Csor.00g273780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g273780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 8184561 .. 8185739 (+)
RNA-Seq ExpressionCsor.00g273780
SyntenyCsor.00g273780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATGTAAGAAAAGCAAGAACCTTATCCAATGGCTTCCTTCATCATCCTCTCTTCAAAAAAGCTTCCATTTTTAATGCCTTTTAGCTTCAAATCCACCGACCCATTTCCCATTTTTGCATTTTGAATAAATTCTTGCAAGCTTTTTTTAAATTTTTTATAATTTTTTTGGAGTTTTGAATAAATTTAAAATGCTGTTCTTGTTCTCACAGGCGGTGAAAATGACGTTTTTGGTAGTTGTTTTGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGTGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATAAGTTGCAGAGCTCACACTGCTTCAATAACGGAGTTCGGCGGCGTTGGCGACGGCGAGACGTCGAATACGAAGGCGTTTCAGGCGGCGGTGGAGAGGTTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACCGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAGGTAGAAATAAATAACCTTTTATTTTCCTCTAAATTTAAATAAATAAATATATATATATATTATTTATTGGGGTTGAATTTAAAAAAAATTTAAATAATAATAATAATAATTAAAAATAAAAAAATAAAAAAATAATAATAATTTATATATTAGTTCACGAGTGATGTGTTACTAGATCCAAATTTGTTAAAAATATTTATAATAGAGTTGCAGCATCACGTGAATTGATAGCTTCATATTTGTTTCCTATCCTTTTTTCTTTTTTTTCTTTTTTTTTTTTTAATTTAAAAAAAAAATAAAATTTTAAATAAGGATAAAAATGAGAGTAATTATAAGTGTGGAGAACAATGAGTTTCTATTGTTGATGCCTTTTGCTTCCACAATTCATAGGACTCTTGTTATGGGTCGGGTAGGTTAAGGTTCAAATTCCTCCTTCCCGTAAAATTCATTTTGTTCAAAAGGTTAGAGGTTCAAATTCTATCTTCATGTAAAATTCAGGTTCAAGAGGTCAGAGGGTCAAATTCGTCATTCCCATAAAATTCACTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCATTATGTAG

mRNA sequence

ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATGCGGTGAAAATGACGTTTTTGGTAGTTGTTTTGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGACTCTTGTTATGGGTCGGGTAGGTTAAGGTTCAAGAGGTCAGAGGGTCAAATTCGTCATTCCCATAAAATTCACTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCATTATGTAG

Coding sequence (CDS)

ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATGCGGTGAAAATGACGTTTTTGGTAGTTGTTTTGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGACTCTTGTTATGGGTCGGGTAGGTTAAGGTTCAAGAGGTCAGAGGGTCAAATTCGTCATTCCCATAAAATTCACTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCATTATGTAG

Protein sequence

MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRLRFKRSEGQIRHSHKIHFVREVRGSNSSIM
Homology
[Close]
BLAST of Csor.00g273780 vs. NCBI nr
Match: KAG6597136.1 (hypothetical protein SDJN03_10316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (388), Expect = 5.61e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRLRFKRSEGQIRHS 60
          MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRLRFKRSEGQIRHS
Sbjct: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRLRFKRSEGQIRHS 60

Query: 61 HKIHFVREVRGSNSSIM 77
          HKIHFVREVRGSNSSIM
Sbjct: 61 HKIHFVREVRGSNSSIM 77

[Close]
BLAST of Csor.00g273780 vs. NCBI nr
Match: XP_022935413.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 1.15e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK
Sbjct: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39

[Close]
BLAST of Csor.00g273780 vs. NCBI nr
Match: XP_023540734.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 5.99e-12
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAA-LMGEVEGRK 39
          MPMEELCKNPIKAH VKMTFLV+VLAAAAA LMGEVEGRK
Sbjct: 1  MPMEELCKNPIKAHPVKMTFLVLVLAAAAAALMGEVEGRK 40

[Close]
BLAST of Csor.00g273780 vs. NCBI nr
Match: XP_022974569.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 3.47e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          MPMEELCKNPIKA AVKMTFLV+VLAAA  LMGEVEGRK
Sbjct: 1  MPMEELCKNPIKADAVKMTFLVLVLAAA--LMGEVEGRK 37

[Close]
BLAST of Csor.00g273780 vs. NCBI nr
Match: XP_022147419.1 (probable polygalacturonase [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 7.66e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 3  MEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          ME+LCKNPIKAHA KM   VVVLAAA A  GEVEGR+
Sbjct: 1  MEKLCKNPIKAHAAKMAVFVVVLAAALA--GEVEGRR 35

[Close]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match: A0A6J1FAH2 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111442298 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.57e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK
Sbjct: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39

[Close]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match: A0A6J1II01 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111473265 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.68e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1  MPMEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          MPMEELCKNPIKA AVKMTFLV+VLAAA  LMGEVEGRK
Sbjct: 1  MPMEELCKNPIKADAVKMTFLVLVLAAA--LMGEVEGRK 37

[Close]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match: A0A6J1D0Y3 (probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111016350 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.71e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 3  MEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRK 39
          ME+LCKNPIKAHA KM   VVVLAAA A  GEVEGR+
Sbjct: 1  MEKLCKNPIKAHAAKMAVFVVVLAAALA--GEVEGRR 35

[Close]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match: A0A6J1IVW9 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111479095 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.30e-05
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 3  MEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRL 48
          MEEL K PIKA  VKM  LV++LAAA  +MGEVEGRK   +  GR+
Sbjct: 1  MEELYKKPIKAQVVKMAILVLILAAA--MMGEVEGRKGRKHKKGRI 44

[Close]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match: A0A6J1E951 (uncharacterized protein LOC111431815 OS=Cucurbita moschata OX=3662 GN=LOC111431815 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.35e-05
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 3    MEELCKNPIKAHAVKMTFLVVVLAAAAALMGEVEGRKDSCYGSGRL 48
            MEEL K PIKA  VKM  LV++LAAA  +MGEVEGRK   +  GR+
Sbjct: 967  MEELYKKPIKAQVVKMAILVLILAAA--MMGEVEGRKGRKHRKGRI 1010

The following BLAST results are available for this feature:
BLAST of Csor.00g273780 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g273780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597136.15.61e-47100.00hypothetical protein SDJN03_10316, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022935413.11.15e-14100.00probable polygalacturonase [Cucurbita moschata][more]
XP_023540734.15.99e-1292.50probable polygalacturonase [Cucurbita pepo subsp. pepo][more]
XP_022974569.13.47e-1089.74probable polygalacturonase [Cucurbita maxima][more]
XP_022147419.17.66e-0675.68probable polygalacturonase [Momordica charantia][more]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FAH25.57e-15100.00probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111442298 PE=3 SV... [more]
A0A6J1II011.68e-1089.74probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111473265 PE=3 SV=1[more]
A0A6J1D0Y33.71e-0675.68probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111016350 PE=3 S... [more]
A0A6J1IVW91.30e-0560.87probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111479095 PE=3 SV=1[more]
A0A6J1E9511.35e-0560.87uncharacterized protein LOC111431815 OS=Cucurbita moschata OX=3662 GN=LOC1114318... [more]
BLAST of Csor.00g273780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g273780.m01Csor.00g273780.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 glycosyltransferase activity
molecular_function GO:0004650 polygalacturonase activity