Csor.00g269410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g269410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	SNW/SKI-interacting protein-like
Location	Csor_Chr12: 15958358 .. 15960805 (+)
RNA-Seq Expression	Csor.00g269410
Synteny	Csor.00g269410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTTACGAAGGGCGCGAAATTGCGGTATATATAGCGTCAACACTGGCCGAACATCAGTCGAACCAAATCCTCGTCGTCGTTTTCTCTGATTCTTAGCAACATCAATCGCTTTCTCTTCATTCTCATCTATCTCTCAATCTCCTCAGTCGAGGCCATAGCCATAACGCAGATCTTTCCTTCTTTCTTCTCGGAGGCGGGCACCGATCTACACGTTAACGTATCTATTTCCTAGTTGCTGTAACGAAGTCGATTTCAGCGTCTGTCTTGTTTCGGAGGTTTGTCTATCTACAAGTTTCGTTTGCTTTCTGATTAAGAATGATTGCTCTTTGAATTTGTTGTTATTTGTAGAGTGTTGATGGTGTCATTCTTCTCTCCGATGGTGAAAATCGCTATTTCGAATGCTACAGGTTAGTTCTTCTCACTTGTTTCATATTTTACTGGAGCTGGAAAGCTTGTTCTAGTACTCTGATGATCTATTCCTGTTTAGAATTGGTAAAAAATGATTTATCTATAAATACGGAATCATTGAGTTGAATACTGTTGGTGCTGTTCTTGTCTCTGGTGGTGACAATCGTAATTCCTTATGCTATAAATATTTCCTACTCATACTTTGTATGCGCGTGGAACTGGATCTTGTCTCTGCTTTCATTTCCTGTGGCTTTTTCATGGATTATTTCTCTATGTATTTGGAGTCGTTGATTTGAGTATTCAAAATTATTGCCAATAATTTCTGACGTTCTTTTATTTTACTTTGTCATGAATTCTTTTGATTATAATTCTGATTTCCAAGTTTGTTTACTCGGAAGTATAGTACTGTAAATTGTGACTTAATATTCTTTGACAAAGAACTCTCGGAAGTTATATCGTACGCAAGTAAAATTTTGTTATAGTAAGCTTCGGTTTCAAGTTTTTAAATCTATTTTCCAACTTAGAATCTATGAATGTCTAGTTACATCAGGTTTCCAGTTTTAAAATTCTACGGAAGTCAATCAATTTGATAGGCACCTGGTCGATAACTTTTCTATTCGTCTTTTGTAATTATTATTTTTTTTTATTGCATTAATCGTCTGGACTGGTTAATATCAAAGGCAGGTGACTTTTCGAGCTTTGTTTTCATTTGAATTAATAGTTGGATTGGCCTAAGCTGATGTTCTTATTCTAGTATTCTGAACATTTGGTCATATGATAGAATTAATAAAAGATTAATTTCTCAATGAATTTGGAGTCGTTAAGTTGAATGTTGAAGGTTCTTGTCAATAATTTCTGGCGTTTATTTAACTTGTTGGTTATCTGATTGTAAATTTGATCTCCAAGTTTATTGGTTGGAAGTAAAGTACGGTAGTCTGTAACTAAATATTCAAACTAGTCTCTGAAATTTGTAGTAGACGCATGTGAAGTTTTGTTATAGTTTGGTTACGTTCATGTTTTAATCTTCTCCTAAGACTCGATGAATTTATAGTCACCACTCTCATCAATATACAGTCACGTTAGCTCGAAGTTTTAAAATTCCACGAAAGTAAATCAACTCGGTAGACATCTGGTTGATAACTGCTCTCTTCTTTGATAATATTTGTTAATTGCATCAATCTTCCGACCTCCGGCTAGGTTTATATATTCTGAAGATTTGGTCATATCATAGAATGAACAAAAGATTAATTTCTCAATGAATTTGGAGTCGTTAAGTTGAGTGTTGAAGGTTCTTGTCAATGATTTCTGGCCTTTATTTAACTTGTTGGTTATCTTGATTGTAGATTTGATCTCCAAGTTTATTGGTTTGAAGTAAAGTACTGTAATCTGTAACTAAATATTCAAACAATTCTCTGAAATTTGTAGTGGACGCATGTGAAGTTTTGTTATAGTTTGGTTACGTTCATGTTTTAATCTTCTCCTAAGAGTCGATGAATTTATAGTCACCACTCACATATACAGTCACGCTCTCTTCTTTGGTAATTTTTGTTTATTGAATCAATCTTCCGACCTCCGGCTATGTTTATATCATGCTAGAAACAAATGATTCTTTGAATTGATTATTGAATTGGTATTTTAGATTAAGCTGTCTGTTAGTTTTCTCACTTGCAACAAATAAGAATACTTCATAGTAATTGATTTTCAGACTCTGCAGGTCGTATTAGGTAGTCTAAGATTGTGGCACCTCTGAAAGACCTTCCTTCTGTAAAGTCAACAACTGTAACACACTACGATCACACAAATGATCCATGTTTCAAGCAACGGTTTAGTAAATCAGAAGAAGAGCAAACTTCTGTGGTTAAGCCAAATCCTGTGCCGCCTTACTTGAAGCGGAGTGGATTTATTCCCGGGAAAGTAGAGGATTTTGGAAATGGTGCATTCCTAGAGATTCACGTTGCTCCATACCCCCTTGACATGGGTAGAGACAAATCATCAAAAGCCTGGATCAAAGATCCTTCCTGTTACTGTGGATGA

mRNA sequence

ATGGGAATTTACGAAGGGCGCGAAATTGCGTCGATTTCAGCGTCTGTCTTGTTTCGGAGAGTGTTGATGGTGTCATTCTTCTCTCCGATGGTGAAAATCGCTATTTCGAATGCTACAGGTCGTATTAGTAAATCAGAAGAAGAGCAAACTTCTGTGGTTAAGCCAAATCCTGTGCCGCCTTACTTGAAGCGGAGTGGATTTATTCCCGGGAAAGTAGAGGATTTTGGAAATGGTGCATTCCTAGAGATTCACGTTGCTCCATACCCCCTTGACATGGGTAGAGACAAATCATCAAAAGCCTGGATCAAAGATCCTTCCTGTTACTGTGGATGA

Coding sequence (CDS)

ATGGGAATTTACGAAGGGCGCGAAATTGCGTCGATTTCAGCGTCTGTCTTGTTTCGGAGAGTGTTGATGGTGTCATTCTTCTCTCCGATGGTGAAAATCGCTATTTCGAATGCTACAGGTCGTATTAGTAAATCAGAAGAAGAGCAAACTTCTGTGGTTAAGCCAAATCCTGTGCCGCCTTACTTGAAGCGGAGTGGATTTATTCCCGGGAAAGTAGAGGATTTTGGAAATGGTGCATTCCTAGAGATTCACGTTGCTCCATACCCCCTTGACATGGGTAGAGACAAATCATCAAAAGCCTGGATCAAAGATCCTTCCTGTTACTGTGGATGA

Protein sequence

MGIYEGREIASISASVLFRRVLMVSFFSPMVKIAISNATGRISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNGAFLEIHVAPYPLDMGRDKSSKAWIKDPSCYCG

Homology

[Close]

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot
Match: Q6K8D9 (SNW/SKI-interacting protein A OS=Oryza sativa subsp. japonica OX=39947 GN=SKIPA PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-09
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 40 GRISKSEEEQTSVVKPN----PVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGR 95
          G  S   +   +  KP+    PVPPY KR GF+P + EDFG+ GAF EIHVA YPL MGR
Sbjct: 32 GGESAQSDAAAAAAKPSGPAKPVPPYGKRGGFVPRRPEDFGDGGAFPEIHVAQYPLGMGR 91

[Close]

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot
Match: Q09882 (Pre-mRNA-processing protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp45 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 58  VPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRDKSSKA 101
           +PPY +R G+ P   EDFG+ GAF EIHVA YPLDMGR +S+K+
Sbjct: 43  IPPYGQRKGWFPSSPEDFGDGGAFPEIHVAQYPLDMGRKRSAKS 86

[Close]

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot
Match: Q69QB5 (SNW/SKI-interacting protein B OS=Oryza sativa subsp. japonica OX=39947 GN=SKIPB PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 56 NPVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGR 95
          NPVPPY +RS   P + EDFG+ GAF E+HVA YPLDMGR
Sbjct: 46 NPVPPYGRRSALAPRRKEDFGDGGAFPEVHVAQYPLDMGR 85

[Close]

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot
Match: P54705 (Protein snwA OS=Dictyostelium discoideum OX=44689 GN=snwA PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-08
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 44  KSEEEQTSVVKPNP---VPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRDKSSK 101
           K +++Q   +   P   +P Y  R G++P  +EDFG+ GAF EIH+  YPLDMGR   SK
Sbjct: 34  KQQQQQQQELNDKPKKVIPTYGNRKGYLPKNIEDFGDGGAFPEIHIVQYPLDMGRKGKSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot
Match: Q1JQE0 (SNW domain-containing protein 1 OS=Bos taurus OX=9913 GN=SNW1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 38 ATGRISKSEEEQTSVVKP-NPVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRD 97
          A  +       QTS+V      PPY  R G+IP  +EDFG+ GAF EIHVA YPLDMGR 
Sbjct: 20 AEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRK 79

[Close]

BLAST of Csor.00g269410 vs. NCBI nr
Match: KAG6586445.1 (SNW/SKI-interacting protein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223 bits (568), Expect = 2.10e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGIYEGREIASISASVLFRRVLMVSFFSPMVKIAISNATGRISKSEEEQTSVVKPNPVPP 60
           MGIYEGREIASISASVLFRRVLMVSFFSPMVKIAISNATGRISKSEEEQTSVVKPNPVPP
Sbjct: 1   MGIYEGREIASISASVLFRRVLMVSFFSPMVKIAISNATGRISKSEEEQTSVVKPNPVPP 60

Query: 61  YLKRSGFIPGKVEDFGNGAFLEIHVAPYPLDMGRDKSSKAWIKDPSCYCG 110
           YLKRSGFIPGKVEDFGNGAFLEIHVAPYPLDMGRDKSSKAWIKDPSCYCG
Sbjct: 61  YLKRSGFIPGKVEDFGNGAFLEIHVAPYPLDMGRDKSSKAWIKDPSCYCG 110

[Close]

BLAST of Csor.00g269410 vs. NCBI nr
Match: KAG6599470.1 (SNW/SKI-interacting protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101 bits (251), Expect = 3.29e-22
Identity = 52/64 (81.25%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGFIP KVEDFGNG AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFIPRKVEDFGNGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. NCBI nr
Match: XP_023546003.1 (SNW/SKI-interacting protein A-like [Cucurbita pepo subsp. pepo] >XP_023546004.1 SNW/SKI-interacting protein A-like [Cucurbita pepo subsp. pepo] >XP_023546005.1 SNW/SKI-interacting protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100 bits (248), Expect = 8.25e-22
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R+S SE EQTSVVK NPVPPYLKRSGFIP KVEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RLSSSEAEQTSVVKANPVPPYLKRSGFIPRKVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. NCBI nr
Match: XP_031736674.1 (SNW/SKI-interacting protein [Cucumis sativus] >KGN60592.1 hypothetical protein Csa_019350 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 5.38e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGF+P +VEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. NCBI nr
Match: XP_008458692.1 (PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_008458696.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_016902181.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_016902182.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 5.38e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGF+P +VEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL
Match: A0A6J1KD39 (SNW/SKI-interacting protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493813 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.60e-21
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE E+TSVVK NPVPPYLKRSGFIP KVEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEKTSVVKANPVPPYLKRSGFIPRKVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL
Match: A0A1S4E1T1 (SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103498019 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.60e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGF+P +VEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL
Match: A0A5D3CHM8 (SNW/SKI-interacting protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00490 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.60e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGF+P +VEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL
Match: A0A0A0LIR8 (SKIP_SNW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G00990 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.60e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSVVK NPVPPYLKRSGF+P +VEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL
Match: A0A6J1DKF4 (SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111021906 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.60e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGNG-AFLEIHVAPYPLDMGRDKSSK 100
           R S SE EQTSV+KP PVPPYLKRSGF+P KVEDFG+G AF EIH+A YPLDMGRDKSSK
Sbjct: 30  RFSTSEAEQTSVIKPIPVPPYLKRSGFVPRKVEDFGDGGAFPEIHIAQYPLDMGRDKSSK 89

Query: 101 AWIK 103
              K
Sbjct: 90  PGSK 93

[Close]

BLAST of Csor.00g269410 vs. TAIR 10
Match: AT1G77180.1 (chromatin protein family )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRDKSSK 100
           R+++SE  ++S +K   VP YL R G  P   EDFG+ GAF EIH+  YPL MG++KS+K
Sbjct: 29  RVTESETVKSSSIKFKVVPAYLNRQGLRPKNPEDFGDGGAFPEIHLPQYPLLMGKNKSNK 88

Query: 101 AWIK 104
              K
Sbjct: 89  PGAK 92

[Close]

BLAST of Csor.00g269410 vs. TAIR 10
Match: AT1G77180.2 (chromatin protein family )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRDKSSK 100
           R+++SE  ++S +K   VP YL R G  P   EDFG+ GAF EIH+  YPL MG++KS+K
Sbjct: 29  RVTESETVKSSSIKFKVVPAYLNRQGLRPKNPEDFGDGGAFPEIHLPQYPLLMGKNKSNK 88

Query: 101 AWIK 104
              K
Sbjct: 89  PGAK 92

[Close]

BLAST of Csor.00g269410 vs. TAIR 10
Match: AT1G77180.3 (chromatin protein family )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 41  RISKSEEEQTSVVKPNPVPPYLKRSGFIPGKVEDFGN-GAFLEIHVAPYPLDMGRDKSSK 100
           R+++SE  ++S +K   VP YL R G  P   EDFG+ GAF EIH+  YPL MG++KS+K
Sbjct: 29  RVTESETVKSSSIKFKVVPAYLNRQGLRPKNPEDFGDGGAFPEIHLPQYPLLMGKNKSNK 88

Query: 101 AWIK 104
              K
Sbjct: 89  PGAK 92

The following BLAST results are available for this feature:

BLAST of Csor.00g269410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6K8D9	8.3e-09	53.33	SNW/SKI-interacting protein A OS=Oryza sativa subsp. japonica OX=39947 GN=SKIPA ...	[more]
Q09882	1.1e-08	61.36	Pre-mRNA-processing protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q69QB5	3.1e-08	67.50	SNW/SKI-interacting protein B OS=Oryza sativa subsp. japonica OX=39947 GN=SKIPB ...	[more]
P54705	9.2e-08	44.26	Protein snwA OS=Dictyostelium discoideum OX=44689 GN=snwA PE=1 SV=1	[more]
Q1JQE0	1.6e-07	52.46	SNW domain-containing protein 1 OS=Bos taurus OX=9913 GN=SNW1 PE=2 SV=1	[more]

BLAST of Csor.00g269410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586445.1	2.10e-73	100.00	SNW/SKI-interacting protein A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6599470.1	3.29e-22	81.25	SNW/SKI-interacting protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023546003.1	8.25e-22	79.69	SNW/SKI-interacting protein A-like [Cucurbita pepo subsp. pepo] >XP_023546004.1 ...	[more]
XP_031736674.1	5.38e-21	76.56	SNW/SKI-interacting protein [Cucumis sativus] >KGN60592.1 hypothetical protein C...	[more]
XP_008458692.1	5.38e-21	76.56	PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_008458696.1 PREDI...	[more]

BLAST of Csor.00g269410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KD39	2.60e-21	78.13	SNW/SKI-interacting protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493813 PE=...	[more]
A0A1S4E1T1	2.60e-21	76.56	SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103498019 PE=3 SV...	[more]
A0A5D3CHM8	2.60e-21	76.56	SNW/SKI-interacting protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LIR8	2.60e-21	76.56	SKIP_SNW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G00990 PE=...	[more]
A0A6J1DKF4	2.60e-21	76.56	SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111021906 ...	[more]

BLAST of Csor.00g269410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77180.1	1.0e-09	48.44	chromatin protein family	[more]
AT1G77180.2	1.0e-09	48.44	chromatin protein family	[more]
AT1G77180.3	1.0e-09	48.44	chromatin protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12096:SF0	SNW DOMAIN-CONTAINING PROTEIN 1	coord: 44..98
IPR017862	SKI-interacting protein, SKIP	PANTHER	PTHR12096	NUCLEAR PROTEIN SKIP-RELATED	coord: 44..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g269410.m01	Csor.00g269410.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex