Csor.00g263640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g263640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	Csor_Chr11: 12725288 .. 12725860 (+)
RNA-Seq Expression	Csor.00g263640
Synteny	Csor.00g263640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCATCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAGGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCTGCCGTCGTCGTCGCTCCCGGATCTGCCGGAGGCGAGGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTTATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

mRNA sequence

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCATCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAGGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCTGCCGTCGTCGTCGCTCCCGGATCTGCCGGAGGCGAGGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTTATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

Coding sequence (CDS)

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCATCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAGGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCTGCCGTCGTCGTCGCTCCCGGATCTGCCGGAGGCGAGGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTTATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

Protein sequence

MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.7e-50
Identity = 126/189 (66.67%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLST +L+ PS S+++        PK K+L FP        + R   LRPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTATSTHASIPFPK-KTLEFPIRTPKLQ-NRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQDKLGV+AA+FAPAAVV APG+A   +A A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.8e-50
Identity = 126/189 (66.67%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLST +L+ PS S++S        PK K+L FP      +   R   LRPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTASSTHASIPFPK-KALEFPIRTPKLH-HRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQDKLGV+AA+FAPAAV  APG+A   +A A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-49
Identity = 121/193 (62.69%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSL---RLVHLRPLSAT 60
           MA+T + A+L  PS +S    S F   P  + L FP   +++ +SL   R   LRP++A 
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHP--QPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  AVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAV 120
             PEK+ ++G  +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA V APG+    DAA AV
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPA--DAAPAV 120

Query: 121 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDAK
Sbjct: 121 EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 180

Query: 181 KQLEEAGAKIAIV 191
           KQLE+AGAK++IV
Sbjct: 181 KQLEDAGAKVSIV 189

[Close]

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-46
Identity = 122/194 (62.89%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFP--SKFSHSP-KSKSLHFPSSL---SSSNLSLRLVHLRPLS 61
           ++TLS A+    +  SSS+P  +  +H P ++ ++ FPS     SSS L+ R  HLRP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  ATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAA 121
           A   PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA  VA  + GG  AAA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAA 122

Query: 122 AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-46
Identity = 125/191 (65.45%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSK--SLHFPSSLSSSNLSLRLVHLRPLSATA 60
           MAST  T S+     SSS   S  +H   SK  ++ FP  LSSS+ S R ++LRP+SA  
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVE 120
            PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA  VA  + GG  AAA VE
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 121 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 180

Query: 181 QLEEAGAKIAI 190
            LEEAGAK++I
Sbjct: 181 TLEEAGAKVSI 186

[Close]

BLAST of Csor.00g263640 vs. NCBI nr
Match: KAG6588957.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333 bits (855), Expect = 1.43e-114
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. NCBI nr
Match: KAG7022725.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333 bits (854), Expect = 2.04e-114
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR+LVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARVLVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. NCBI nr
Match: XP_022928154.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 331 bits (849), Expect = 1.18e-113
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTA LQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTAFLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. NCBI nr
Match: XP_022989170.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 326 bits (835), Expect = 1.60e-111
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. NCBI nr
Match: XP_023529834.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (830), Expect = 9.27e-111
Identity = 185/190 (97.37%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL
Match: A0A6J1EK20 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435060 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 5.70e-114
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTA LQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTAFLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL
Match: A0A6J1JLN3 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486322 PE=3 SV=1)

HSP 1 Score: 326 bits (835), Expect = 7.76e-112
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 290 bits (741), Expect = 1.63e-97
Identity = 166/190 (87.37%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           M+S LSTASL+FPSCSSSS+PS FSHS +S S+ FP S SS+NLSLR VH RPLSA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR LVDYLQ+KLGVSAAAFAPAAVVVAPG+A G D AAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIE+VPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL
Match: A0A6J1DD25 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019918 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.73e-97
Identity = 169/191 (88.48%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASL+ PSCSSSS+PS FS SP+  SLHFP S SS+NLS RLVHLRP+SA A P
Sbjct: 1   MASTLSTASLRSPSCSSSSYPSNFSQSPRPFSLHFPFSPSSNNLSHRLVHLRPVSAAAAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGS-AGGEDAAAAVEE 120
           EKV EIGDVISKLTLEEARILVDYLQ+KLGVSAAAFAPAAV VAPG+ AGG+ AAAAVEE
Sbjct: 61  EKVVEIGDVISKLTLEEARILVDYLQEKLGVSAAAFAPAAVAVAPGAGAGGDVAAAAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 190
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 5.43e-96
Identity = 164/190 (86.32%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           M+S LSTASL+ PSCSSSS+PS FSHS +S S+ FP S SS+NLSLR VH RPLSA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR LVDYLQ+KLGVSAAAFAPAAV VAPG+A G D AAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIE+VPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Csor.00g263640 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-47
Identity = 122/194 (62.89%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFP--SKFSHSP-KSKSLHFPSSL---SSSNLSLRLVHLRPLS 61
           ++TLS A+    +  SSS+P  +  +H P ++ ++ FPS     SSS L+ R  HLRP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  ATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAA 121
           A   PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA  VA  + GG  AAA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAA 122

Query: 122 AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of Csor.00g263640 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-47
Identity = 125/191 (65.45%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSK--SLHFPSSLSSSNLSLRLVHLRPLSATA 60
           MAST  T S+     SSS   S  +H   SK  ++ FP  LSSS+ S R ++LRP+SA  
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVE 120
            PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA  VA  + GG  AAA VE
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 121 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 180

Query: 181 QLEEAGAKIAI 190
            LEEAGAK++I
Sbjct: 181 TLEEAGAKVSI 186

[Close]

BLAST of Csor.00g263640 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 106/192 (55.21%), Postives = 131/192 (68.23%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSL---SSSNLSLRLVHLRPLSATA 61
           A+TLS A+    S  SS   S      +  S+ FP S    SSS LS R ++L P+SA  
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVE 121
            P+K+ +IG  IS LTLEE+RILVDY+QDK GVS    APAA  + P    G  A A+VE
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNG-GATASVE 122

Query: 122 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 181
            +T FDVVI DVP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K 
Sbjct: 123 RQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKT 182

Query: 182 QLEEAGAKIAIV 191
           QLEEAGAK++IV
Sbjct: 183 QLEEAGAKVSIV 193

[Close]

BLAST of Csor.00g263640 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-16
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 41  SSNLSLRLVHLRPLSATAV-PEKVTEIGDVISKLTLEEARILVDYLQDKLGVS----AAA 100
           SS++ L  +  R  S+ A   E V++I + +S LTL E   L + L+ KL +S     AA
Sbjct: 22  SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAA 81

Query: 101 FAPAAVVVAPG---SAGGEDAAAAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKE 160
             P   +   G   SAGGE      E KT FDV+++   + ++I VIK VR +T+L LKE
Sbjct: 82  MMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKE 141

Query: 161 AKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 190
           AK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 142 AKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Csor.00g263640 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 64.7 bits (156), Expect = 9.2e-11
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAA----- 120
           ++V  + D IS LTL E   L   +  K G++     P   V+ PG+ GG          
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTE---LPTVAVMKPGAGGGVGVGGGGGMV 128

Query: 121 --------AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG 180
                   A  EKT F++ +E   ++A+I +IK +R+ T L LKEAK L+E  P   K G
Sbjct: 129 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAG 188

Query: 181 ISKEEAEDAKKQLEEAGAKIAI 190
           +SKEE E   ++L+  GAK+ +
Sbjct: 189 LSKEEGEKILEKLKALGAKVVL 207

The following BLAST results are available for this feature:

BLAST of Csor.00g263640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	5.7e-50	66.67	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	9.8e-50	66.67	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	4.9e-49	62.69	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36210	2.3e-46	62.89	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	2.9e-46	65.45	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Csor.00g263640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588957.1	1.43e-114	100.00	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
KAG7022725.1	2.04e-114	99.47	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022928154.1	1.18e-113	99.47	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]
XP_022989170.1	1.60e-111	97.89	50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima]	[more]
XP_023529834.1	9.27e-111	97.37	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g263640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EK20	5.70e-114	99.47	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JLN3	7.76e-112	97.89	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F403	1.63e-97	87.37	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DD25	9.73e-97	88.48	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1J1D9	5.43e-96	86.32	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Csor.00g263640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	1.6e-47	62.89	ribosomal protein L12-A	[more]
AT3G27850.1	2.1e-47	65.45	ribosomal protein L12-C	[more]
AT3G27840.1	1.2e-39	55.21	ribosomal protein L12-B	[more]
AT4G36420.1	7.3e-16	40.13	Ribosomal protein L12 family protein	[more]
AT1G70190.1	9.2e-11	34.51	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..189
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 62..118 e-value: 2.9E-13 score: 51.6
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..125
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 64..189 e-value: 4.5E-32 score: 109.1
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..189
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..190 score: 22.621347
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..189 e-value: 5.38074E-40 score: 130.738
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 123..189 e-value: 4.1E-24 score: 84.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..189 e-value: 9.0E-26 score: 91.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 118..189
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 1.0E-12 score: 47.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g263640.m01	Csor.00g263640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome