Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAATGTCGTTCGATCAGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACATGGGGTGGTGGAGCTTTTGTTTTTGGTTGTTTACTCGCAATTTCTACGTTCAAGATGAGCAAGAAGATAATAACCCCTTCTAAAATGGGTCAAGACGACGATTCAAATCTCAATGTTGATGGTTTTAGAGAAAGTAGTCGTTGCGTCAATGAAGGAACTCGACAAAAGGATGAACTGCAACCGTTTCGTCAGTCTTCATCAACGGATCTCATCAGCCATTCATGGTTAGGACTAAAAAACAATATCGATATTGTAATAATGATTCATTTTTATCGTTGCTTATTTGTGATATTATGTTGTAGCCACACAACGTCGCAAATGTTGGTAAAATATTCTCCACTGGAAGACTCTGTCTTTGACGAAACTCAAACCTTAACCACGAAATCCATCCCAGAAAAGAATGACGAAGAAAACGTTGTGGTTAATAATTACGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTAGAAAATGAAGTTGGAGAGAGTTTTTCATCTGAAGAATTTGATGAAGCCACTTGGCTAATTGGGTGGACAGATAAATCATCATCATCCTCATCATCCTCATCATTAGAAGAAGTTTTATCTCAGAAAGCTTTTTCTGGAGAAAATTGA
mRNA sequence
ATGATATCAATGTCGTTCGATCAGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACATGGGGTGGTGGAGCTTTTGTTTTTGGTTGTTTACTCGCAATTTCTACGTTCAAGATGAGCAAGAAGATAATAACCCCTTCTAAAATGGGTCAAGACGACGATTCAAATCTCAATGTTGATGGTTTTAGAGAAAGTAGTCGTTGCGTCAATGAAGGAACTCGACAAAAGGATGAACTGCAACCGTTTCGTCAGTCTTCATCAACGGATCTCATCAGCCATTCATGCCACACAACGTCGCAAATGTTGGTAAAATATTCTCCACTGGAAGACTCTGTCTTTGACGAAACTCAAACCTTAACCACGAAATCCATCCCAGAAAAGAATGACGAAGAAAACGTTGTGGTTAATAATTACGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTAGAAAATGAAGTTGGAGAGAGTTTTTCATCTGAAGAATTTGATGAAGCCACTTGGCTAATTGGGTGGACAGATAAATCATCATCATCCTCATCATCCTCATCATTAGAAGAAGTTTTATCTCAGAAAGCTTTTTCTGGAGAAAATTGA
Coding sequence (CDS)
ATGATATCAATGTCGTTCGATCAGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACATGGGGTGGTGGAGCTTTTGTTTTTGGTTGTTTACTCGCAATTTCTACGTTCAAGATGAGCAAGAAGATAATAACCCCTTCTAAAATGGGTCAAGACGACGATTCAAATCTCAATGTTGATGGTTTTAGAGAAAGTAGTCGTTGCGTCAATGAAGGAACTCGACAAAAGGATGAACTGCAACCGTTTCGTCAGTCTTCATCAACGGATCTCATCAGCCATTCATGCCACACAACGTCGCAAATGTTGGTAAAATATTCTCCACTGGAAGACTCTGTCTTTGACGAAACTCAAACCTTAACCACGAAATCCATCCCAGAAAAGAATGACGAAGAAAACGTTGTGGTTAATAATTACGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTAGAAAATGAAGTTGGAGAGAGTTTTTCATCTGAAGAATTTGATGAAGCCACTTGGCTAATTGGGTGGACAGATAAATCATCATCATCCTCATCATCCTCATCATTAGAAGAAGTTTTATCTCAGAAAGCTTTTTCTGGAGAAAATTGA
Protein sequence
MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQTLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSSSSSSSSSLEEVLSQKAFSGEN
Homology
BLAST of Csor.00g266560 vs. NCBI nr
Match:
KAG6575810.1 (hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 386 bits (991), Expect = 6.12e-135
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL
Sbjct: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
Query: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ
Sbjct: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
Query: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS
Sbjct: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
Query: 181 SSSSSSSLEEVLSQKAFSGEN 201
SSSSSSSLEEVLSQKAFSGEN
Sbjct: 181 SSSSSSSLEEVLSQKAFSGEN 201
BLAST of Csor.00g266560 vs. NCBI nr
Match:
KAG7014352.1 (hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 361 bits (926), Expect = 8.57e-124
Identity = 190/203 (93.60%), Postives = 196/203 (96.55%), Query Frame = 0
Query: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
MISM FDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKM+KKIITPSKMGQDDDSNL
Sbjct: 80 MISMPFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMTKKIITPSKMGQDDDSNL 139
Query: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
NVDGFRES+RCV+EGTRQKDELQPFRQSSST+LISHSCHTTSQMLVKYS +DSVFDETQ
Sbjct: 140 NVDGFRESTRCVDEGTRQKDELQPFRQSSSTNLISHSCHTTSQMLVKYSSSKDSVFDETQ 199
Query: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEV ESFSSEEFDEATWLIGWTDKSS
Sbjct: 200 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVAESFSSEEFDEATWLIGWTDKSS 259
Query: 181 SSS--SSSSLEEVLSQKAFSGEN 201
S S SSSSLEE+LSQKAFSGEN
Sbjct: 260 SYSLTSSSSLEEILSQKAFSGEN 282
BLAST of Csor.00g266560 vs. NCBI nr
Match:
XP_022953717.1 (uncharacterized protein LOC111456164 [Cucurbita moschata])
HSP 1 Score: 345 bits (886), Expect = 7.14e-119
Identity = 185/202 (91.58%), Postives = 189/202 (93.56%), Query Frame = 0
Query: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
MISM FD+EKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSK GQDDDSNL
Sbjct: 1 MISMPFDREKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKTGQDDDSNL 60
Query: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
NVDGFRES+RCV+EGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSV DETQ
Sbjct: 61 NVDGFRESTRCVDEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVIDETQ 120
Query: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
TLTTKSIP+KNDEENVVVNNYEEEEYTDSEKSVENEV ESFSSEEFDEATWL GWTDKSS
Sbjct: 121 TLTTKSIPKKNDEENVVVNNYEEEEYTDSEKSVENEVAESFSSEEFDEATWL-GWTDKSS 180
Query: 181 SSS--SSSSLEEVLSQKAFSGE 200
S S SSSSLEE S FSGE
Sbjct: 181 SYSLTSSSSLEEASSHGVFSGE 201
BLAST of Csor.00g266560 vs. NCBI nr
Match:
XP_023548989.1 (uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 311 bits (797), Expect = 2.58e-105
Identity = 170/202 (84.16%), Postives = 180/202 (89.11%), Query Frame = 0
Query: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
MISM FD+EKLSLSSDSLSRWVTWGGGAFVFGCLLA+STFKM K IITP K G+DDDSNL
Sbjct: 1 MISMPFDREKLSLSSDSLSRWVTWGGGAFVFGCLLAVSTFKMRKNIITPPKRGRDDDSNL 60
Query: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
+V GF ES+RCV+E TRQKDELQ FRQSSSTDLISHS H TSQ+LVKYSP EDSVFDETQ
Sbjct: 61 DV-GFGESTRCVDEETRQKDELQLFRQSSSTDLISHSRHPTSQILVKYSPPEDSVFDETQ 120
Query: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
T+TTKS+ EKNDEENVVVNNY+EEEY DSEKSVENEV ES SSEEFDEATWLIGWTDKSS
Sbjct: 121 TVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENEVAESVSSEEFDEATWLIGWTDKSS 180
Query: 181 SSS--SSSSLEEVLSQKAFSGE 200
S S SSSSLEE LSQ FSGE
Sbjct: 181 SYSLTSSSSLEEALSQGVFSGE 201
BLAST of Csor.00g266560 vs. NCBI nr
Match:
XP_022991241.1 (uncharacterized protein LOC111487956 [Cucurbita maxima])
HSP 1 Score: 303 bits (775), Expect = 6.42e-102
Identity = 162/194 (83.51%), Postives = 171/194 (88.14%), Query Frame = 0
Query: 4 MSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNVD 63
M FD+EKLSL SD LSRWVTWGGG FVF CLL +STFKMSKKIIT K G+DDDSNL+VD
Sbjct: 1 MPFDREKLSLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVD 60
Query: 64 GFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQTLT 123
F ES+RCV+E TRQ+DE Q FRQSSSTDLISHSC+ TSQMLVKYS LEDSV DETQTLT
Sbjct: 61 SFGESTRCVDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLT 120
Query: 124 TKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSSSSS 183
TKSIPEKNDEEN+VVNNYEEEEYTDSEKSVEN V ESFSSEEFDEATWLIGWTDKSSS S
Sbjct: 121 TKSIPEKNDEENIVVNNYEEEEYTDSEKSVENGVAESFSSEEFDEATWLIGWTDKSSSYS 180
Query: 184 --SSSSLEEVLSQK 195
SSSSLEE LSQK
Sbjct: 181 LTSSSSLEEALSQK 194
BLAST of Csor.00g266560 vs. ExPASy TrEMBL
Match:
A0A6J1GP08 (uncharacterized protein LOC111456164 OS=Cucurbita moschata OX=3662 GN=LOC111456164 PE=4 SV=1)
HSP 1 Score: 345 bits (886), Expect = 3.45e-119
Identity = 185/202 (91.58%), Postives = 189/202 (93.56%), Query Frame = 0
Query: 1 MISMSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNL 60
MISM FD+EKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSK GQDDDSNL
Sbjct: 1 MISMPFDREKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKTGQDDDSNL 60
Query: 61 NVDGFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQ 120
NVDGFRES+RCV+EGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSV DETQ
Sbjct: 61 NVDGFRESTRCVDEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVIDETQ 120
Query: 121 TLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSS 180
TLTTKSIP+KNDEENVVVNNYEEEEYTDSEKSVENEV ESFSSEEFDEATWL GWTDKSS
Sbjct: 121 TLTTKSIPKKNDEENVVVNNYEEEEYTDSEKSVENEVAESFSSEEFDEATWL-GWTDKSS 180
Query: 181 SSS--SSSSLEEVLSQKAFSGE 200
S S SSSSLEE S FSGE
Sbjct: 181 SYSLTSSSSLEEASSHGVFSGE 201
BLAST of Csor.00g266560 vs. ExPASy TrEMBL
Match:
A0A6J1JQ73 (uncharacterized protein LOC111487956 OS=Cucurbita maxima OX=3661 GN=LOC111487956 PE=4 SV=1)
HSP 1 Score: 303 bits (775), Expect = 3.11e-102
Identity = 162/194 (83.51%), Postives = 171/194 (88.14%), Query Frame = 0
Query: 4 MSFDQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNVD 63
M FD+EKLSL SD LSRWVTWGGG FVF CLL +STFKMSKKIIT K G+DDDSNL+VD
Sbjct: 1 MPFDREKLSLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVD 60
Query: 64 GFRESSRCVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQTLT 123
F ES+RCV+E TRQ+DE Q FRQSSSTDLISHSC+ TSQMLVKYS LEDSV DETQTLT
Sbjct: 61 SFGESTRCVDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLT 120
Query: 124 TKSIPEKNDEENVVVNNYEEEEYTDSEKSVENEVGESFSSEEFDEATWLIGWTDKSSSSS 183
TKSIPEKNDEEN+VVNNYEEEEYTDSEKSVEN V ESFSSEEFDEATWLIGWTDKSSS S
Sbjct: 121 TKSIPEKNDEENIVVNNYEEEEYTDSEKSVENGVAESFSSEEFDEATWLIGWTDKSSSYS 180
Query: 184 --SSSSLEEVLSQK 195
SSSSLEE LSQK
Sbjct: 181 LTSSSSLEEALSQK 194
BLAST of Csor.00g266560 vs. ExPASy TrEMBL
Match:
A0A0A0K656 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398200 PE=4 SV=1)
HSP 1 Score: 113 bits (282), Expect = 1.73e-27
Identity = 91/189 (48.15%), Postives = 118/189 (62.43%), Query Frame = 0
Query: 12 SLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNV-DGFRESSR 71
++ + + R V WGG AFVFGCLL STFK SKK I+P K ++ SNL+V GF+ESS
Sbjct: 29 TVENTGVLRLVMWGG-AFVFGCLLIASTFKKSKKSISP-KTCREGVSNLDVIGGFKESST 88
Query: 72 CVNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQTLTTKSIPEK 131
++ +K E SSSTD+ISH CHT+S+M +EDSV DE TLTT+ I EK
Sbjct: 89 RDDDDKARKMEGLRLILSSSTDIISHPCHTSSKMSTN--SIEDSV-DENLTLTTEPILEK 148
Query: 132 NDEENVVVNNYEEEEYTDSEKSVE---------NEVGESFSSEEFDEATWLIGWTDKS-- 188
+E+N+V+ YEEEEYT+SE+S E +EV +SF S T L DK+
Sbjct: 149 KEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVPQSFPS------TALFDEDDKNRP 206
BLAST of Csor.00g266560 vs. ExPASy TrEMBL
Match:
A0A1S3BRP4 (uncharacterized protein LOC103492795 OS=Cucumis melo OX=3656 GN=LOC103492795 PE=4 SV=1)
HSP 1 Score: 106 bits (265), Expect = 1.36e-24
Identity = 90/202 (44.55%), Postives = 118/202 (58.42%), Query Frame = 0
Query: 12 SLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNVDGFRESSRC 71
++ ++ + R V WGG AFVFGCLL STFK SKKI T K ++ DS+L+V
Sbjct: 32 TVENNGVLRLVMWGG-AFVFGCLLIASTFKKSKKITTSPKRSREGDSDLDV--------- 91
Query: 72 VNEGTRQKDELQPFRQSSSTDLISHSCHTTSQMLVKYSPLEDSVFDETQTLTTKSIPEKN 131
+ + Q+ E SSSTD+ISH CHT+S+ML +EDS + E +TT+SI EK
Sbjct: 92 IADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLTN--SIEDSEY-ENLPITTESILEKK 151
Query: 132 D-EENVVVNNYEEEEYTDSE-KSVEN---------EVGESFSS----EEFDEATWLIGWT 191
D EEN+VV YEEEEYT+SE S+EN V +SF S +E+D+ T
Sbjct: 152 DQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFPSTALFDEYDKKR--PSST 211
Query: 192 DKSSSSSSSSSLEEVLSQKAFS 198
SSSS SSSSL LS++ S
Sbjct: 212 SSSSSSYSSSSLSSTLSEETSS 218
BLAST of Csor.00g266560 vs. ExPASy TrEMBL
Match:
A0A5A7VKM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00810 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 6.79e-10
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 0
Query: 7 DQEKLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKMGQDDDSNLNVDGFR 66
D E ++ ++ + R V WGG AFVFGCLL STFK SKKI T K ++ DS+L+V
Sbjct: 27 DVELGTVENNGVLRLVMWGG-AFVFGCLLIASTFKKSKKITTSPKRSREGDSDLDV---- 86
Query: 67 ESSRCVNEGTRQKDELQPFRQSSSTDLISHSC 98
+ + Q+ E SSSTD+ISH C
Sbjct: 87 -----IADDKAQEMEGLRLLLSSSTDIISHLC 108
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6575810.1 | 6.12e-135 | 100.00 | hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7014352.1 | 8.57e-124 | 93.60 | hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022953717.1 | 7.14e-119 | 91.58 | uncharacterized protein LOC111456164 [Cucurbita moschata] | [more] |
XP_023548989.1 | 2.58e-105 | 84.16 | uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo] | [more] |
XP_022991241.1 | 6.42e-102 | 83.51 | uncharacterized protein LOC111487956 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1GP08 | 3.45e-119 | 91.58 | uncharacterized protein LOC111456164 OS=Cucurbita moschata OX=3662 GN=LOC1114561... | [more] |
A0A6J1JQ73 | 3.11e-102 | 83.51 | uncharacterized protein LOC111487956 OS=Cucurbita maxima OX=3661 GN=LOC111487956... | [more] |
A0A0A0K656 | 1.73e-27 | 48.15 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398200 PE=4 SV=1 | [more] |
A0A1S3BRP4 | 1.36e-24 | 44.55 | uncharacterized protein LOC103492795 OS=Cucumis melo OX=3656 GN=LOC103492795 PE=... | [more] |
A0A5A7VKM4 | 6.79e-10 | 43.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |