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Csor.00g267550 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinternalpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.AAGCCCTCTTTGTTTCTCTTCCGACGTAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGTAGCCAAGCTTCCTTGCTCCGATGAACTTTCAGGCCTGATTCGATTTCCTTACCGATTTTTGGTGCGGTTTTATCTCACTTTCTTTTCATTTTTGGTGGTTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCATATACAACTCCATTTCGAAAAACTATCCACCAACTACTCAATCTCCGGTAAGCGTAAATTTCCCTTTCTGTATACGTAATGACCAAACTTTCCTTGTATGTGTTTGACCATTGATTTTAGACAATTACGATGGTCCTGAATTGAAATATGTGTGAAAATGTAGATCTATGAACATTTTGGGAATAAGGGGAGAATGAGATGAATGAAATTGTCTAATTTTTCTAAATTAGTTTTACTTTTATAAATGTCTTGACAATAATATTGATCTAATTATGGGTTGATTTATATCATTTTTATGTTTTTCTTTGTATATCAACTAGTTTTGCCTTTTTAAGTTGGAATATTGCTGAAATTTATTGAGATTTTATACAAACTTCGTATCAATGTCGACAATAATATAATGTAACAACTCAAGCCCACTGCAAGCGGATATTATTTTCATTGGGCTTTTATTTTTGGGCTTCCCCTTAAGGTTTTTAAAACGTGTCTACTGCTAGGGAGAGATTTCCACACCCTAGGGAATGCTTTGATCCCCTCTCCAACCGATGTAGCAATCCACCACCTTGGGAGCCAACATTCTCGCTGGCACACCACCACCTTGGGGGCCAACATCCTCGCTGGCACACCACCTGGTGTTTGGCTCTCATACCATTTCTAACAAGTCAAACACCAGGCCATGTGTCAGTGAGGAGGCTGAGCTCCAAAGGGGAGTGGACATGAGACACAGTAAGGATGCTGGGCCACGAAGAGGGGTGGATTAGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGCCAACGAGGACACTGGGCCCTGAAGGGGGGGAGGTGGATTGTGAGATCAGTGAGGAGGCTGAGCTCCGAGGACACTGAGGGCCCTGAAGGGGGGGAGGTGGATTGGGATCAGTGAGGAGGCTGAGTGGACATGAGACACAGTAAGGATGCTGGGCCACGAAGAGGGGTGGATTAGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGCCAACGAGGACACTGGGCCCTGAAGGGGGGGGGGGGGGGGGGGGAGGTGGATTGTGAGATCCCATCTTGGTAGGGGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAGATACGTTTTAAAAACCTTGAGGGGAATCCCGAAAGGATGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAATAAATGTTGAATTCGTCAATGCAAGTTCTATTGTCTCTGAATTTATACTACCATCTAGCAGCTAATCCATTAATCTAATAGCATCCTCTTTGAAACTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGGCCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTGATGCGTTGTGAATGGTTCCGTTAGCAATGTATTTAAGCATCAATTCATGAAACATGTAAGGAAACAGAATTTTATTTCTATTTTTAACATTCTAGATTATCAAAGAATTGATGTTATGACTGTGGAACAAAGCCACGAGTATGAAGGCCTTTAAAGCAATAAAAACAAATTTTCTTTATTGCTAAACTGTATTTTCGTTTTTCCCATGCATTTCGATGAGAAGCCATGTGTTTAAATTTGTGGACTGCCAGCTCTGAACCCATCCTTTAGTTATCTTCTCTCCCTCCCCCTCAGCCCCTATGTAGTCTTGCATTTCTTTAGAATCTGTGTATTCAAAATGGAATATCTGCACGAGTAATTTACCAACGTGTTGCATATTTACATGATGCATCAAGATCGAAGAATTCTCATGCAATATGAAAGGTATACCAGATTCTTATGTGAGATAATATAATAAACTGGAACATCTAAAACCCAATCATATATAAACATCAAAGAATGTAGTTCTCTTAACCCAGTTATCATCATCACCATTCACGTGCTTAACATAATATTGTGGGGGCAGTGAGTCGTGAAATACTTAGTTAGTAGCTCCTCAAATGAGCACAAATGAGAATGCAACCAGTTATACAATGCTAAGGCTCATGACTTGATGGCCAATTACTACTGTATAATAAACATATAAAGGATATGGTTAACTAGCACCTCTGATTTGTTGCTATGATGAAACACAGTTGTGCAAAAAAGTATCTAGCCCTCTTCAGTTTCTTCAATTACAGAAATCTAATTTCTCAAAGTTTCATTTCACACTGGCGACTATGAATTTGATACTAAAGCTGCTATTAATTACTAATATTTCTAGGTTGGAGTTTTTGGATTTTAGCTTGTGCTATTTACTAGCCAACAAGAGCATATTTTTTTTTACTTAATGTTGTTTGGCTAGTTGTTGGACTAATTTGCTAGGCTATCTAAGATCATGTTATACATTATGTATGTATGTATGTAGGGTATCTATGCTAATGAACACCATGCATTCTTTGAAAAGCCTCTGATTAGGTTTGATGAGTATGTTAGCTAGAAGTTGGAAGGCTTCCTTTGAAGATAGGCTTTGGAAATGCTTACTATAAGATTTTCCAAGGCTTTTTGGCTGTGGTTATGGTGTCAAAGAAGTTCTGATACTATTGAAGGTGCTGGACTAGGGCTGCCTTGATTCTGCTGACTATTTTATCTTGATAAGTGCCAGGTTGAGACTTGAGAGGAAAAATTGTAGCTTCTTAGGGTTTAAGGTAGGGATCCACTTTCCTTCTTCATTCTTTGTAGCAGACGCATTCAGTCATTTTATTTAGATTTGTAAACGAAAGAGCTTTATTGAGGGCTATCTTAGTTGGGAAGAACTTTCAGATTGGAAGAGGTCACATTGGTTTCTCTAGAAAGAGAGTAAAGGTTTGGGCAGAGAGAGCAAAGGGGTGTGTTGTCAACTCTGTATCCTGGCCATTGCGTACTTTCTAAGAGATTTTGGAAATTACAATCGGTTTAGCTTTCCAAATGTTTTTCCAAGGATCCTTGTAGGACTTCATTAATTGGTCATTTGGCCACCAATCATAAGGGGAGGGGTGATCTTTGTTGAGGATGACTTTCATCTCCCTTCATGACGTTCTGCCTAATATTGGCTTAGATAGGGACGAGATACAAGCTTATTTTGGGAGGAATTCATCAAATGCCTATTACCTATGAACTCAGCTTAAAAGTAATATATCATATGATCTGTAAACTGATTGTTGAATGAAGATGGTGCATAAGGACTTCATAACTTATATTTGATGTTGTACCACAGGCACGGGACCAGTGGTTGGCACGAGCTGAGTTTTTCTACCGTACATTTTTTTTTTTTTTTTTTACATAACTATTTGTCTGCTCTCTGTTTGGTTTTCATTGTTCTTTGCCCAATTGAAAAAACAATGGATATCACAGCTCTAAGTATATTAGTTCTTTTAAATTTTTCCTTATTTACGACTACCTCGCATCTCCAAAAGAAACTATTCGTTATTACTAATTTATTTCTATTCAATATTTCCTTATTTATGCCATAATGAGTAGCGATATTTTTTTCATTTTCACTATTATTCATGACGAGATGTTTAGGGTTTCGTGACGTAAAAATTGTAGAGATATGGCTTTAGATGGTAGAGTGCTCGCTTTGCATGCGAGTTGTACGGGGATTGATAACCCGCCTCTCCAAAAGAAAGTATTTAATTTGTTATTATATTTTTTCATTTTCACAATTATCGATGCCCCGCATCACCAAACCAAACTATTTGTTATTAATATTTTGATTTTTTTTATTTTCACTATTATTGATGATGGGACATTTAGGGTTTTATGATATAAAAATCATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATACCCCGCATCTCCAAAAGGGAGAAATTATTTTTTTAAGTATGAATTAATTTAACATGTTATGTATAAGGTGGGTACGAGAGAAAAAGAAAAGATGTGTTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTATTAGTTGATATTGGTTCCAACTTTATACATTTGGTCTGTGTTGCGTCACTCTGTGTGGAGAATTATAGTATACTAAGTGCCATCATTTTTTTAACATTCTTTTTAATATTGTATTTCTTGTTTATCTCATTCAGATTTTTGCTCTGAAACCAGCTGTTCACCAGGCATTCCTTAATCATGTTCCCAATAAGGTAGTATTGTAAATAGGAACTAATTTTTCCACTTCCTTCTTGTTTCTTTGAACCTTGTATGTGATGGAGGTAATTTAGTTATTCAAACATACATTATTGTTTTCCTCATAAAAACAGATGTCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCAGAATACCTTCATAGTACAAAAAATTCTATCGCGGCTGCAGCAGAAGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAAATATTGGCAGCTGAAACTCGGAAAAAGGTGGTTTCTTGAAAAATGTCAACCCCCCCCCAATATACTTTGGGTGGTATTTTTCTGATCACTCTTTTCATTACATATTAAATTCTATTTACTTCGTGCATGTTATTCTAGATTCGGCGTGTTGATCCTACATTGGATTTGGAAGCTGATTTAGGAGACGATTACACACACCTTCCAGTATGTTACTTTTTAAATTTAAATTGGTGGCTTGCTTACGTAATTGGCTTATGCAAGTTTTTCTTAAACCTAGGATCATGGAATCTTTCGAGATGGTGGCAAGGAAATAACTGAATCACATAACGAACAATGTAGAAGGACTCTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGAAGAACTATAGGTTAG AAGCCCTCTTTGTTTCTCTTCCGACGTAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCATATACAACTCCATTTCGAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGGCCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTTGAGACTTGAGAGGAAAAATTGTAGCTTCTTAGGGTTTAAGATTTTTGCTCTGAAACCAGCTGTTCACCAGGCATTCCTTAATCATGTTCCCAATAAGATGTCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCAGAATACCTTCATAGTACAAAAAATTCTATCGCGGCTGCAGCAGAAGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAAATATTGGCAGCTGAAACTCGGAAAAAGATTCGGCGTGTTGATCCTACATTGGATTTGGAAGCTGATTTAGGAGACGATTACACACACCTTCCAGATCATGGAATCTTTCGAGATGGTGGCAAGGAAATAACTGAATCACATAACGAACAATGTAGAAGGACTCTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGAAGAACTATAGGTTAG AAGCCCTCTTTGTTTCTCTTCCGACGTAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCATATACAACTCCATTTCGAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGCCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGGCCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTTGAGACTTGAGAGGAAAAATTGTAGCTTCTTAGGGTTTAAGATTTTTGCTCTGAAACCAGCTGTTCACCAGGCATTCCTTAATCATGTTCCCAATAAGATGTCGGAGAAAGACTTTTGGACAAAATATTTTAGAGCAGAATACCTTCATAGTACAAAAAATTCTATCGCGGCTGCAGCAGAAGCTGCTGAAGATGAAGAACTTGCCCTTTTTCTGAAGGACGATGAAATATTGGCAGCTGAAACTCGGAAAAAGATTCGGCGTGTTGATCCTACATTGGATTTGGAAGCTGATTTAGGAGACGATTACACACACCTTCCAGATCATGGAATCTTTCGAGATGGTGGCAAGGAAATAACTGAATCACATAACGAACAATGTAGAAGGACTCTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGAAGAACTATAGGTTAG KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGWLRLERKNCSFLGFKIFALKPAVHQAFLNHVPNKMSEKDFWTKYFRAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRRVDPTLDLEADLGDDYTHLPDHGIFRDGGKEITESHNEQCRRTLSQDLNRQGAVVLEGRTIG Homology
BLAST of Csor.00g267550 vs. ExPASy Swiss-Prot
Match: Q3ECP0 (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 4.7e-52 Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy Swiss-Prot
Match: Q9M322 (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2) HSP 1 Score: 201.8 bits (512), Expect = 9.0e-51 Identity = 100/136 (73.53%), Postives = 115/136 (84.56%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy Swiss-Prot
Match: Q55FP1 (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2h1 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 6.7e-06 Identity = 34/135 (25.19%), Postives = 71/135 (52.59%), Query Frame = 0
BLAST of Csor.00g267550 vs. NCBI nr
Match: KAG6583307.1 (General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 501 bits (1291), Expect = 5.19e-179 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
BLAST of Csor.00g267550 vs. NCBI nr
Match: KAG7029183.1 (putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 271 bits (694), Expect = 5.90e-85 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Csor.00g267550 vs. NCBI nr
Match: XP_022932684.1 (probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita moschata]) HSP 1 Score: 271 bits (694), Expect = 8.18e-84 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Csor.00g267550 vs. NCBI nr
Match: XP_023539703.1 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 269 bits (687), Expect = 4.93e-83 Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Csor.00g267550 vs. NCBI nr
Match: XP_022972269.1 (probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita maxima]) HSP 1 Score: 269 bits (688), Expect = 6.40e-83 Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy TrEMBL
Match: A0A6J1EXP7 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita moschata OX=3662 GN=LOC111439158 PE=3 SV=1) HSP 1 Score: 271 bits (694), Expect = 3.96e-84 Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy TrEMBL
Match: A0A6J1IB04 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita maxima OX=3661 GN=LOC111470852 PE=3 SV=1) HSP 1 Score: 269 bits (688), Expect = 3.10e-83 Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy TrEMBL
Match: A0A0A0L1N5 (BSD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338420 PE=4 SV=1) HSP 1 Score: 260 bits (664), Expect = 4.91e-82 Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy TrEMBL
Match: A0A6J1DT95 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=4 SV=1) HSP 1 Score: 263 bits (673), Expect = 6.30e-82 Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0
BLAST of Csor.00g267550 vs. ExPASy TrEMBL
Match: A0A6J1DNY2 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1) HSP 1 Score: 263 bits (673), Expect = 4.18e-81 Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0
BLAST of Csor.00g267550 vs. TAIR 10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) ) HSP 1 Score: 206.1 bits (523), Expect = 3.4e-53 Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = 0
BLAST of Csor.00g267550 vs. TAIR 10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) ) HSP 1 Score: 201.8 bits (512), Expect = 6.4e-52 Identity = 100/136 (73.53%), Postives = 115/136 (84.56%), Query Frame = 0
BLAST of Csor.00g267550 vs. TAIR 10
Match: AT2G28430.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17 Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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