Csor.00g273620 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g273620
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	actin-depolymerizing factor
Location	Csor_Chr06: 8057048 .. 8057634 (-)
RNA-Seq Expression	Csor.00g273620
Synteny	Csor.00g273620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGTTTCAAACTCGTTCTTTATTTGATTTCTTCTCAATAATTGTGTTTTCACATGTCTTTTGCAATTTCGATAGGCAAATTCAGCATCGGGAATGGCAGTTCACGACGACTGCAAGCTAAAGTTTTTGGATCTTAAGGCTAAAAGAAAGTTCAGATTCATCGTGTTCAAGATCGATGAGAATATCCAACAGGTGACGGTCGAGAGAGTCGGTGGTCACGATGAAACCTACAACAACTTCCTCGCAGCCATCCCTGCTAATGAATGTCGTTACGCTGTCTATGATTTCGATTTCACAACCGACGAGAATTGCCAAAAGAGCAAGATCTTCTTTATTGCCTGGTATTATCCCGACATATTTATCGTACTATTTAATTTACTAACTTACGAACCTTTTCTTTTTTCCTTAAATTTTTATAATTTGTTTATGTAGGTCACCCGACTCGTCGAAAATAAGAAGTAAAATGTTGTATGCAAGCTCGAGGGATAGATTCAAGAGAGAATTGGATGGAATTCAAGTTGAATTACAGGCAACAGATCCCAGTGAGATGAGCATTGATATCATTAAAGCAAGAGCTATCTGA

mRNA sequence

ATGGCAAATTCAGCATCGGGAATGGCAGTTCACGACGACTGCAAGCTAAAGTTTTTGGATCTTAAGGCTAAAAGAAAGTTCAGATTCATCGTGTTCAAGATCGATGAGAATATCCAACAGGTGACGGTCGAGAGAGTCGGTGGTCACGATGAAACCTACAACAACTTCCTCGCAGCCATCCCTGCTAATGAATGTCGTTACGCTGTCTATGATTTCGATTTCACAACCGACGAGAATTGCCAAAAGAGCAAGATCTTCTTTATTGCCTGGTCACCCGACTCGTCGAAAATAAGAAGTAAAATGTTGTATGCAAGCTCGAGGGATAGATTCAAGAGAGAATTGGATGGAATTCAAGTTGAATTACAGGCAACAGATCCCAGTGAGATGAGCATTGATATCATTAAAGCAAGAGCTATCTGA

Coding sequence (CDS)

ATGGCAAATTCAGCATCGGGAATGGCAGTTCACGACGACTGCAAGCTAAAGTTTTTGGATCTTAAGGCTAAAAGAAAGTTCAGATTCATCGTGTTCAAGATCGATGAGAATATCCAACAGGTGACGGTCGAGAGAGTCGGTGGTCACGATGAAACCTACAACAACTTCCTCGCAGCCATCCCTGCTAATGAATGTCGTTACGCTGTCTATGATTTCGATTTCACAACCGACGAGAATTGCCAAAAGAGCAAGATCTTCTTTATTGCCTGGTCACCCGACTCGTCGAAAATAAGAAGTAAAATGTTGTATGCAAGCTCGAGGGATAGATTCAAGAGAGAATTGGATGGAATTCAAGTTGAATTACAGGCAACAGATCCCAGTGAGATGAGCATTGATATCATTAAAGCAAGAGCTATCTGA

Protein sequence

MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIPANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVELQATDPSEMSIDIIKARAI

Homology

[Close]

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot
Match: P30175 (Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANS+SGMAV D+CKLKF++LKAKR FRFIVFKI+E +QQVTVER+G  +E+Y++F   +
Sbjct: 1   MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECL 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P NECRYAV+DFDF TDENCQKSKIFFI+WSPD+S++RSKMLYAS++DRFKRELDGIQVE
Sbjct: 61  PPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARA 139
           LQATDPSEMS+DIIKARA
Sbjct: 121 LQATDPSEMSMDIIKARA 138

[Close]

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot
Match: Q7XSN9 (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 PE=2 SV=2)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-58
Identity = 108/139 (77.70%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGMAV D+CKLKF +LK+KR FRFI FKIDE  QQV V+R+G   +TY++F A++
Sbjct: 1   MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASM 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PA+ECRYAV+DFDF TDENCQKSKIFFI+WSPD+SK+RSKMLYASS+DRFKRELDGIQVE
Sbjct: 61  PASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 140
           LQATDPSEMS+DI+KARA+
Sbjct: 121 LQATDPSEMSMDIVKARAL 139

[Close]

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot
Match: Q6EUH7 (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-58
Identity = 106/139 (76.26%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           M+NSASGMAV D+CKLKFL+LKAKR FRFIVFKI+E +QQV V+R+G   E+Y++F A +
Sbjct: 1   MSNSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACL 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PA+ECRYAV+DFDF TDENCQKSKIFFI+W+PD+S++RSKMLYASS+DRFKRELDGIQVE
Sbjct: 61  PADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 140
           LQATDPSEMS+DI+K+RA+
Sbjct: 121 LQATDPSEMSMDIVKSRAL 139

[Close]

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot
Match: Q570Y6 (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana OX=3702 GN=ADF8 PE=2 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 9.3e-58
Identity = 104/137 (75.91%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGM V+D+CK+KFL+LKAKR +RFIVFKIDE  QQV +E++G  +ETY++F ++I
Sbjct: 1   MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P +ECRYAVYDFDFTT++NCQKSKIFFIAWSPD+S++RSKMLYASS+DRFKRE++GIQVE
Sbjct: 61  PDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVE 120

Query: 121 LQATDPSEMSIDIIKAR 138
           LQATDPSEMS+DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot
Match: Q9LQ81 (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 106/137 (77.37%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGM V D+CKLKFL+LKAKR +RFIVFKIDE  QQV ++++G  +ETY +F  +I
Sbjct: 1   MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P +ECRYAVYD+DFTT ENCQKSKIFFIAWSPD+S++RSKMLYASS+DRFKRELDGIQVE
Sbjct: 61  PEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKAR 138
           LQATDPSEMS+DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Csor.00g273620 vs. NCBI nr
Match: KAG6597120.1 (hypothetical protein SDJN03_10300, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028584.1 hypothetical protein SDJN02_09765, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280 bits (716), Expect = 4.82e-95
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI
Sbjct: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE
Sbjct: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 139
           LQATDPSEMSIDIIKARAI
Sbjct: 121 LQATDPSEMSIDIIKARAI 139

[Close]

BLAST of Csor.00g273620 vs. NCBI nr
Match: XP_022974602.1 (actin-depolymerizing factor 7-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 276 bits (707), Expect = 1.14e-93
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFLAAI
Sbjct: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLAAI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVE
Sbjct: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 139
           LQATDPSEMSIDIIKARAI
Sbjct: 121 LQATDPSEMSIDIIKARAI 139

[Close]

BLAST of Csor.00g273620 vs. NCBI nr
Match: XP_022974601.1 (actin-depolymerizing factor 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 275 bits (702), Expect = 9.90e-93
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 2   ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIP 61
           ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFLAAIP
Sbjct: 14  ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLAAIP 73

Query: 62  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 121
           ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVEL
Sbjct: 74  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVEL 133

Query: 122 QATDPSEMSIDIIKARAI 139
           QATDPSEMSIDIIKARAI
Sbjct: 134 QATDPSEMSIDIIKARAI 151

[Close]

BLAST of Csor.00g273620 vs. NCBI nr
Match: XP_022944628.1 (actin-depolymerizing factor 6-like [Cucurbita moschata])

HSP 1 Score: 274 bits (701), Expect = 1.41e-92
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIP 61
           ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFL AIP
Sbjct: 14  ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLTAIP 73

Query: 62  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 121
           ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL
Sbjct: 74  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 133

Query: 122 QATDPSEMSIDIIKARAI 139
           QATDPSEMSIDIIKARAI
Sbjct: 134 QATDPSEMSIDIIKARAI 151

[Close]

BLAST of Csor.00g273620 vs. NCBI nr
Match: XP_023540370.1 (actin-depolymerizing factor-like [Cucurbita pepo subsp. pepo] >XP_023540371.1 actin-depolymerizing factor-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (675), Expect = 6.82e-89
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 8   MAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIPANECRY 67
           MA+HDDCKLKFLDLK KRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIPANECRY
Sbjct: 1   MAIHDDCKLKFLDLKTKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIPANECRY 60

Query: 68  AVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVELQATDPS 127
           AVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVELQATDPS
Sbjct: 61  AVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVELQATDPS 120

Query: 128 EMSIDIIKARAI 139
           EMSIDIIKARAI
Sbjct: 121 EMSIDIIKARAI 132

[Close]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL
Match: A0A6J1IAQ3 (actin-depolymerizing factor 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473285 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 5.50e-94
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFLAAI
Sbjct: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLAAI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVE
Sbjct: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 139
           LQATDPSEMSIDIIKARAI
Sbjct: 121 LQATDPSEMSIDIIKARAI 139

[Close]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL
Match: A0A6J1IBU0 (actin-depolymerizing factor 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473285 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 4.79e-93
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 2   ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIP 61
           ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFLAAIP
Sbjct: 14  ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLAAIP 73

Query: 62  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 121
           ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVEL
Sbjct: 74  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVEL 133

Query: 122 QATDPSEMSIDIIKARAI 139
           QATDPSEMSIDIIKARAI
Sbjct: 134 QATDPSEMSIDIIKARAI 151

[Close]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL
Match: A0A6J1FY87 (actin-depolymerizing factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC111449032 PE=3 SV=1)

HSP 1 Score: 274 bits (701), Expect = 6.81e-93
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 2   ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIP 61
           ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFL AIP
Sbjct: 14  ANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLTAIP 73

Query: 62  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 121
           ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL
Sbjct: 74  ANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVEL 133

Query: 122 QATDPSEMSIDIIKARAI 139
           QATDPSEMSIDIIKARAI
Sbjct: 134 QATDPSEMSIDIIKARAI 151

[Close]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL
Match: A0A6J1IGS4 (actin-depolymerizing factor-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111473285 PE=3 SV=1)

HSP 1 Score: 264 bits (674), Expect = 4.69e-89
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 8   MAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAIPANECRY 67
           MAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQV VERVGGHDETYNNFLAAIPANECRY
Sbjct: 1   MAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVMVERVGGHDETYNNFLAAIPANECRY 60

Query: 68  AVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVELQATDPS 127
           AVYDFDFTTDENCQKSKIFFIAWSPDSS+IRSKMLYASSRDRFKRELDGIQVELQATDPS
Sbjct: 61  AVYDFDFTTDENCQKSKIFFIAWSPDSSRIRSKMLYASSRDRFKRELDGIQVELQATDPS 120

Query: 128 EMSIDIIKARAI 139
           EMSIDIIKARAI
Sbjct: 121 EMSIDIIKARAI 132

[Close]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL
Match: A0A6J1D1Y2 (actin-depolymerizing factor 6-like OS=Momordica charantia OX=3673 GN=LOC111016286 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 1.64e-86
Identity = 123/139 (88.49%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGMAVHD+CKLKFLDLKAKRK+RFIVFKI+ENIQQVTV++VGGH+ETY++F+A+I
Sbjct: 1   MANSASGMAVHDECKLKFLDLKAKRKYRFIVFKIEENIQQVTVDKVGGHNETYDDFIASI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PANECRYAV+DFDFTTDENCQKSKIFFI+WSPD+SKIRSKMLYASS+DRFKRELDGIQVE
Sbjct: 61  PANECRYAVFDFDFTTDENCQKSKIFFISWSPDTSKIRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 139
           LQATDPSEMS DIIK RAI
Sbjct: 121 LQATDPSEMSFDIIKGRAI 139

[Close]

BLAST of Csor.00g273620 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 224.2 bits (570), Expect = 6.6e-59
Identity = 104/137 (75.91%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGM V+D+CK+KFL+LKAKR +RFIVFKIDE  QQV +E++G  +ETY++F ++I
Sbjct: 1   MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P +ECRYAVYDFDFTT++NCQKSKIFFIAWSPD+S++RSKMLYASS+DRFKRE++GIQVE
Sbjct: 61  PDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVE 120

Query: 121 LQATDPSEMSIDIIKAR 138
           LQATDPSEMS+DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Csor.00g273620 vs. TAIR 10
Match: AT1G01750.1 (actin depolymerizing factor 11 )

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-59
Identity = 106/137 (77.37%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MANSASGM V D+CKLKFL+LKAKR +RFIVFKIDE  QQV ++++G  +ETY +F  +I
Sbjct: 1   MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSI 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P +ECRYAVYD+DFTT ENCQKSKIFFIAWSPD+S++RSKMLYASS+DRFKRELDGIQVE
Sbjct: 61  PEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKAR 138
           LQATDPSEMS+DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Csor.00g273620 vs. TAIR 10
Match: AT4G25590.1 (actin depolymerizing factor 7 )

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-59
Identity = 107/139 (76.98%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MAN+ASGMAV D+CKLKFL+LK+KR +RFI+F+ID   QQV VE++G  DETY++F A++
Sbjct: 1   MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDG--QQVVVEKLGNPDETYDDFTASL 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PANECRYAV+DFDF TDENCQKSKIFFIAWSPDSS++R KM+YASS+DRFKRELDGIQVE
Sbjct: 61  PANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 140
           LQATDPSEMS DIIK+RA+
Sbjct: 121 LQATDPSEMSFDIIKSRAL 137

[Close]

BLAST of Csor.00g273620 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 )

HSP 1 Score: 214.2 bits (544), Expect = 6.9e-56
Identity = 100/138 (72.46%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MAN+ASGMAVHDDCKL+FL+LKAKR  RFIV+KI+E  +QV VE+VG   +TY  F A +
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           PA+ECRYA+YDFDF T ENCQKSKIFFIAW PD +K+RSKM+YASS+DRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARA 139
           LQATDP+EM +D+ ++RA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138

[Close]

BLAST of Csor.00g273620 vs. TAIR 10
Match: AT5G52360.1 (actin depolymerizing factor 10 )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MANSASGMAVHDDCKLKFLDLKAKRKFRFIVFKIDENIQQVTVERVGGHDETYNNFLAAI 60
           MAN+ASGMAV D+CKLKFL+LKAKR +RFI+F+ID   QQV VE++G   E Y++F   +
Sbjct: 1   MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDG--QQVVVEKLGSPQENYDDFTNYL 60

Query: 61  PANECRYAVYDFDFTTDENCQKSKIFFIAWSPDSSKIRSKMLYASSRDRFKRELDGIQVE 120
           P NECRYAVYDFDFTT EN QKSKIFFIAWSPDSS++R KM+YASS+DRFKRELDGIQVE
Sbjct: 61  PPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSIDIIKARAI 140
           LQATDPSEMS+DIIK+RA+
Sbjct: 121 LQATDPSEMSLDIIKSRAL 137

The following BLAST results are available for this feature:

BLAST of Csor.00g273620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30175	2.2e-59	78.26	Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1	[more]
Q7XSN9	1.4e-58	77.70	Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 P...	[more]
Q6EUH7	2.5e-58	76.26	Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF1 P...	[more]
Q570Y6	9.3e-58	75.91	Actin-depolymerizing factor 8 OS=Arabidopsis thaliana OX=3702 GN=ADF8 PE=2 SV=2	[more]
Q9LQ81	1.2e-57	77.37	Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=...	[more]

BLAST of Csor.00g273620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597120.1	4.82e-95	100.00	hypothetical protein SDJN03_10300, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022974602.1	1.14e-93	98.56	actin-depolymerizing factor 7-like isoform X2 [Cucurbita maxima]	[more]
XP_022974601.1	9.90e-93	98.55	actin-depolymerizing factor 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022944628.1	1.41e-92	98.55	actin-depolymerizing factor 6-like [Cucurbita moschata]	[more]
XP_023540370.1	6.82e-89	97.73	actin-depolymerizing factor-like [Cucurbita pepo subsp. pepo] >XP_023540371.1 ac...	[more]

BLAST of Csor.00g273620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAQ3	5.50e-94	98.56	actin-depolymerizing factor 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1IBU0	4.79e-93	98.55	actin-depolymerizing factor 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FY87	6.81e-93	98.55	actin-depolymerizing factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC111449032...	[more]
A0A6J1IGS4	4.69e-89	98.48	actin-depolymerizing factor-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1D1Y2	1.64e-86	88.49	actin-depolymerizing factor 6-like OS=Momordica charantia OX=3673 GN=LOC11101628...	[more]

BLAST of Csor.00g273620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00680.1	6.6e-59	75.91	actin depolymerizing factor 8	[more]
AT1G01750.1	8.7e-59	77.37	actin depolymerizing factor 11	[more]
AT4G25590.1	8.7e-59	76.98	actin depolymerizing factor 7	[more]
AT3G46010.1	6.9e-56	72.46	actin depolymerizing factor 1	[more]
AT5G52360.1	1.5e-55	74.82	actin depolymerizing factor 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 12..139 e-value: 1.6E-56 score: 203.8
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 14..136 e-value: 2.4E-37 score: 127.5
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 5..139 score: 37.637192
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 1..139 e-value: 1.4E-52 score: 179.8
None	No IPR available	PANTHER	PTHR11913:SF92	COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN	coord: 2..139
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 2..137
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 2..139
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 6..138 e-value: 3.34658E-63 score: 187.764

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g273620.m01	Csor.00g273620.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0003779	actin binding