Csor.00g276710 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g276710
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Glutamate-gated kainate-type ion channel receptor subunit GluR5
Location	Csor_Chr01: 8713078 .. 8713521 (-)
RNA-Seq Expression	Csor.00g276710
Synteny	Csor.00g276710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTTCCATTCCTTCTCAAAACCCTCCTCCTTCCTTCCACTCTTACAACACCAATATCATGTTTCTTTCTTTCCGCCCTCGATTCATTTTCATCCTTCTTCTCGTTCTTGCCCTCGCCTCCATGTCGTCGGAGGCGGCCAGGGTGCCTACAAAGTATTGGGAGCAGATGTTGCCAAAGAAGCTACCCACACCGTCCTCTGCGCCGTCCAAAGGGACGAATTCTGTGGCTTCTTCGAGTTTTAAAACTGTGAAGGTTGATGGGAACCTTCCCGCCAAAGGTGGAAAGGTTTAGGTTTGAGATGGTATAGAAAGTTGAAAAGTTATTCAATAGGACTGTTACAATGTGATAGTAAAAGATGGAGGATTTCGAGGAGGAGGCGGTGACGTGGCCGACTATGACGGTAGAGCTCTTGGTTTGAGTGGCTTGAGCTGTCCATGA

mRNA sequence

ATGTCTCCTTCCATTCCTTCTCAAAACCCTCCTCCTTCCTTCCACTCTTACAACACCAATATCATGTTTCTTTCTTTCCGCCCTCGATTCATTTTCATCCTTCTTCTCGTTCTTGCCCTCGCCTCCATGTCGTCGGAGGCGGCCAGGGTGCCTACAAAGTATTGGGAGCAGATGTTGCCAAAGAAGCTACCCACACCGTCCTCTGCGCCGTCCAAAGGGACGAATTCTGTGGCTTCTTCGAGTTTTAAAACTGTGAAGGTTGATGGGAACCTTCCCGCCAAAGTAAAAGATGGAGGATTTCGAGGAGGAGGCGGTGACGTGGCCGACTATGACGGTAGAGCTCTTGGTTTGAGTGGCTTGAGCTGTCCATGA

Coding sequence (CDS)

ATGTCTCCTTCCATTCCTTCTCAAAACCCTCCTCCTTCCTTCCACTCTTACAACACCAATATCATGTTTCTTTCTTTCCGCCCTCGATTCATTTTCATCCTTCTTCTCGTTCTTGCCCTCGCCTCCATGTCGTCGGAGGCGGCCAGGGTGCCTACAAAGTATTGGGAGCAGATGTTGCCAAAGAAGCTACCCACACCGTCCTCTGCGCCGTCCAAAGGGACGAATTCTGTGGCTTCTTCGAGTTTTAAAACTGTGAAGGTTGATGGGAACCTTCCCGCCAAAGTAAAAGATGGAGGATTTCGAGGAGGAGGCGGTGACGTGGCCGACTATGACGGTAGAGCTCTTGGTTTGAGTGGCTTGAGCTGTCCATGA

Protein sequence

MSPSIPSQNPPPSFHSYNTNIMFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPAKVKDGGFRGGGGDVADYDGRALGLSGLSCP

Homology

[Close]

BLAST of Csor.00g276710 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (607), Expect = 6.17e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSPSIPSQNPPPSFHSYNTNIMFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLP 60
           MSPSIPSQNPPPSFHSYNTNIMFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLP
Sbjct: 1   MSPSIPSQNPPPSFHSYNTNIMFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLP 60

Query: 61  KKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPAKVKDGGFRGGGGDVADYDGRALGLSGL 120
           KKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPAKVKDGGFRGGGGDVADYDGRALGLSGL
Sbjct: 61  KKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPAKVKDGGFRGGGGDVADYDGRALGLSGL 120

Query: 121 SCP 123
           SCP
Sbjct: 121 SCP 123

[Close]

BLAST of Csor.00g276710 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 102 bits (254), Expect = 9.17e-26
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81
          M LSF  RFI  L LVLAL S+S++AARVPT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 82 FKTVKVDGNLPAK 94
           K +KV+GNLPAK
Sbjct: 61 SKPMKVNGNLPAK 73

[Close]

BLAST of Csor.00g276710 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.30e-25
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81
          M L+F  RFI  L L+LAL S+SS+AARVPT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 82 FKTVKVDGNLPAK 94
           K +KV+GNLPAK
Sbjct: 61 SKPMKVNGNLPAK 73

[Close]

BLAST of Csor.00g276710 vs. NCBI nr
Match: KAG6624344.1 (hypothetical protein CIPAW_16G019900 [Carya illinoinensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.02e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 45 SEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPA 93
          SEA+R+P +YWEQMLPKKLP+PSS+PSKGTNS  SSS  T K DG+LP+
Sbjct: 22 SEASRLPKEYWEQMLPKKLPSPSSSPSKGTNSQTSSSSTTSKADGDLPS 70

[Close]

BLAST of Csor.00g276710 vs. NCBI nr
Match: KAF4402307.1 (hypothetical protein G4B88_003228 [Cannabis sativa])

HSP 1 Score: 74.7 bits (182), Expect = 1.90e-14
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 25  SFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKT 84
           S+R ++  I +L++A   +S EA+R+P +Y++QM+PKKLP+PSS+PSKGTNSV +SS K 
Sbjct: 40  SWRQKYCLIFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKA 99

Query: 85  VKVDGNLPA 93
           VK D NLP+
Sbjct: 100 VKADANLPS 107

[Close]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 6.30e-26
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81
          M L+F  RFI  L L+LAL S+SS+AARVPT YWEQMLPKKLP+PSSAPSKGTN+VA SS
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 82 FKTVKVDGNLPAK 94
           K +KV+GNLPAK
Sbjct: 61 SKPMKVNGNLPAK 73

[Close]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL
Match: A0A7J6I408 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.18e-15
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 25  SFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKT 84
           S+R ++  I +L++A   +S EA+R+P +Y++QM+PKKLP+PSS+PSKGTNSV +SS K 
Sbjct: 40  SWRQKYCLIFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKA 99

Query: 85  VKVDGNLPA 93
           VK D NLP+
Sbjct: 100 VKADANLPS 107

[Close]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL
Match: A0A6N2LUB4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS276075 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.00e-14
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81
          M +S+R +F+  L  +LA   ++S+A+R+P  YWEQMLPKKLPTPSS+PSKGTNSV+ S 
Sbjct: 1  MMVSWRQKFL--LFTLLAFIVLASDASRLPGAYWEQMLPKKLPTPSSSPSKGTNSVSRSY 60

Query: 82 FKTVKVDGNL 91
            T+K D +L
Sbjct: 61 STTIKSDSDL 68

[Close]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL
Match: A0A2P5W5E0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.83e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 33 ILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKTVKVDGNLP 92
          +L+L L    + SEA+R P  YWEQMLPKKLPTPSS+PSKGTNSV  S+ K VK D +LP
Sbjct: 10 LLILFLLAFILLSEASRSPKVYWEQMLPKKLPTPSSSPSKGTNSVTMSTSKAVKPDRSLP 69

[Close]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.67e-14
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 25  SFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKT 84
           S+R ++    +L++A   +S EA+R+P +Y++QM+PKKLP+PSS+PSKGTNSV +SS K 
Sbjct: 40  SWRQKYCLFFILLIAFIDLS-EASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKA 99

Query: 85  VKVDGNLPA 93
           VK D NLP+
Sbjct: 100 VKADANLPS 107

The following BLAST results are available for this feature:

BLAST of Csor.00g276710 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g276710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607702.1	6.17e-79	100.00	hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646070.1	9.17e-26	75.34	hypothetical protein Csa_015561 [Cucumis sativus]	[more]
TYK23265.1	1.30e-25	73.97	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va...	[more]
KAG6624344.1	1.02e-14	71.43	hypothetical protein CIPAW_16G019900 [Carya illinoinensis]	[more]
KAF4402307.1	1.90e-14	55.07	hypothetical protein G4B88_003228 [Cannabis sativa]	[more]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI56	6.30e-26	73.97	Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ...	[more]
A0A7J6I408	9.18e-15	55.07	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1	[more]
A0A6N2LUB4	2.00e-14	55.71	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS276075 PE=4 SV=...	[more]
A0A2P5W5E0	2.83e-14	62.30	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV...	[more]
A0A803PR73	3.67e-14	53.62	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Csor.00g276710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g276710.m01	Csor.00g276710.m01	mRNA