----VHNGDEELRLLKYLKLQ 96
           LEDLRRIESG VPIPNYR       N DEELRLLKYLKL+
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of Csor.00g277500 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+SS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGHVPIPNYRGVHNG-------DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+ V  G       D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Csor.00g277500 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-25
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+SS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGHVPIPNYR---GVHNG--DEELRLLKYLKLQ 97
           ++D+  IE+GHVP PNYR   G  NG   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Csor.00g277500 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA++S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGHVPIPNYRGVHN-----GDEELRLLKYLKL 96
          +EDL  IE+G VP+PNY+   +      D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Csor.00g277500 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA++S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGHVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Csor.00g277500 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
           MA+ S+       +WT KQNK FE+ALA+YD++TP+RWHN+A AVGGK+ +E KR Y++L
Sbjct: 1   MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61  LEDLRRIESGHVPIPNYRGVHNG-------DEELRLLKYLKLQ 97
           + D+  IE+GHVP P+Y+            DEE R ++ +KLQ
Sbjct: 61  VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

The following BLAST results are available for this feature:

BLAST of Csor.00g277500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	2.7e-24	53.40	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	3.6e-24	53.47	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	1.8e-23	53.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	8.8e-23	59.76	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q9SIJ5	6.3e-21	47.57	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]

BLAST of Csor.00g277500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572047.1	3.60e-63	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554816.1	9.95e-61	96.88	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022952671.1	2.86e-60	96.88	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_022975322.1	3.34e-59	94.79	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_038888995.1	3.76e-56	91.67	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g277500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKW1	1.38e-60	96.88	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1ICR6	1.62e-59	94.79	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A1S3BHB0	2.91e-53	87.50	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A0A0K2A2	1.19e-52	87.50	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A6J1C2H2	5.47e-52	86.00	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]

BLAST of Csor.00g277500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	1.9e-25	53.40	RAD-like 5	[more]
AT4G39250.1	2.5e-25	53.47	RAD-like 1	[more]
AT1G75250.2	1.3e-24	53.00	RAD-like 6	[more]
AT1G75250.1	8.2e-24	61.54	RAD-like 6	[more]
AT2G21650.1	4.5e-22	47.57	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 3.3E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.365003
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 3.87241E-6 score: 38.3254
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 1.5E-22 score: 81.1
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g277500.m01	Csor.00g277500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding