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Csor.00g263400 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTACGATTACCTCTTCAAGTACATCATCATCGGCGATACGGGTTTGTTCAGAATCTTTGTTTTGATTGTGTTTATCTTCTGGGTTTATGAGGATTTGCTTTGAATTTGGGGTTTTTGTTTGGATTACAGGTGTTGGGAAATCTTGCTTGTTGTTGCAATTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTAACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTGTTAAGCTTCAGATATGGGATACTGTGAGTTTTGATTCTTTGTACTCTTTATCTTTGCATAGTTTAGTTTCTTTTTATATGTGTAACGAGAGGAATTGTATAAGGGAATTAAAGAAATTCAGGAAGTTACATGAACTGGAAGATTCTATTGTAAGTGAGGAATTGTACCAAGAACTTTAAGCTGATAGGATTAGATCCTGAGAAACCCCTCCAGAAACTCATGATATCAATCGATTTCAAGATGGCTCATGTTTGGATCATTAGGGGAAAGTCAGTTTGCTAAGGCTATTTGTGACAGATTCTTGGAGACTTTTAGTGACTGATTCTTGGAGGCTTGTGGAGAGTTCTTGGGAGTAGGTTTGGTCTCTGGCTAGTTCATCTTTTTGTTCTTTGTGCTTAGCTCCTCTTGCCTTGGTTTCTTCTTTTTATCTCTATGGAAGTTGTTTTCTAGAAGAAAATGATTTGACAATGGATTATGAGATATTTTCTTATTAAGAATCGGTATTTTCGAGCCACTCTTTAGTTTACTTTCTTACCTTTCTTATGTAGGTTGAGATTGGCTTAATGTAGGTTGAGATTGGCAAATTGACTGCGAGGGGGTCGCTAGAGCCAACATATAATTATACCTCAGTTAACTAACTGGAATCCTTATAATGTTCGAATAATTGTTTTCTAGAAGTTGTGTTCTCATGGATGTTATGTTTTCAACTTTAGAATTAATAGAGTTCTTCCGGTATCTGTGGATTAACGTTCTCATATAAATCATTTAATCCATTCTTTAAAATAATCTTGGAAACAGAAATGGCAAGCCATTAGCAGACATGTTTTAAAACAACAGTGACAGTAGATTCTTTTCTGGTAATGGTCAAAACAGATTATGTTTATCTTTCTTGAAAATCTGTGAGACATTGGTTGGAGAGGGGAAGGAAGCCTATAAGGGTGTGGAAACCTCTCCGTAGTAGACGTGTTTTAGAACTCTGAGGTTGATGGTGATCTGTAACGACATTTTACTTTATTGCAGGCTGGGCAAGAATCATTCAGATCAATCACAAGATCTTACTACAGAGGAGCAGCTGGTGCTCTCTTAGTTTATGACATTACCAGGTGAGTTTGTGAATGGATGAATGGATAGATGGATGAACTTTTACTTCTTTTATCATCTTAAAACTTTCCCTTCTTTCTAATTGTTGACTATATTTTATTGCACTTGGGATTTTTGCATCACAACCTTCTGATCTTGAGAAATCTGCTAGAACGGATTTGATTTATTTTCTTTTTGAGAAATCTGAGATGAGCCCATGATTCTGTTGCCAGGAGGGAGACATTCAATCACTTGGCAAGCTGGTTGGAGGACGCTCGGCAACATGCAAATCCCAACATGTCAATTATGCTTGTAGGGAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGGCTCTTATTCTTAGAGGCATCTGCTAGAACGGCTCAAAATGTTGAGGAGGTCAGTTTTGTTTATTTGACATGTGCCTCTTCTAAAAAGGCTAGTTGTCTCTTAGATTCTCTCTCAGTTCATCTTGGTGTTTGATTGTACAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGGTAAGTTGGGTCTATCATTTGTGGTAAAGAAATGCAGATTATTTTCCTGTCAATGCTACCTACCCATTCTGGTTTGCGATATAGAACCTCTAACGAAAGAAAAAGATAGCTCTACCGGTTTTTTTAATATAAGAAACAATTCGATTGAGGTCTGAAATTACCAAAGGGATGAAACGTCGAGAGTACTACAAGAAGCTTGCCCAGTTAGATAAAAGGGTACCATAACTATAAGAAGAAAAATGATAGTAGGGAGCACGATATATAACCGAGTTGAGGAGTTCGTCCAAAGGAAGCTCCTTGTCCAAAAAGACTCTTTGGTGCCTGTGAGATCTCATATCAGTTGGGGAAGAGAATGAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGTAGACGTGTTTTAAAAACCTTGAAGGGGGGAAGCCTTAAAGGGAAATCCCAAAAATGACAATATCTGTTAGCGGTGGGCTTAGGCTGTTACAATTTCTTTCTTTCCAAAGATTCCAAAGAAAAATCCGTGATGATAGGAATCCATAGCATAGCCTTTTCATTACTAAAAGGGTGGCCTGATAAGGCGCTCCCATCAAAGGAATTTGAGCTTTTTGGGTATTTATCTTCCCAAATGGCCTTGACTAAGGTGGTCTCCAATAATTTCCTACTATCTCCCAAATCATTTCAGAGCGTTGGGTCGAGAAAATGCCATTATAGCTAGGTAGCCATCTTTACTCTCCAAGTCAGGAGAACTAATCGGATCAAGGATATTGATGCTGCTAATGAGATTACTTGTGTGATATTATTGTATTCTTGCGAGATCCCACACCGGTTGGAGAGGAGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTTCTTAGTAGACGGTTTTTAAAAACCTTGAGCGGAAGCCCGTAAGGGAAAGTCTAAAAACAACAATATCGGCTAGTGGTGGGCTTGGGCTATTACAGTTCCTGTGTTCGTTCATTTATGAAAGTATGTTTTTCCATAAAATAATATCTGTTTCTCTAAGCTTAAACTACTTTTAATAGCGTAGCTTCTATTCTAAAAACGTAATGCATTATGACCATGAAGAACAGTAGAATTTTTACGATATTTTGTGGGTTCTTGCAGTCGTCTGGGATCAAGGTCGGTTACGGGCGCCCTCAAGGGCCATCAGGGGCAAGGGATGGAGCAGTTGCACAGAGAGGTGGATGCTGTAGCTAA ATGTCGTACGATTACCTCTTCAAGTACATCATCATCGGCGATACGGGTGTTGGGAAATCTTGCTTGTTGTTGCAATTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTAACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTGTTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATCACAAGATCTTACTACAGAGGAGCAGCTGGTGCTCTCTTAGTTTATGACATTACCAGGAGGGAGACATTCAATCACTTGGCAAGCTGGTTGGAGGACGCTCGGCAACATGCAAATCCCAACATGTCAATTATGCTTGTAGGGAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGGCTCTTATTCTTAGAGGCATCTGCTAGAACGGCTCAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCGTCTGGGATCAAGGTCGGTTACGGGCGCCCTCAAGGGCCATCAGGGGCAAGGGATGGAGCAGTTGCACAGAGAGGTGGATGCTGTAGCTAA ATGTCGTACGATTACCTCTTCAAGTACATCATCATCGGCGATACGGGTGTTGGGAAATCTTGCTTGTTGTTGCAATTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTAACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTGTTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATCACAAGATCTTACTACAGAGGAGCAGCTGGTGCTCTCTTAGTTTATGACATTACCAGGAGGGAGACATTCAATCACTTGGCAAGCTGGTTGGAGGACGCTCGGCAACATGCAAATCCCAACATGTCAATTATGCTTGTAGGGAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGGCTCTTATTCTTAGAGGCATCTGCTAGAACGGCTCAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCGTCTGGGATCAAGGTCGGTTACGGGCGCCCTCAAGGGCCATCAGGGGCAAGGGATGGAGCAGTTGCACAGAGAGGTGGATGCTGTAGCTAA MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNESSGIKVGYGRPQGPSGARDGAVAQRGGCCS Homology
BLAST of Csor.00g263400 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.2e-109 Identity = 192/210 (91.43%), Postives = 204/210 (97.14%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 2.5e-102 Identity = 182/210 (86.67%), Postives = 195/210 (92.86%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 1.8e-97 Identity = 177/211 (83.89%), Postives = 191/211 (90.52%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2) HSP 1 Score: 354.4 bits (908), Expect = 9.1e-97 Identity = 177/211 (83.89%), Postives = 191/211 (90.52%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 7.2e-94 Identity = 172/213 (80.75%), Postives = 186/213 (87.32%), Query Frame = 0
BLAST of Csor.00g263400 vs. NCBI nr
Match: XP_022928185.1 (ras-related protein RABB1b [Cucurbita moschata] >KAG6588933.1 Ras-related protein RABB1b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022702.1 Ras-related protein RABB1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 424 bits (1091), Expect = 7.43e-150 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. NCBI nr
Match: XP_022989237.1 (ras-related protein RABB1b [Cucurbita maxima]) HSP 1 Score: 423 bits (1087), Expect = 3.03e-149 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Csor.00g263400 vs. NCBI nr
Match: XP_008450002.1 (PREDICTED: ras-related protein RABB1b [Cucumis melo] >KAA0037848.1 ras-related protein RABB1b [Cucumis melo var. makuwa] >TYK27226.1 ras-related protein RABB1b [Cucumis melo var. makuwa]) HSP 1 Score: 422 bits (1086), Expect = 4.30e-149 Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. NCBI nr
Match: XP_023531811.1 (ras-related protein RABB1b [Cucurbita pepo subsp. pepo]) HSP 1 Score: 422 bits (1084), Expect = 8.68e-149 Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Csor.00g263400 vs. NCBI nr
Match: XP_038894253.1 (ras-related protein RABB1b [Benincasa hispida]) HSP 1 Score: 421 bits (1082), Expect = 1.75e-148 Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy TrEMBL
Match: A0A6J1EQZ0 (ras-related protein RABB1b OS=Cucurbita moschata OX=3662 GN=LOC111435082 PE=4 SV=1) HSP 1 Score: 424 bits (1091), Expect = 3.60e-150 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy TrEMBL
Match: A0A6J1JF93 (ras-related protein RABB1b OS=Cucurbita maxima OX=3661 GN=LOC111486377 PE=4 SV=1) HSP 1 Score: 423 bits (1087), Expect = 1.47e-149 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy TrEMBL
Match: A0A5A7T4U5 (Ras-related protein RABB1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001040 PE=4 SV=1) HSP 1 Score: 422 bits (1086), Expect = 2.08e-149 Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy TrEMBL
Match: A0A1S3BMP4 (ras-related protein RABB1b OS=Cucumis melo OX=3656 GN=LOC103491719 PE=4 SV=1) HSP 1 Score: 422 bits (1086), Expect = 2.08e-149 Identity = 209/210 (99.52%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. ExPASy TrEMBL
Match: A0A6A1VG46 (Ras-related protein RABB1b OS=Morella rubra OX=262757 GN=CJ030_MR6G022436 PE=4 SV=1) HSP 1 Score: 419 bits (1076), Expect = 6.97e-148 Identity = 205/210 (97.62%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Csor.00g263400 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 ) HSP 1 Score: 397.1 bits (1019), Expect = 8.7e-111 Identity = 192/210 (91.43%), Postives = 204/210 (97.14%), Query Frame = 0
BLAST of Csor.00g263400 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C ) HSP 1 Score: 372.9 bits (956), Expect = 1.8e-103 Identity = 182/210 (86.67%), Postives = 195/210 (92.86%), Query Frame = 0
BLAST of Csor.00g263400 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A ) HSP 1 Score: 302.8 bits (774), Expect = 2.2e-82 Identity = 150/211 (71.09%), Postives = 174/211 (82.46%), Query Frame = 0
BLAST of Csor.00g263400 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 ) HSP 1 Score: 300.4 bits (768), Expect = 1.1e-81 Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 0
BLAST of Csor.00g263400 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C ) HSP 1 Score: 198.0 bits (502), Expect = 7.7e-51 Identity = 99/214 (46.26%), Postives = 138/214 (64.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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