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Csor.00g262840 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCAACATCCACTCGCCAAAAATTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCTCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTTGACTTGTTTCGTATCAGACGGAACTGCATACAGTCAGTTCAAGTTTTGAATTAATTGTCGTCCGTAGAATAACTCTGTAATCTGTTTGTGCTTCATTTTTTCTCACGACGACTCAATTTTTTCCGTAGTTCGCTTAAATCTATTGTTTCACCAAGGTGAATTCATAGAAATGGCTTTTGAATTTTCCTCTAGTGAACTATGATTCAGTTAATTGGTTTATGAATGTTGTCTCTGCTTTAGGATAGTGCAATTCATTGGTCGGTCAGTTCACTTGGAACTGGATTGTCTAGTTTGCTAGAAATCACGATTGACAGATAAAACAGAGCCTTAGTTAGTTTAATCCGAATACTGCTGCAAATCTGTGCAATTTAGTGAAACGCGCTTGTCTGAAGTTGGAGACTGGAGTTAAATTGATATCTAATTCAGTCAATCATTTTAAGAATAAGAATGTAAAGGATGAATTCTCTAGTTTGAGCTTCATCTCTCTTTACTCAGTGATTTGTTTTGGCCTTTGTTAGATGTGGAGGCAAAGGCGACTACCGATGATCTGTCTCTTGAAGTGAAGGTTAGTGAACAGAAAGAATGGAAGAAACATAAGTTTTAAGCCTCAGAGAATCCTTTTTGTTCTTAATTTTTGCTCTATTTAAGTCTTGTTTCGTGATGGTGCGTTAAGATTGGTTTTAGTCGGCTTCATTTTTTTTGTAGCTTGAAGTGTTTATTTACACTGTTCAGTTTGAATTCAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGTAAGCATTGATCTTCTATTTTGGGGAAATTTATATTTATAACAAACTGATGTATGTAAAAATTTCATGTAGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGGTACTCCTTGAGGTACTTTTTTCTCATTTTGGCATGTGGTATTGCTCTCCTTCCTAACATTGCTAATACTGAATTTCCATATGTCATATGCAAATGCATATAGTGATAGTTTGGTTGTGGAAGCTAGTGGTGGTGTGGCTGCTGCCAAACTTTATAAGGAGAGTGATGAAAATGGTTTCCGGGCATCTGAGGTAATTAACTCATGTTTATTGGTGATGCTTTGTGTTGGGAATTTAGGGAATGATCATGGGTTTATAATCAAAAAATACTATCTCCATTGGTATGAGGCCTCTTGGGGAAGGCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAATCATGTTCATCTAACACTTTGTTACGTCCGATTAGAAATTATTTGGTCAAAACTGGTGGTTTACTAGTTCTTTATTGAGCTACATTTTTTTTTTTCTTTTTCATTTTTGGTTACTGGTGATTGGTTAATGAGCGTTCACTTTTTAGTGATCGAGCCTGTGAAAACATTGAGGCTCATGTACTTGAGGACTCTTATTGAACGTCCTTGGGTAATGCTTAACAAGACACTTTCTTTAAATTCTCTATAAAATCTAGTAACATGTACCTGACATGCCATTTGTTGCAGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGTATGAATGTTCAATGCTTAATTTTTCTGGTTTAGTGCACCCATTTTTCCATGAAACTTTTCTTTGTAGTTCCCTAAAGCAATTTTCAGTATTATTATGTTCATGTTGACATTTGATAAACATTTTACATGCAGGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATCGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTAATTAAGGGTTTGTTTGGACTTGAAAGTGGTTTACGAAATAGTTTTACACCTTCTTTAACCCATTTTTGAGAACTGTAAACTAGTGGTTTTCTAAAATTTCCATTTACAGAGTTATGAATTTGAATAGAAAACTAATTTAATTTTTTCCAAAACAACACGTCATCCATAAAAACAATTTTCAAATTTCAAAGAACATGTGATGTCCCACGTTGATTGGGGAGGAGAACAAAACACCCTTTATAAGGGAGTTGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCGAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGCTGTGGGCCTGGGTCGTTACAAAATGGTATCAGAGCCAGACACCAGACGATATGTCAGTCTTCTCGCCCTTCCCCAAAGTGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGTTGGCCCCCAAAGGGGTGGACTTGGTGGGGGTCACACATCAAATTGGAGAAAGGAACGAATGCCAGCGAGAACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAAACACCCTTTATAAGGGAGTGGAAACCTTCCCCTAGCAAACGTGTTTTAAAGCCGCGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGAATAATATCTACTAGCGGTGAGCCTGGGTCATTACAGAACAGCTATGCCAACATGTTTTCATGAAATTATTGTTCCAGAATCTTCTAAATCTGCTTGATTTTTCTACTTAGGTTTTGAATTCACCTTTCTTGGTGCTTTTTTTTTCTTTTTTTTCATGATTTGAAACCATAGAAATCTTTCATTCCTTTTGCTATTCTTGTGTATAACTCAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAGTAAGTGATTCTGATCCTTCCCACACTTGCAATATGATCCAGGATTTCATGCATATTCTGGCTTCTAACATTTCCATGCCTCACAGAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGTGTGAATCCTTGCACTACTTATACTTGCCCCCATTAACTACTGAGTCGGAATTGGAATCATAATTTTCATAAAAAAAAGTTTTACCTTCCAGCTTTATATACTATAATCTAGTTATGCTTTAGTTTTTAAACTTTTACGTTTGTCTAAAACGTCCTTCAATTTTAAAAATGTCAAAAAGAAGGGAGTTTTTAATATAGTGTCTTATATGTTACTAAAACATTAAAAAAATGGTCTATTGTCTAGTAGTATCTTATGCTTTCAATTTTGTGTTTAATAGGTTTGTAAATTAAAAAAAAAAAAAAAAAAATACAAATACCTAGTATATACTTTTAAATTTAAAAACCCAATTGAACCCAAAATTTAAAGTTAATAAACCTAATGTTTAGCCTCGTATAAATAACCATTTGGTTTTTTTATTTTTGTTTTTGAAAACTATGCTTCTTTTAATTATTACCATAGTTCTCATCTTTGGTACGAAAACATTTGAATTGAGAGTAATTTTTGAAGAACTATTTTGTTATTGTTTTCACTTGGTTTAAATAAAACATGGAATACTAGAAGACTATGATTTATAATCTTTCAACCTTAAAATTTATTTTGGTTCAAATCCCAGAGAATTTTGGAATGTTATAGCTACTCTAACCAGTAAGTTGCACTGCATCAATGACTTATTATGTTGGGATGTGTAACAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAA ATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCAACATCCACTCGCCAAAAATTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCTCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTTGACTTGTTTCGTATCAGACGGAACTGCATACAATGTGGAGGCAAAGGCGACTACCGATGATCTGTCTCTTGAAGTGAAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGTGATAGTTTGGTTGTGGAAGCTAGTGGTGGTGTGGCTGCTGCCAAACTTTATAAGGAGAGTGATGAAAATGGTTTCCGGGCATCTGAGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATCGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAA ATGGCGATGAAAACCACCGTTTCTCCGCTTACTGATTTCCATTTCAACATCCACTCGCCAAAAATTCAACCAATATCTCTGAATTCGAGCTACGCCTTGCTCCTGCCCTTCTCAGTTCGTTGTAATCAAAACCTCCCCCTTCATTTTCGCCGACGATTTCTGCACTCTTCTGCCATTCAGCGCCGTCGATCTCTGCCGTTGACTTGTTTCGTATCAGACGGAACTGCATACAATGTGGAGGCAAAGGCGACTACCGATGATCTGTCTCTTGAAGTGAAGAAGAAAGCAAAGGATGTAGCTCCTGAATTGAAAGGAACTTCCATCTTTCTCGTGGGGATCAACAGCTCCCTAAAAACTAAGTTGGGGAAACTCCTTGCTGATATGTTGAGATATTATTACTTTGACAGTGATAGTTTGGTTGTGGAAGCTAGTGGTGGTGTGGCTGCTGCCAAACTTTATAAGGAGAGTGATGAAAATGGTTTCCGGGCATCTGAGACTGAAGTGTTAAAACAATTATCTTCAATGGGTCGACTAGTTGTATGTGCTGGAAATGGTGCTGTTCGGAGCTCTACTAATCTGGCGCTTTTGAGGCATGGCATAACGTTATGGATTGATATACCCCTACAGATAATAGCAGAGGAATTTGCTGAAGATCGTGGGCAACTTCCAGTATTTGATATATCTACTTCTGGATCTTATTCAGAGGTGCTGGGTCAAATAACTTCCCTATACCAAGAAATAAAAGTAGGATATGCCACGGCTGATGCTTCAATATCACTCCAAAAACTAGCAAGTACATTAGGATACGATGACTTCAATGCTGTTACAACCGAAGACATGGCTTTGGAGGCTCTGAAGGAGATAGAAAAGCTGATAAGAATGAAGAAGATGATGGAAGCAGCAGCAAAACCTTTTTAA MAMKTTVSPLTDFHFNIHSPKIQPISLNSSYALLLPFSVRCNQNLPLHFRRRFLHSSAIQRRRSLPLTCFVSDGTAYNVEAKATTDDLSLEVKKKAKDVAPELKGTSIFLVGINSSLKTKLGKLLADMLRYYYFDSDSLVVEASGGVAAAKLYKESDENGFRASETEVLKQLSSMGRLVVCAGNGAVRSSTNLALLRHGITLWIDIPLQIIAEEFAEDRGQLPVFDISTSGSYSEVLGQITSLYQEIKVGYATADASISLQKLASTLGYDDFNAVTTEDMALEALKEIEKLIRMKKMMEAAAKPF Homology
BLAST of Csor.00g262840 vs. ExPASy Swiss-Prot
Match: Q9LW20 (Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL1 PE=2 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 9.5e-63 Identity = 129/214 (60.28%), Postives = 164/214 (76.64%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy Swiss-Prot
Match: Q5NTH3 (Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK2 PE=1 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 5.4e-34 Identity = 79/207 (38.16%), Postives = 130/207 (62.80%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy Swiss-Prot
Match: Q7X7H9 (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2) HSP 1 Score: 143.3 bits (360), Expect = 4.6e-33 Identity = 80/213 (37.56%), Postives = 129/213 (60.56%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy Swiss-Prot
Match: Q5NTH4 (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 3.0e-32 Identity = 79/237 (33.33%), Postives = 139/237 (58.65%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy Swiss-Prot
Match: Q9SJ05 (Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV=2) HSP 1 Score: 136.0 bits (341), Expect = 7.3e-31 Identity = 70/209 (33.49%), Postives = 126/209 (60.29%), Query Frame = 0
BLAST of Csor.00g262840 vs. NCBI nr
Match: KAG6588877.1 (putative inactive shikimate kinase like 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 587 bits (1514), Expect = 3.43e-211 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
BLAST of Csor.00g262840 vs. NCBI nr
Match: XP_022928568.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 582 bits (1501), Expect = 3.28e-209 Identity = 303/305 (99.34%), Postives = 303/305 (99.34%), Query Frame = 0
BLAST of Csor.00g262840 vs. NCBI nr
Match: XP_022928567.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 577 bits (1486), Expect = 7.36e-207 Identity = 303/309 (98.06%), Postives = 303/309 (98.06%), Query Frame = 0
BLAST of Csor.00g262840 vs. NCBI nr
Match: XP_023529266.1 (probable inactive shikimate kinase like 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 574 bits (1479), Expect = 7.41e-206 Identity = 299/305 (98.03%), Postives = 299/305 (98.03%), Query Frame = 0
BLAST of Csor.00g262840 vs. NCBI nr
Match: XP_022989695.1 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 569 bits (1466), Expect = 7.10e-204 Identity = 296/305 (97.05%), Postives = 298/305 (97.70%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy TrEMBL
Match: A0A6J1EPF2 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435335 PE=3 SV=1) HSP 1 Score: 582 bits (1501), Expect = 1.59e-209 Identity = 303/305 (99.34%), Postives = 303/305 (99.34%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy TrEMBL
Match: A0A6J1EKB2 (probable inactive shikimate kinase like 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435335 PE=3 SV=1) HSP 1 Score: 577 bits (1486), Expect = 3.56e-207 Identity = 303/309 (98.06%), Postives = 303/309 (98.06%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy TrEMBL
Match: A0A6J1JN35 (probable inactive shikimate kinase like 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486699 PE=3 SV=1) HSP 1 Score: 569 bits (1466), Expect = 3.44e-204 Identity = 296/305 (97.05%), Postives = 298/305 (97.70%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy TrEMBL
Match: A0A6J1JQ24 (probable inactive shikimate kinase like 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486699 PE=4 SV=1) HSP 1 Score: 563 bits (1451), Expect = 7.70e-202 Identity = 296/309 (95.79%), Postives = 298/309 (96.44%), Query Frame = 0
BLAST of Csor.00g262840 vs. ExPASy TrEMBL
Match: A0A1S3BNN4 (probable inactive shikimate kinase like 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491834 PE=3 SV=1) HSP 1 Score: 479 bits (1232), Expect = 1.64e-168 Identity = 248/305 (81.31%), Postives = 274/305 (89.84%), Query Frame = 0
BLAST of Csor.00g262840 vs. TAIR 10
Match: AT3G26900.1 (shikimate kinase like 1 ) HSP 1 Score: 241.9 bits (616), Expect = 6.7e-64 Identity = 129/214 (60.28%), Postives = 164/214 (76.64%), Query Frame = 0
BLAST of Csor.00g262840 vs. TAIR 10
Match: AT3G26900.2 (shikimate kinase like 1 ) HSP 1 Score: 241.9 bits (616), Expect = 6.7e-64 Identity = 129/214 (60.28%), Postives = 164/214 (76.64%), Query Frame = 0
BLAST of Csor.00g262840 vs. TAIR 10
Match: AT3G26900.3 (shikimate kinase like 1 ) HSP 1 Score: 241.9 bits (616), Expect = 6.7e-64 Identity = 129/214 (60.28%), Postives = 164/214 (76.64%), Query Frame = 0
BLAST of Csor.00g262840 vs. TAIR 10
Match: AT2G21940.1 (shikimate kinase 1 ) HSP 1 Score: 136.0 bits (341), Expect = 5.2e-32 Identity = 70/209 (33.49%), Postives = 126/209 (60.29%), Query Frame = 0
BLAST of Csor.00g262840 vs. TAIR 10
Match: AT2G21940.2 (shikimate kinase 1 ) HSP 1 Score: 136.0 bits (341), Expect = 5.2e-32 Identity = 70/209 (33.49%), Postives = 126/209 (60.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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