Csor.00g273960 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g273960
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LIM domain-containing protein PLIM2c-like
Location	Csor_Chr06: 8337361 .. 8339219 (-)
RNA-Seq Expression	Csor.00g273960
Synteny	Csor.00g273960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGCACCCTTTCGGTACGTCGAGAGTTAACGAGTCGTTTTCTTTCGTTGTTATCATTACGTTTGTTCTGATGCTAAATTGTCGAGTTGTTTCATGATAGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTGTAACGTCTTTTTTTTCTTTTCCATCTCTTATTGTTCGTCCCTTGTTTTTACCTATTGGTCTAACATTCTCTCGTTTTTGTTATGGCAACAGCAAAGCCTCCTGAGAAACAAAATGATCCGGTATGCTCTCGTTTTTAGTCTCGAATATATTAGAATTCTAGTTCTCGTTTGATAATGATTTTGTATGGATCGTTTACTAGTTCTCGTTTGATAACGATTTTGTATGGATCGTTTACTTCTGTTAGTTTTTACTGTTGTCTTGCTAATCGTTTCCTTTTGTTAGTTTTTACTGTTGTCTTGCTAATCGTTTCCTTTTGTTAGTTTTTACTGTGTCTTGGTAATCGGCCAAAATTCTCTCTCTCGGGATTCAGTCTCAACTGAAGCTTACATTCTCGGGACTCAACTCCCACCTCGAGTTTACATTCTCGGACTCAACTCCCACCTCGAGTTTTTCCATTTTGTTAGTTTTTACTGTGTCTTAGTAATTGTTCCATTTGGTTAGTTTTTACTGTGTCTTAGTAATTGTTCCATTTGGTTAGTTTTTACTGTCTTAGTAATTGTTCCATTTGGTTAGTTTTTAATGTGTCTTAGTAATTGTTCCATTTGGTTAGTTTTTACTGTGTCTTGGTAAGGTAATTGTTCCATTCAGTTAACTTTTAACTTTGTTTTGGTAAGGTAATTGTTCCATTCTGTTAACTTATACGGTTAACTTTTACTCTATGTTGGTAAGGTAATTGTTCCATTCGGTTAACTTTTACTATGTGTTGGTAAGGTAATTGTTCCATTCGGTTAACTTTTACTATGTGTTGGTAAGGTAATTGTTCCATTCGGTTAACTTTTACTATGTGTTGGTAAGGTAATTGTTCCATTCGGTTAACTTTTACTATGTGTTGGTAAGGTAATTGTTCCATTCGGTTAACTTTTACTATGTGTTGGTAAGGTAATTGTTCCATTCGGTTAACGTTTACTCTGTCTTGGTAAGGTAATTGTTCCATTCTGGTAACTTTTGCTGTGTCTTGGTAACTTGATTTTGTATGGATCAATCCATTCTATTTTACGTGTCTTGGTAACTTTTGACCTGTTTACCAGTCGAGGGCTCCAACGAAAGCTTCGGCCATGTTCTCAGGAACTCAGGACAAATGTGCAGCCTGCTCAAAGACGGTTTATCCATTGGAGAAGGTCGGTCAATAATTCTTCGTGTTTTTCAATCACAAAACATAGCATAGATCGATTAACACTGGCTAATCGAAACTATAATTTGGTTGATAAATAAAAGGTGACTCTTGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCGTCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCACTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCCGAGGCCGCCGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGAAGCGGCCTGA

mRNA sequence

ATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCAAAGCCTCCTGAGAAACAAAATGATCCGTCGAGGGCTCCAACGAAAGCTTCGGCCATGTTCTCAGGAACTCAGGACAAATGTGCAGCCTGCTCAAAGACGGTTTATCCATTGGAGAAGGTGACTCTTGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCGTCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCACTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCCGAGGCCGCCGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGAAGCGGCCTGA

Coding sequence (CDS)

ATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCAAAGCCTCCTGAGAAACAAAATGATCCGTCGAGGGCTCCAACGAAAGCTTCGGCCATGTTCTCAGGAACTCAGGACAAATGTGCAGCCTGCTCAAAGACGGTTTATCCATTGGAGAAGGTGACTCTTGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCGTCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCACTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCCGAGGCCGCCGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGAAGCGGCCTGA

Protein sequence

MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEEEAA

Homology

[Close]

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.6e-82
Identity = 144/200 (72.00%), Postives = 165/200 (82.50%), Query Frame = 0


Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEAAEDDEGGAQPQAEE 202
           T   +  E  E  A P  EE
Sbjct: 183 TAEEDKTEPKEDEANPTEEE 202

[Close]

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.5e-80
Identity = 139/193 (72.02%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F GTQDKCAAC KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGK--TEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEAAED 191
               T PPE  ED
Sbjct: 181 ASGNTLPPEPTED 191

[Close]

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.6e-77
Identity = 139/210 (66.19%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEAAEDDEGGAQPQAEEEAA 205
                  +PP +  + D+  + P+A+E+ A
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDA 210

[Close]

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.4e-70
Identity = 121/191 (63.35%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 180
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKATTPPPEAA 189
           K+AT     AA
Sbjct: 181 KRATAAATAAA 191

[Close]

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-69
Identity = 129/203 (63.55%), Postives = 152/203 (74.88%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT DKC ACDKTV+ ++LL+ +G PYHK+CFKCSHCKG LSM SYS MDGVLYCKT
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLEK 120
           HFEQLFKE+G+FSK F    P  +  D   +RAP+K  + FSGTQDKCAAC KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKF---APGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVL------ 180
           +TLEGE YHK+CF+C+HGGC LT SSYAAL+GVLYCK HF QLFM KG+YNH+       
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 ----EAAANKKATTPPPEAAEDD 192
               E    ++   PPP+   +D
Sbjct: 181 EVLPEVVPEEQPAPPPPDENRED 200

[Close]

BLAST of Csor.00g273960 vs. NCBI nr
Match: KAG6597154.1 (LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424 bits (1090), Expect = 6.16e-150
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204
           TTPPPEAAEDDEGGAQPQAEEEAA
Sbjct: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204

[Close]

BLAST of Csor.00g273960 vs. NCBI nr
Match: XP_022934048.1 (LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 LIM domain-containing protein PLIM2c-like [Cucurbita pepo subsp. pepo] >KAG7028624.1 LIM domain-containing protein PLIM2c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423 bits (1087), Expect = 1.77e-149
Identity = 203/204 (99.51%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204
           TTPPPEAAEDDEGGAQPQAEE+AA
Sbjct: 181 TTPPPEAAEDDEGGAQPQAEEDAA 204

[Close]

BLAST of Csor.00g273960 vs. NCBI nr
Match: XP_022975113.1 (LIM domain-containing protein PLIM2c-like [Cucurbita maxima])

HSP 1 Score: 417 bits (1071), Expect = 4.87e-147
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQTSKP EKQND SRAPTKASAMFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDSSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204
           TTPPPEAAEDDEGGAQPQAEE+AA
Sbjct: 181 TTPPPEAAEDDEGGAQPQAEEDAA 204

[Close]

BLAST of Csor.00g273960 vs. NCBI nr
Match: XP_008438078.1 (PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo])

HSP 1 Score: 391 bits (1004), Expect = 9.25e-137
Identity = 188/203 (92.61%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 201
           TTPPPE AE++EG   AQPQA+E
Sbjct: 181 TTPPPEPAEEEEGATEAQPQADE 203

[Close]

BLAST of Csor.00g273960 vs. NCBI nr
Match: XP_011650764.2 (LIM domain-containing protein PLIM2b isoform X2 [Cucumis sativus])

HSP 1 Score: 390 bits (1001), Expect = 2.75e-136
Identity = 188/203 (92.61%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 201
            TPPPE AE++EG   AQPQA+E
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE 203

[Close]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL
Match: A0A6J1F6K2 (LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC111441332 PE=4 SV=1)

HSP 1 Score: 423 bits (1087), Expect = 8.56e-150
Identity = 203/204 (99.51%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204
           TTPPPEAAEDDEGGAQPQAEE+AA
Sbjct: 181 TTPPPEAAEDDEGGAQPQAEEDAA 204

[Close]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL
Match: A0A6J1IIB7 (LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC111474084 PE=4 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 2.36e-147
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQTSKP EKQND SRAPTKASAMFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDSSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEEAA 204
           TTPPPEAAEDDEGGAQPQAEE+AA
Sbjct: 181 TTPPPEAAEDDEGGAQPQAEEDAA 204

[Close]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL
Match: A0A1S3AW36 (LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC103483293 PE=4 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 4.48e-137
Identity = 188/203 (92.61%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 201
           TTPPPE AE++EG   AQPQA+E
Sbjct: 181 TTPPPEPAEEEEGATEAQPQADE 203

[Close]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL
Match: A0A0A0L4A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 1.09e-135
Identity = 187/203 (92.12%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 201
            TPPPE AE++EG   AQPQA+E
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE 203

[Close]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL
Match: A0A6J1E9B9 (LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC111431888 PE=4 SV=1)

HSP 1 Score: 383 bits (984), Expect = 5.20e-134
Identity = 187/204 (91.67%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQND-PSRAPTKASAMFSGTQDKCAACSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQTSKP EKQND  SRAP+K S+MFSGTQDKC+ACSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDMQSRAPSKLSSMFSGTQDKCSACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGC+LTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEAAEDDE--GGAQPQAEE 201
           ATTPPPE+AE+DE  G A+ Q+EE
Sbjct: 181 ATTPPPESAEEDEAKGNAEAQSEE 204

[Close]

BLAST of Csor.00g273960 vs. TAIR 10
Match: AT3G61230.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-83
Identity = 144/200 (72.00%), Postives = 165/200 (82.50%), Query Frame = 0


Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEAAEDDEGGAQPQAEE 202
           T   +  E  E  A P  EE
Sbjct: 183 TAEEDKTEPKEDEANPTEEE 202

[Close]

BLAST of Csor.00g273960 vs. TAIR 10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-81
Identity = 139/193 (72.02%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F GTQDKCAAC KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGK--TEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEAAED 191
               T PPE  ED
Sbjct: 181 ASGNTLPPEPTED 191

[Close]

BLAST of Csor.00g273960 vs. TAIR 10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-78
Identity = 139/210 (66.19%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEAAEDDEGGAQPQAEEEAA 205
                  +PP +  + D+  + P+A+E+ A
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDA 210

[Close]

BLAST of Csor.00g273960 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.8e-71
Identity = 121/191 (63.35%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 180
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKATTPPPEAA 189
           K+AT     AA
Sbjct: 181 KRATAAATAAA 191

[Close]

BLAST of Csor.00g273960 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-69
Identity = 116/182 (63.74%), Postives = 150/182 (82.42%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+      ++ P  +R P++ +  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANK 180
           VT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

The following BLAST results are available for this feature:

BLAST of Csor.00g273960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q500W4	1.6e-82	72.00	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]
Q1ECF5	7.5e-80	72.02	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
O80839	1.6e-77	66.19	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
O04193	5.4e-70	63.35	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q7F9R9	3.5e-69	63.55	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Csor.00g273960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597154.1	6.16e-150	100.00	LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022934048.1	1.77e-149	99.51	LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 L...	[more]
XP_022975113.1	4.87e-147	98.53	LIM domain-containing protein PLIM2c-like [Cucurbita maxima]	[more]
XP_008438078.1	9.25e-137	92.61	PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo]	[more]
XP_011650764.2	2.75e-136	92.61	LIM domain-containing protein PLIM2b isoform X2 [Cucumis sativus]	[more]

BLAST of Csor.00g273960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6K2	8.56e-150	99.51	LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1IIB7	2.36e-147	98.53	LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3AW36	4.48e-137	92.61	LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC10348329...	[more]
A0A0A0L4A1	1.09e-135	92.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1	[more]
A0A6J1E9B9	5.20e-134	91.67	LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Csor.00g273960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61230.1	1.1e-83	72.00	GATA type zinc finger transcription factor family protein	[more]
AT1G01780.1	5.3e-81	72.02	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	1.1e-78	66.19	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	3.8e-71	63.35	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	1.2e-69	63.74	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 105..157 e-value: 4.3E-13 score: 59.5 coord: 9..61 e-value: 1.1E-12 score: 58.2
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 106..161 e-value: 9.1E-11 score: 41.8 coord: 10..65 e-value: 3.6E-13 score: 49.5
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.4839
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 104..164 score: 12.503799
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 6..74 e-value: 3.5E-19 score: 70.8 coord: 100..170 e-value: 5.4E-19 score: 70.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..204
None	No IPR available	PANTHER	PTHR24206:SF69	LIM DOMAIN-CONTAINING PROTEIN PLIM2C	coord: 1..201
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..201
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.74823E-37 score: 122.188
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 132..171
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 98..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g273960.m01	Csor.00g273960.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding