Csor.00g272120 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g272120
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 13860928 .. 13861245 (-)
RNA-Seq Expression	Csor.00g272120
Synteny	Csor.00g272120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAGTGATTGTGATTTTGAATAACGAAGGGTACACGTGGCGGGATTTGCAGGCACGGGTGACGGAAAAGCGTTACCCGCAAGTGGGATTAAAGGAACACCAGATGCCATTAAAGAAGCAACAACAAGGTAGAGTGTTCGACGTGACGGAAATGGGAGGAGCGCGAAAATTCAAGCAGAACAACGTGTCGATCCCACGTCGTCCGCCTAAATCTAATGCTACTAAACCGCCCAAACCTGTCGATGAAGATCTCTACAAAATCCCACCAGAGATGCTCCATTCTTCAAAGCGGGTACATTCCTTCTCCGACTAA

mRNA sequence

ATGAATGAAGTGATTGTGATTTTGAATAACGAAGGGTACACGTGGCGGGATTTGCAGGCACGGGTGACGGAAAAGCGTTACCCGCAAGTGGGATTAAAGGAACACCAGATGCCATTAAAGAAGCAACAACAAGGTAGAGTGTTCGACGTGACGGAAATGGGAGGAGCGCGAAAATTCAAGCAGAACAACGTGTCGATCCCACGTCGTCCGCCTAAATCTAATGCTACTAAACCGCCCAAACCTGTCGATGAAGATCTCTACAAAATCCCACCAGAGATGCTCCATTCTTCAAAGCGGGTACATTCCTTCTCCGACTAA

Coding sequence (CDS)

ATGAATGAAGTGATTGTGATTTTGAATAACGAAGGGTACACGTGGCGGGATTTGCAGGCACGGGTGACGGAAAAGCGTTACCCGCAAGTGGGATTAAAGGAACACCAGATGCCATTAAAGAAGCAACAACAAGGTAGAGTGTTCGACGTGACGGAAATGGGAGGAGCGCGAAAATTCAAGCAGAACAACGTGTCGATCCCACGTCGTCCGCCTAAATCTAATGCTACTAAACCGCCCAAACCTGTCGATGAAGATCTCTACAAAATCCCACCAGAGATGCTCCATTCTTCAAAGCGGGTACATTCCTTCTCCGACTAA

Protein sequence

MNEVIVILNNEGYTWRDLQARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKPPKPVDEDLYKIPPEMLHSSKRVHSFSD

Homology

[Close]

BLAST of Csor.00g272120 vs. NCBI nr
Match: KAG6586177.1 (hypothetical protein SDJN03_18910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (542), Expect = 1.35e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MNEVIVILNNEGYTWRDLQARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFK 60
           MNEVIVILNNEGYTWRDLQARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFK
Sbjct: 1   MNEVIVILNNEGYTWRDLQARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFK 60

Query: 61  QNNVSIPRRPPKSNATKPPKPVDEDLYKIPPEMLHSSKRVHSFSD 105
           QNNVSIPRRPPKSNATKPPKPVDEDLYKIPPEMLHSSKRVHSFSD
Sbjct: 61  QNNVSIPRRPPKSNATKPPKPVDEDLYKIPPEMLHSSKRVHSFSD 105

[Close]

BLAST of Csor.00g272120 vs. NCBI nr
Match: KAG7021009.1 (hypothetical protein SDJN02_17697 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (416), Expect = 1.61e-49
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 78
           +ARVTEKRYPQ GLKEHQMPLKKQQQGRVFDVTE GGARKFKQN+VSIPRRPPKSNATKP
Sbjct: 82  KARVTEKRYPQAGLKEHQMPLKKQQQGRVFDVTETGGARKFKQNDVSIPRRPPKSNATKP 141

Query: 79  PKPVDEDLYKIPPEMLHSSKRVHSFS 104
           PKPVDEDLYKIPPE+LHSSKRVHSFS
Sbjct: 142 PKPVDEDLYKIPPELLHSSKRVHSFS 167

[Close]

BLAST of Csor.00g272120 vs. NCBI nr
Match: XP_022937721.1 (uncharacterized protein LOC111444037 [Cucurbita moschata])

HSP 1 Score: 161 bits (408), Expect = 3.60e-48
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 78
           +ARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP
Sbjct: 82  KARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 141

Query: 79  PKPVDEDLYKIPPEMLHSSKR 99
           PKPVDEDLYKIPPEMLHSSKR
Sbjct: 142 PKPVDEDLYKIPPEMLHSSKR 162

[Close]

BLAST of Csor.00g272120 vs. NCBI nr
Match: XP_023538023.1 (uncharacterized protein LOC111798907 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (394), Expect = 4.83e-46
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 78
           +ARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTE GGARKFKQN+VSIPRRPPKSNATKP
Sbjct: 82  KARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTETGGARKFKQNDVSIPRRPPKSNATKP 141

Query: 79  PKPVDEDLYKIPPEMLHSSKR 99
           PKPVDEDLYKIPPE+LHSSKR
Sbjct: 142 PKPVDEDLYKIPPELLHSSKR 162

[Close]

BLAST of Csor.00g272120 vs. NCBI nr
Match: XP_022965976.1 (uncharacterized protein LOC111465695 [Cucurbita maxima])

HSP 1 Score: 142 bits (357), Expect = 2.00e-40
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 19  QARVTEKRYPQVGL-KEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATK 78
           +ARVTEKRYPQVGL KEHQ PLKKQQ GRVFDVTE GGARKFKQN+VSIPRRPPKSNATK
Sbjct: 82  KARVTEKRYPQVGLIKEHQTPLKKQQ-GRVFDVTETGGARKFKQNDVSIPRRPPKSNATK 141

Query: 79  PPKPVDEDLYKIPPEMLHSSKR 99
           PP+PVDEDLYKIPPE+LHSSKR
Sbjct: 142 PPRPVDEDLYKIPPELLHSSKR 162

[Close]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL
Match: A0A6J1FB62 (uncharacterized protein LOC111444037 OS=Cucurbita moschata OX=3662 GN=LOC111444037 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 1.74e-48
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 78
           +ARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP
Sbjct: 82  KARVTEKRYPQVGLKEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATKP 141

Query: 79  PKPVDEDLYKIPPEMLHSSKR 99
           PKPVDEDLYKIPPEMLHSSKR
Sbjct: 142 PKPVDEDLYKIPPEMLHSSKR 162

[Close]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL
Match: A0A6J1HN41 (uncharacterized protein LOC111465695 OS=Cucurbita maxima OX=3661 GN=LOC111465695 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 9.68e-41
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 19  QARVTEKRYPQVGL-KEHQMPLKKQQQGRVFDVTEMGGARKFKQNNVSIPRRPPKSNATK 78
           +ARVTEKRYPQVGL KEHQ PLKKQQ GRVFDVTE GGARKFKQN+VSIPRRPPKSNATK
Sbjct: 82  KARVTEKRYPQVGLIKEHQTPLKKQQ-GRVFDVTETGGARKFKQNDVSIPRRPPKSNATK 141

Query: 79  PPKPVDEDLYKIPPEMLHSSKR 99
           PP+PVDEDLYKIPPE+LHSSKR
Sbjct: 142 PPRPVDEDLYKIPPELLHSSKR 162

[Close]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL
Match: A0A5D3DXR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00480 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.16e-30
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEH-QMPLKKQQQ------GRVFDVTEMGGARKFKQNNVS-IPRRP 78
           + RV EKRYP VGLKEH Q+P+KKQQ       GRVFDVTE GGARK KQN++S IPR P
Sbjct: 83  KGRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDLSSIPRPP 142

Query: 79  PKSNATKPPKPVDEDLYKIPPEMLHSSKRV 100
           P+SN T  PKPVDEDLYKIPPE+LHSSKRV
Sbjct: 143 PRSNLTTIPKPVDEDLYKIPPELLHSSKRV 172

[Close]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL
Match: A0A5A7V1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G001170 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.16e-30
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEH-QMPLKKQQQ------GRVFDVTEMGGARKFKQNNVS-IPRRP 78
           + RV EKRYP VGLKEH Q+P+KKQQ       GRVFDVTE GGARK KQN++S IPR P
Sbjct: 83  KGRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDLSSIPRPP 142

Query: 79  PKSNATKPPKPVDEDLYKIPPEMLHSSKRV 100
           P+SN T  PKPVDEDLYKIPPE+LHSSKRV
Sbjct: 143 PRSNLTTIPKPVDEDLYKIPPELLHSSKRV 172

[Close]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL
Match: A0A1S3B517 (uncharacterized protein LOC103485859 OS=Cucumis melo OX=3656 GN=LOC103485859 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.93e-30
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 19  QARVTEKRYPQVGLKEH-QMPLKKQQQ------GRVFDVTEMGGARKFKQNNVS-IPRRP 78
           + RV EKRYP VGLKEH Q+P+KKQQ       GRVFDVTE GGARK KQN++S IPR P
Sbjct: 83  KGRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDLSSIPRPP 142

Query: 79  PKSNATKPPKPVDEDLYKIPPEMLHSSKR 99
           P+SN T  PKPVDEDLYKIPPE+LHSSKR
Sbjct: 143 PRSNLTTIPKPVDEDLYKIPPELLHSSKR 171

[Close]

BLAST of Csor.00g272120 vs. TAIR 10
Match: AT5G18310.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 40  KKQQQGRVFDVT--------EMGGARKFKQNNVSIPRRPPKSNATKPPKPVDEDLYKIPP 99
           K+  Q RV DV+        ++ G ++FK N+V++          KPPKPVDEDLYKIPP
Sbjct: 95  KRGPQRRVRDVSAQSDKYYIDVNGVKQFK-NDVAL--------TCKPPKPVDEDLYKIPP 153

[Close]

BLAST of Csor.00g272120 vs. TAIR 10
Match: AT5G18310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 40  KKQQQGRVFDVT--------EMGGARKFKQNNVSIPRRPPKSNATKPPKPVDEDLYKIPP 99
           K+  Q RV DV+        ++ G ++FK N+V++          KPPKPVDEDLYKIPP
Sbjct: 67  KRGPQRRVRDVSAQSDKYYIDVNGVKQFK-NDVAL--------TCKPPKPVDEDLYKIPP 125

The following BLAST results are available for this feature:

BLAST of Csor.00g272120 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g272120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586177.1	1.35e-69	100.00	hypothetical protein SDJN03_18910, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021009.1	1.61e-49	94.19	hypothetical protein SDJN02_17697 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937721.1	3.60e-48	98.77	uncharacterized protein LOC111444037 [Cucurbita moschata]	[more]
XP_023538023.1	4.83e-46	95.06	uncharacterized protein LOC111798907 [Cucurbita pepo subsp. pepo]	[more]
XP_022965976.1	2.00e-40	90.24	uncharacterized protein LOC111465695 [Cucurbita maxima]	[more]

BLAST of Csor.00g272120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB62	1.74e-48	98.77	uncharacterized protein LOC111444037 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A6J1HN41	9.68e-41	90.24	uncharacterized protein LOC111465695 OS=Cucurbita maxima OX=3661 GN=LOC111465695...	[more]
A0A5D3DXR6	1.16e-30	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1J3	1.16e-30	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B517	4.93e-30	71.91	uncharacterized protein LOC103485859 OS=Cucumis melo OX=3656 GN=LOC103485859 PE=...	[more]

BLAST of Csor.00g272120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18310.2	2.2e-06	45.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G18310.1	2.2e-06	45.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g272120.m01	Csor.00g272120.m01	mRNA