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Csor.00g262790 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAATCCGACTCCGGCTCCTCTCGTCTATGTCCTTTTGGCTTTGCTGTTAGTCTCATCCACGATTGCAACCTCCGATGTCCCTTTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGGCTGAAATCTGGCGCCGAACGTGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGTATGTTCCGTTCGATTACTTTAATTTGATTTCGCTTTTGGTTTTTAGATTCAGCTATACTCACCCTGCGGTCTATGTGATCTAGATCGAATCGTATTTGCGCATGCGTCGTTTGATCCGTTATGTTTTGTTCTGGATCTGAATTGGATTTGGTTGTGCGTTGTTTTGTGATTGTTTTTATGTAGTCGTAATTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGGTTATGGGTTTATAATCATGGAATACTCTCTCCATTGGTACGAGGCCTTTTGGGGAAGTCCAAAGCAAAGCCATGAGAGCTTATGCTAAAAGTGGACAATATCATACCATTATGGAGAGTCGTGTTTGTCTAACATAGTATCAGAGTAATGCCCTAAAATTAGTCGTGTCAATAGATCGGTATATCCTCAAATGTCGAACAAAAGACTCCAAAAGAAAAGGAATCAAGCCTTCTCAAAGGCATAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGAGGAGGCGTACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGGTTATGAGTTTATAATCAAGGAATACTCTCTTCATTGGTATGAGACCTTTTGGGGGAAGCCCAAAGCAAAGCCATGAGAGTTTATGCTCAAAGTGGACAGTATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAGTAATCAATACAAGAGACTCTGGGTTTACTTGAAAGTTTGAAGGGGTGGGCAACTGGATGTGAGATTTGGTGCATTTGTAAAAAGTTGTTTTTGTTGTGGTTGGATACCGAGATCCTCAAGGCTATTATGAACTGAAACCAGGCATACCTTGCTTAGCTGCATCAATAACTAATGTATTTTGGTTTTTTAATGTAAATTTTCTTAAAATGGTTTACCAAGTTGTTTGTTTTGACGATTGCTGCATGGTCTGTCTGAATATTCGATCATCTACTATGATATTCGTGATCACATTCCAGGAGTTATGCCTAAATCTTGTTTCAATAAGGGCTGCTACATTTTGCACTTGACACGAATATATAAATGCAGCCTCTTGAAGTGAATCTTTGTCGAAATTTTACAATTTGATGTAAATTTATCTGTTTTGAACGGTAGCCATGGGTGAGAGGAGGGTTGTGTGTGTGTGTAACAGCTCAAGTTCACCGCTAGCAGATATTGTCCGTTTTGGGCTTTCCCTTTCGGAAATGCATCTGCTAGAGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAACCAATGTGAGATCTGACCATATGTGTGTTGAGCACTAAATGAAAAGTAGAAATTGTCCAAATCAACTCGGTACGAGTATCTATTTGACATAAATGGAGCCAATGATGAGTAGCTTATGCTCACTTGAGCTTACTTTAAGGCAAAGGAGAGACTTAACTCTTTTGTTTTTTCAATTAACTCTGTTCTCTTTTGTATGTTTTATTTCTAAGTGACCTGGTTTCTTATTTTTCGACCGATTTTTTGTATTTCTTTTATAATGATTACCAGGACCGCGTATGATGTAAGTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGCGAAACTTCCAAATCGTGGGAAAGACTCGACGCGTAAGCGACACCATTTTTTTGTAATCTTTCGTATATGACATCGTACACTCCACCGGGTTTTCATGCGACTAACACAAATTCGCTGTTTGACAGTGGTGGTCATCTATCACATTCTTTCGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGAGTCCCTACAAAGTCTGCTTTACAGGTAAAGTATCCTATCAATAACGGTTATGGTTGTGTTCGGGTTACTTAACCTACAGTCGTTTTACCGTTCTTCTGGATATCTGTAGGAAGCCTTATCGACCCCAATTCTACCGTTGGATGTCCTCGCTGACAGACTACCCGAGAATAAGTTTGAGTGGGTAAGTTTAAACCGAAAATTTGTGCTCTGCTTCAAGCGTAATGATTTATAGTCTTATCCGTTTGGTTAACTGATGTAAACTTTTTACTTCGCATGGAATTTATCATTCACTGGGGCATGAATTCGACAGGTTAAGGTATGATCCATTCTGTGCTCCCATGCTCTTAATTCTTCGTTTAATATCTATTACGTATCGATTCTCGATCTCATTTTGTACCATACCATCACAAAGTTCGTGCTTGCTGCATCGACTTTTGTTCTTTTGATCGCCGTCTTTTTATTCACACGAGATTATTTTTCCTCTGCAGAGGCTGCTCGCTAAGTACGGTTCCCTGATCTCAGTGAACTCCATTGTCATTCTGTTCATCTATCTTGTGGCCAGCCCATCAAAATCTTCTGCAAAAGGAAGCAAGAAGAAGCGTTGA ATGGCGAATCCGACTCCGGCTCCTCTCGTCTATGTCCTTTTGGCTTTGCTGTTAGTCTCATCCACGATTGCAACCTCCGATGTCCCTTTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGGCTGAAATCTGGCGCCGAACGTGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGCGAAACTTCCAAATCGTGGGAAAGACTCGACGCTGGTGGTCATCTATCACATTCTTTCGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGAGTCCCTACAAAGTCTGCTTTACAGGAAGCCTTATCGACCCCAATTCTACCGTTGGATGTCCTCGCTGACAGACTACCCGAGAATAAGTTTGAGTGGGTTAAGAGGCTGCTCGCTAAGTACGGTTCCCTGATCTCAGTGAACTCCATTGTCATTCTGTTCATCTATCTTGTGGCCAGCCCATCAAAATCTTCTGCAAAAGGAAGCAAGAAGAAGCGTTGA ATGGCGAATCCGACTCCGGCTCCTCTCGTCTATGTCCTTTTGGCTTTGCTGTTAGTCTCATCCACGATTGCAACCTCCGATGTCCCTTTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGGCTGAAATCTGGCGCCGAACGTGTCTCTGTCTCCATCGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGCGAAACTTCCAAATCGTGGGAAAGACTCGACGCTGGTGGTCATCTATCACATTCTTTCGAGTTGGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGAGTCCCTACAAAGTCTGCTTTACAGGAAGCCTTATCGACCCCAATTCTACCGTTGGATGTCCTCGCTGACAGACTACCCGAGAATAAGTTTGAGTGGGTTAAGAGGCTGCTCGCTAAGTACGGTTCCCTGATCTCAGTGAACTCCATTGTCATTCTGTTCATCTATCTTGTGGCCAGCCCATCAAAATCTTCTGCAAAAGGAAGCAAGAAGAAGCGTTGA MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTFRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVASPSKSSAKGSKKKR Homology
BLAST of Csor.00g262790 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07 Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06 Identity = 51/184 (27.72%), Postives = 86/184 (46.74%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06 Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06 Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 0
BLAST of Csor.00g262790 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6588872.1 Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 372 bits (955), Expect = 1.11e-129 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of Csor.00g262790 vs. NCBI nr
Match: XP_022989726.1 (translocon-associated protein subunit beta-like [Cucurbita maxima]) HSP 1 Score: 365 bits (938), Expect = 4.32e-127 Identity = 190/194 (97.94%), Postives = 192/194 (98.97%), Query Frame = 0
BLAST of Csor.00g262790 vs. NCBI nr
Match: KAG7022632.1 (Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 363 bits (933), Expect = 2.33e-126 Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0
BLAST of Csor.00g262790 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia]) HSP 1 Score: 338 bits (866), Expect = 4.08e-116 Identity = 175/194 (90.21%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of Csor.00g262790 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]) HSP 1 Score: 334 bits (857), Expect = 9.61e-115 Identity = 171/194 (88.14%), Postives = 184/194 (94.85%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1) HSP 1 Score: 372 bits (955), Expect = 5.35e-130 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy TrEMBL
Match: A0A6J1JKZ0 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111486725 PE=3 SV=1) HSP 1 Score: 365 bits (938), Expect = 2.09e-127 Identity = 190/194 (97.94%), Postives = 192/194 (98.97%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1) HSP 1 Score: 338 bits (866), Expect = 1.98e-116 Identity = 175/194 (90.21%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1) HSP 1 Score: 334 bits (857), Expect = 4.65e-115 Identity = 171/194 (88.14%), Postives = 184/194 (94.85%), Query Frame = 0
BLAST of Csor.00g262790 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1) HSP 1 Score: 333 bits (853), Expect = 1.89e-114 Identity = 170/194 (87.63%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of Csor.00g262790 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-64 Identity = 123/186 (66.13%), Postives = 151/186 (81.18%), Query Frame = 0
BLAST of Csor.00g262790 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-64 Identity = 123/186 (66.13%), Postives = 151/186 (81.18%), Query Frame = 0
BLAST of Csor.00g262790 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-64 Identity = 123/186 (66.13%), Postives = 151/186 (81.18%), Query Frame = 0
BLAST of Csor.00g262790 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein ) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-64 Identity = 123/186 (66.13%), Postives = 151/186 (81.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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