Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCTGAGAACAAGCCGCACTGGCGATTTGCCGCTTGTGGAATCGCGGACGGAGTTGCGCAAATGGCTGATTTTTCAGAGGGTGTGCTACCACCTTTAGTACGACTTGCGAGTCGGGAAGCACTCTTTGTAAAGAAAAGTCTTGCAATTTCCCTCCAAAGACTATCAACATCAGTTCGGAAACTGCACGTGAAAAAGCGTTGGCATGGAGGAGCTCAGCCACGATCGATATCTGCCGGAACCAGGCCAACCCAGTGTTGCAGTCGAAGGCAACGTGGCACTTTGAAGAACAATGTCAGCTATTCCAGAGGTAGGCAATCTCTAGCAATGAAGGAATCCATTCCAGTAATGCATCGATCTCCCGGGGTTAGCGGAATAATCTCTCAGAGTCGAAGGAGCACGCAGCGAATGCTTGCAAAACGCACTCAGGCAATGAAAAGTACGAATGTCGTTGTGATTTTCGAAGTTGGCATACAAAGGCCTATTAGTTTACTCAACCACACACGAACAAGATCGCCATAGGGACACTGCGAAAGAATCTCTTAAGCATGGTTCCCGAACGAGATTCTAACATCTCTCGGCGTCATTCCATGTCTAATGCGTGTCCTTTGAAAGCAGGATCATTAGGTGCTCAGACGCAGCAGCACAGCAATCTGCGTGGTTGCAGCTCACCAGAGATGAAAAAAGACACCGGGGAAGCGCGGTTCGTTCCTCCGCTAACAAGATGCTCGAGTGAAGGCGAACAGCGTCGAGAAGTGGACAGCACAAGCCATTGCGAGCTTAATGATGCTGTTCAAAAAAGCAATTGA
mRNA sequence
ATGCATTCTGAGAACAAGCCGCACTGGCGATTTGCCGCTTGTGGAATCGCGGACGGAGTTGCGCAAATGGCTGATTTTTCAGAGGGTGTGCTACCACCTTTAGTACGACTTGCGAGTCGGGAAGCACTCTTTGTAAAGAAAAGTCTTGCAATTTCCCTCCAAAGACTATCAACATCAGTTCGGAAACTGCACGTGAAAAAGCGTTGGCATGGAGGAGCTCAGCCACGATCGATATCTGCCGGAACCAGGCCAACCCAGTGTTGCAGTCGAAGGCAACGTGGCACTTTGAAGAACAATGTCAGCTATTCCAGAGGTAGGCAATCTCTAGCAATGAAGGAATCCATTCCAGTAATGCATCGATCTCCCGGGGTTAGCGGAATAATCTCTCAGAGTCGAAGGAGCACGCAGCGAATGCTTGCAAAACGCACTCAGGCAATGAAAAGATCATTAGGTGCTCAGACGCAGCAGCACAGCAATCTGCGTGGTTGCAGCTCACCAGAGATGAAAAAAGACACCGGGGAAGCGCGGTTCGTTCCTCCGCTAACAAGATGCTCGAGTGAAGGCGAACAGCGTCGAGAAGTGGACAGCACAAGCCATTGCGAGCTTAATGATGCTGTTCAAAAAAGCAATTGA
Coding sequence (CDS)
ATGCATTCTGAGAACAAGCCGCACTGGCGATTTGCCGCTTGTGGAATCGCGGACGGAGTTGCGCAAATGGCTGATTTTTCAGAGGGTGTGCTACCACCTTTAGTACGACTTGCGAGTCGGGAAGCACTCTTTGTAAAGAAAAGTCTTGCAATTTCCCTCCAAAGACTATCAACATCAGTTCGGAAACTGCACGTGAAAAAGCGTTGGCATGGAGGAGCTCAGCCACGATCGATATCTGCCGGAACCAGGCCAACCCAGTGTTGCAGTCGAAGGCAACGTGGCACTTTGAAGAACAATGTCAGCTATTCCAGAGGTAGGCAATCTCTAGCAATGAAGGAATCCATTCCAGTAATGCATCGATCTCCCGGGGTTAGCGGAATAATCTCTCAGAGTCGAAGGAGCACGCAGCGAATGCTTGCAAAACGCACTCAGGCAATGAAAAGATCATTAGGTGCTCAGACGCAGCAGCACAGCAATCTGCGTGGTTGCAGCTCACCAGAGATGAAAAAAGACACCGGGGAAGCGCGGTTCGTTCCTCCGCTAACAAGATGCTCGAGTGAAGGCGAACAGCGTCGAGAAGTGGACAGCACAAGCCATTGCGAGCTTAATGATGCTGTTCAAAAAAGCAATTGA
Protein sequence
MHSENKPHWRFAACGIADGVAQMADFSEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQPRSISAGTRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAKRTQAMKRSLGAQTQQHSNLRGCSSPEMKKDTGEARFVPPLTRCSSEGEQRREVDSTSHCELNDAVQKSN
Homology
BLAST of Csor.00g274090 vs. NCBI nr
Match:
KAG6597167.1 (hypothetical protein SDJN03_10347, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 412 bits (1058), Expect = 7.41e-145
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query: 1 MHSENKPHWRFAACGIADGVAQMADFSEGVLPPLVRLASREALFVKKSLAISLQRLSTSV 60
MHSENKPHWRFAACGIADGVAQMADFSEGVLPPLVRLASREALFVKKSLAISLQRLSTSV
Sbjct: 1 MHSENKPHWRFAACGIADGVAQMADFSEGVLPPLVRLASREALFVKKSLAISLQRLSTSV 60
Query: 61 RKLHVKKRWHGGAQPRSISAGTRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHR 120
RKLHVKKRWHGGAQPRSISAGTRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHR
Sbjct: 61 RKLHVKKRWHGGAQPRSISAGTRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHR 120
Query: 121 SPGVSGIISQSRRSTQRMLAKRTQAMKRSLGAQTQQHSNLRGCSSPEMKKDTGEARFVPP 180
SPGVSGIISQSRRSTQRMLAKRTQAMKRSLGAQTQQHSNLRGCSSPEMKKDTGEARFVPP
Sbjct: 121 SPGVSGIISQSRRSTQRMLAKRTQAMKRSLGAQTQQHSNLRGCSSPEMKKDTGEARFVPP 180
Query: 181 LTRCSSEGEQRREVDSTSHCELNDAVQKSN 210
LTRCSSEGEQRREVDSTSHCELNDAVQKSN
Sbjct: 181 LTRCSSEGEQRREVDSTSHCELNDAVQKSN 210
BLAST of Csor.00g274090 vs. NCBI nr
Match:
XP_023538775.1 (vacuolar protein 8-like [Cucurbita pepo subsp. pepo] >XP_023538776.1 vacuolar protein 8-like [Cucurbita pepo subsp. pepo] >XP_023538777.1 vacuolar protein 8-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 62.8 bits (151), Expect = 1.66e-07
Identity = 80/252 (31.75%), Postives = 100/252 (39.68%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP +RL + F K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFIRLVESGSTFCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAATC------TLKNMSAIPEVRQSLADEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGSEKLRMSVISEGGIQSLLVYINHTRTQESAILTLRNLLSMVPTEILTSLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGC---SSPEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTS 210
SLGAQ S + C SSPEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKAGSLGAQQAAASAI--CVVSSSPEMKKTLGEAGFVPPLIKMLEAKSNSVREVAAQA 474
BLAST of Csor.00g274090 vs. NCBI nr
Match:
KAG6597172.1 (Peroxisomal membrane protein 11D, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 60.8 bits (146), Expect = 8.20e-07
Identity = 80/252 (31.75%), Postives = 99/252 (39.29%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP VRL + K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFVRLVESGSTLCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAATC------TLKNMSAIPEVRQSLANEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGNEKLRMSVISEGGIQSLLVYINHTRTQESAIGTLRNLLSMVPTEILTSLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGC---SSPEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTS 210
SLGAQ S + C SSPEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKAGSLGAQQAAASAI--CVVSSSPEMKKTLGEAGFVPPLIKMLEAKSNSVREVAAQA 474
BLAST of Csor.00g274090 vs. NCBI nr
Match:
KAG7028637.1 (VAC8, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 60.5 bits (145), Expect = 1.02e-06
Identity = 79/252 (31.35%), Postives = 99/252 (39.29%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP +RL + K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFIRLVESGSTLCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAATC------TLKNMSAIPEVRQSLADEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGNEKLRMSVISEGGIQSLLVYINHTRTQESAIGTLRNLLSIVPTEILTSLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGC---SSPEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTS 210
SLGAQ S + C SSPEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKAGSLGAQQAAASAI--CVVSSSPEMKKTLGEAGFVPPLIKMLEAKSNSVREVAAQA 474
BLAST of Csor.00g274090 vs. NCBI nr
Match:
XP_022974083.1 (vacuolar protein 8-like [Cucurbita maxima] >XP_022974085.1 vacuolar protein 8-like [Cucurbita maxima] >XP_022974086.1 vacuolar protein 8-like [Cucurbita maxima])
HSP 1 Score: 59.7 bits (143), Expect = 1.86e-06
Identity = 79/252 (31.35%), Postives = 99/252 (39.29%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP +RL + K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFIRLVESGSTLCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAASC------TLKNMSAIPEVRQSLADEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGSEKLRMSVISEGGIQSLLVYINHTRTQESAIGTLRNLLNLVPTEILTFLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGC---SSPEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTS 210
SLGAQ S + C SSPEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKEGSLGAQQAAASAI--CVVSSSPEMKKILGEAGFVPPLIKMLEAKSNSVREVAAQA 474
BLAST of Csor.00g274090 vs. ExPASy TrEMBL
Match:
A0A6J1IF61 (vacuolar protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111472700 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 9.00e-07
Identity = 79/252 (31.35%), Postives = 99/252 (39.29%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP +RL + K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFIRLVESGSTLCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAASC------TLKNMSAIPEVRQSLADEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGSEKLRMSVISEGGIQSLLVYINHTRTQESAIGTLRNLLNLVPTEILTFLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGC---SSPEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTS 210
SLGAQ S + C SSPEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKEGSLGAQQAAASAI--CVVSSSPEMKKILGEAGFVPPLIKMLEAKSNSVREVAAQA 474
BLAST of Csor.00g274090 vs. ExPASy TrEMBL
Match:
A0A6J1GFU9 (vacuolar protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111453798 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.22e-06
Identity = 78/250 (31.20%), Postives = 98/250 (39.20%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPP +RL + K+ AISLQRLSTSV + HGGAQP R+ +
Sbjct: 235 SEGVLPPFIRLVESGSTLCKEKAAISLQRLSTSVETAR-EIVGHGGAQPLIDICRTSNPV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSRRSTQRMLAK 146
+ C TLKN + RQSLA + IPVM G SGI+S+S+ L
Sbjct: 295 LQSAATC------TLKNMSAIPEVRQSLADEGIIPVMIDLLG-SGILSESKEHAAECLQN 354
Query: 147 RTQAMKR----------------------------------------------------- 206
T ++
Sbjct: 355 LTTGNEKLRMSVISEGGIQSLLVYINHTRTQESAIGTLRNLLSMVPTEILTSLGVLPCLL 414
Query: 207 ------SLGAQTQQHSNLRGCSS-PEMKKDTGEARFVPPLTRC-SSEGEQRREVDSTSHC 210
SLGAQ S + SS PEMKK GEA FVPPL + ++ REV + +
Sbjct: 415 RVLKAGSLGAQQAAASAICVVSSLPEMKKTLGEAGFVPPLIKMLEAKSNSVREVAAQAIA 474
BLAST of Csor.00g274090 vs. ExPASy TrEMBL
Match:
A0A6J1IYS5 (vacuolar protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111479683 PE=3 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 8.15e-05
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 0
Query: 12 AACGIADGVAQMAD---FSEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKR 71
A C I + +Q D SEGVLPPL+RL + K+ A+SLQRLSTS +
Sbjct: 219 AICSIVE--SQSYDNWLISEGVLPPLIRLVESGSALCKEKAAMSLQRLSTSAETAR-EIV 278
Query: 72 WHGGAQP-----RSISAGTRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPG 131
HGGAQP ++ ++ + C TLKN + RQSLA + +P+M G
Sbjct: 279 GHGGAQPLLEICQTSNSVLQAAAAC------TLKNMSTIPEVRQSLAEEGIVPIMINLLG 337
BLAST of Csor.00g274090 vs. ExPASy TrEMBL
Match:
A0A6J1EF73 (vacuolar protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111431972 PE=3 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 1.10e-04
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPPL+RL + K+ A+SLQRLSTS + HGGAQP ++ ++
Sbjct: 235 SEGVLPPLIRLVESGSALCKEKAAMSLQRLSTSAETAR-EIVGHGGAQPLLEICQTSNSV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSR 132
+ C TLKN + RQSLA + +P+M G +GI+ +S+
Sbjct: 295 LQAAAAC------TLKNMSTIPEVRQSLAEEGIVPIMINLLG-NGILLESK 337
BLAST of Csor.00g274090 vs. ExPASy TrEMBL
Match:
A0A1S3AVN3 (vacuolar protein 8-like OS=Cucumis melo OX=3656 GN=LOC103483309 PE=3 SV=1)
HSP 1 Score: 52.0 bits (123), Expect = 3.64e-04
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = 0
Query: 27 SEGVLPPLVRLASREALFVKKSLAISLQRLSTSVRKLHVKKRWHGGAQP-----RSISAG 86
SEGVLPPL+RL + K+ AISLQ LS S + HGGAQP R+ ++
Sbjct: 235 SEGVLPPLIRLVESGSALCKEKAAISLQMLSISAETAR-EIVGHGGAQPLLDICRTSNSV 294
Query: 87 TRPTQCCSRRQRGTLKNNVSYSRGRQSLAMKESIPVMHRSPGVSGIISQSR 132
+ C TLKN + RQSLA + IPVM G GI+ +S+
Sbjct: 295 VQAAAAC------TLKNMSTIPEVRQSLAEEGIIPVMINLLGC-GILLESK 337
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6597167.1 | 7.41e-145 | 100.00 | hypothetical protein SDJN03_10347, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023538775.1 | 1.66e-07 | 31.75 | vacuolar protein 8-like [Cucurbita pepo subsp. pepo] >XP_023538776.1 vacuolar pr... | [more] |
| KAG6597172.1 | 8.20e-07 | 31.75 | Peroxisomal membrane protein 11D, partial [Cucurbita argyrosperma subsp. sororia... | [more] |
| KAG7028637.1 | 1.02e-06 | 31.35 | VAC8, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| XP_022974083.1 | 1.86e-06 | 31.35 | vacuolar protein 8-like [Cucurbita maxima] >XP_022974085.1 vacuolar protein 8-li... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1IF61 | 9.00e-07 | 31.35 | vacuolar protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111472700 PE=4 SV=1 | [more] |
| A0A6J1GFU9 | 1.22e-06 | 31.20 | vacuolar protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111453798 PE=4 SV=1 | [more] |
| A0A6J1IYS5 | 8.15e-05 | 36.43 | vacuolar protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111479683 PE=3 SV=1 | [more] |
| A0A6J1EF73 | 1.10e-04 | 37.84 | vacuolar protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111431972 PE=3 SV=1 | [more] |
| A0A1S3AVN3 | 3.64e-04 | 39.64 | vacuolar protein 8-like OS=Cucumis melo OX=3656 GN=LOC103483309 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
