Csor.00g261970 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g261970
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	mediator of RNA polymerase II transcription subunit 15a-like
Location	Csor_Chr11: 11430294 .. 11432436 (-)
RNA-Seq Expression	Csor.00g261970
Synteny	Csor.00g261970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATGTATGATTTCTTGCTTCTTTGAGAAGTTTGTCTGAGATTTTGTAACTTTTTGTGTTCATAGTTCGCTGCTTAGATTAGTTACTATGTGATGGTTTTCTGAATTAAGCTATGAACGGCAAAACCTTTTTCTACCTTTTCTTAAATTTGTGTTTAACTGATGGATTCGAACTGATTTTTCCAAAACCTTATCGAAGATTGTTTGGAGAGAATTCCACGTTGGGTAATTAAGATGATCCTAAGGATTAGGCCTTTTGGGGTTCCGAAAAGTAAAAGCTACGAGAGGTTATGCTCAAAGTGGAAAATATCATACAATTTTAGAGAGTCGTGATTCCTAACTTGGTATTAGAGTCATAAGAATCTTCAAATGTCGAACAAAGAAGTTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAGAGAGTGTACTCTGTTCGAGGGCTCCAGAGAAAGAAGTCGAGGGTGTACTTTGTTCGAGGGCTCCAAAGAAAGGAGTCGAGCCTCGTTTAAGAGGAGATTGTTCTTGAGGGCTACGTAGTTCTCAGGAAAGTCTCTATAGTGTAGTTACTTTGTTCGAGGGCTCCAGAAAAAGTAGTCGAGCCTCGTTTAAGGGGAAATTGTTCTTGAGAGCTACATAGTTCTCAAGAGAGGTTCTATAGTGTAGTTTGTTCGTGGGAAGGATCGTTGAGGATGGGTGAGAGAGTGGTGATTTAAAATTATCCCGTTCACTTTTCCATTTCTGGTTTGAAGATGTGGTAGGTTAGATTTTGTGGATGCGGTTCCTATTTGTTTCTTCAAGTGTTACCCCTTCATTGAACATAAGACGAATATCTTATTTGGAGCAGCATGGACCCTATTGAATTTTCCTCTAACTGTTCTAAAGTCCATTCCTTCAAAATGCCTTATCCTGACATCCCATATTGGTTGGAGAGTATGGAGAGGGGAATGAAACATTCGTTGGAGAGTATGGAGAGGGGAATGAAACATTCGTTGTAATGGTGTAGAAACCTCTCCTTAGCAGATGCATTTTAAAATCGCGAGACTGACAACTATACTTAACGGGCCAAAGCGGACAATATATTTTAGTGGTGAGGTTAGGCTGTTACAAATGGTACCAGAATCACCTAGCGAGGATGCTAGACCCTTCAGGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGGGGAACCCTAGACCCTCAAGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAACGAAACATTCCTTGTAAGGGTGTGGAGACCTCTCCCTAGTAGACACGTTTTAAAACCGCAAGATTGACAGCGATACGTAACGAGTCAAAGCGGACAATATATTTTAGCGGTGGGCTTGGGCTGTTATAAATGGTACCAGAGTCAAACACCGGACAGTAAACCAACAAAGACGCTAGGCCCTGTTCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAATGAAACATTCCTCGTAAGGGTGTGGAAACCTCCATAGTAAATTCGTTTTAAAACGGCGATACATAACAAGTCAAAGCATATAATATCTGCTAGCAGGGAGCTTAAGTTGTTACACTAATATTTTGAATCATGGACGTGGGTTACAGCTATAGTTTTTTCGCTCCCGAACAGCTTCACGTGCTTTTGCGTTTAATAAACTTGTCAGCCACCATCTTTTCCATTTTTATGTAGAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGGTACTTGCTGCTCTCACTTGTATAAAGCCCTGATCTATTATGCTATCTACTAAATACAACACTGATTACTCACCATTTCTATATTGAACCTCTAATTTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAG

mRNA sequence

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAG

Coding sequence (CDS)

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAG

Protein sequence

MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP

Homology

[Close]

BLAST of Csor.00g261970 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of Csor.00g261970 vs. NCBI nr
Match: XP_022927776.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022927777.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >KAG6588789.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022559.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (552), Expect = 5.80e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. NCBI nr
Match: XP_023530801.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo] >XP_023530802.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (545), Expect = 6.78e-70
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGT TALPSVSGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTFTALPSVSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. NCBI nr
Match: XP_022989020.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989021.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989022.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 211 bits (537), Expect = 1.13e-68
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAG WRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGDWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. NCBI nr
Match: XP_022989023.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 197 bits (502), Expect = 2.46e-63
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. NCBI nr
Match: XP_023530803.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023530804.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530805.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530806.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186 bits (471), Expect = 1.31e-58
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGE EVDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIA
Sbjct: 1   MDSNHLGPAQGGESEVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKV+  ATSQSDYLRKISLRMLTMETK GTT ALPS+SGP++SNQP
Sbjct: 61  VRFEEKVHTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL
Match: A0A6J1EI55 (mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moschata OX=3662 GN=LOC111434574 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 2.81e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL
Match: A0A6J1JL76 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486210 PE=4 SV=1)

HSP 1 Score: 211 bits (537), Expect = 5.45e-69
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAG WRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGDWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL
Match: A0A6J1JP13 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486210 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 1.19e-63
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL
Match: A0A6J1EIJ8 (mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moschata OX=3662 GN=LOC111434576 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 1.28e-58
Identity = 93/110 (84.55%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGE  VDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIA
Sbjct: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPS+SGP++SNQP
Sbjct: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL
Match: A0A6J1JL81 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486210 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 4.30e-57
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRH+PVS PEG +E+RKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHLPVSSPEGSSEVRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110
           VRFEEKVY  ATSQSDYLRKISLRML+METKSGTT ALPS+SGP++SNQP
Sbjct: 61  VRFEEKVYTVATSQSDYLRKISLRMLSMETKSGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Csor.00g261970 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 134.0 bits (336), Expect = 7.1e-32
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of Csor.00g261970 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 8.2e-20
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 19 GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYL 78
          G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79 RKISLRMLTMETKS 93
          R+I ++ML METKS
Sbjct: 65 RQICMKMLNMETKS 78

[Close]

BLAST of Csor.00g261970 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 8.2e-20
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 19 GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYL 78
          G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79 RKISLRMLTMETKS 93
          R+I ++ML METKS
Sbjct: 65 RQICMKMLNMETKS 78

The following BLAST results are available for this feature:

BLAST of Csor.00g261970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	1.0e-30	58.56	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Csor.00g261970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927776.1	5.80e-71	100.00	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata...	[more]
XP_023530801.1	6.78e-70	99.09	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
XP_022989020.1	1.13e-68	97.27	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_022989023.1	2.46e-63	91.82	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
XP_023530803.1	1.31e-58	84.55	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of Csor.00g261970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EI55	2.81e-71	100.00	mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moscha...	[more]
A0A6J1JL76	5.45e-69	97.27	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1JP13	1.19e-63	91.82	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1EIJ8	1.28e-58	84.55	mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moscha...	[more]
A0A6J1JL81	4.30e-57	82.73	mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur...	[more]

BLAST of Csor.00g261970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	7.1e-32	58.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.1	8.2e-20	60.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.2	8.2e-20	60.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 19..94 e-value: 9.9E-36 score: 121.6
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 20..98 e-value: 2.8E-23 score: 83.8
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	47040	Kix domain of CBP (creb binding protein)	coord: 20..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 1..98
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g261970.m01	Csor.00g261970.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity