Csor.00g261230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g261230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LIM domain-containing protein WLIM1-like
Location	Csor_Chr11: 10875273 .. 10878462 (+)
RNA-Seq Expression	Csor.00g261230
Synteny	Csor.00g261230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAAGGAGCAATCAAGAAAGGTCCCACCGAGATTTGAACTCGGGTTACTGGATTCAGAGTCCAATGTCCTAACCACTAGACCATGGGACCACATATATTTATAAGATTTTTGACATGTTTTTAGTTTTTATTTTCTTCGAAGAAAAAAATAGGTAAGTTGAAGGTTTAGGAAAAACGTAGGGGGCATTTCGAGAATTGAACTCGGAACCTCTCACACCCGAAGCGAAAATCATACCACTAGACCAAATGCCCACGAGGACATTTTTTTTGTATCATAATAATTTCATTCATTTATTTGATCTATCAAATCCATGTGAAAGTATTATAATCCAACCTTTTGGCTTTAAAGAGATGGAAAGTTTGATTATTCTAAAATTATGTATACGAAAAGGTGTATTGATCATAGAGAACACAAAAAAATAGTTTTAGTTTCATAGTTTCACTTCATTCCCATAAGTAAAACAATGATAGAATCTTAAGATTTAGATAGACATTTTCAAATGATTGATTAAAATCTACATGAGGGCGTGTTGATCATGCGGGTAGTTAGTGATTCCCCTACATAATTACCATTGAGCTAGGCGTGAGGTTGGTTATAGACATGTAACTTGATAGTTTTTTGGATTACCTTGCCCAGTAAATCTGTGTTATGGGAGGGCGCTGATCATGCAGGTAGTTAGTGATTGCCCTGCACGGTGGATCCGTCCTGTAGGAAGGTAATGATCACGCGAGTAGTCTGTAGAGCTGGCATGTAGAGGGGGTAGAGACCTCGACCTTGGGGTTCTACATGGCCTGTGGGATGGATTCTCTAGCTACCTCCCATGGATCATGAGAAGACTAGCACTCACCATGCTATCCCCACTTAACAGCGTGTCAAAGAAATTTAGGAGTGATTCAGGTATCGAAAGCTCAAGAACTAAGGTCCCAAACACAAACGACGAAGTAAGTAACAATCTTAGACATCTCTTAAGAAATACTCGTAGGAATCCTTGGGATGTAAGTAGGAACCTTAAGTTAAGCATTGAAATTAAGGAAATATGAAAGAAAAAGTCTAAGAATCATGAGCTGATGAACCATACGTTTTACTCGAGAATCGAGGAACATTAAAATAAACCATTAAATGAACTCCACTTCCCATGAAATTTTAAAGTTGATCTGACACGTTAAGGGTATATTTGAAATTAGTTTATATTGGGTGACTATTGGATAAGAATAAGTGGCTAAGCAAGAAAACAAAGAGAAATGACCAAAATGCTCCTATGCCTGTTACCTTCGGTTCAAGACATTAACGATGTCCAAGTAACATGAAATTTTGTAATAGACCTTATTTCATAATGATCAAGGATTATGTAAAGTTTCAAATTAATTGGAACACGTTTAGAGGCTAAAGCAAGACTTATGTATAAAATGACCCAAAAACCCTTAAATTACCTCATCTATCCATTAGGTTGTGACCTCACATGCAAGATAGACAAAAATAACCCTTAAGTGGTACCCATCTGGCGACGTGAAGGCAAGATTGAGAAGTGCCATGATGCGATCGAGAAGGTCGGTGCATCATCCAACATATCGAGAGTGTGCATTGACCAACCAAAAATTTCAAGTTGTTAACCCAAGCAACCCAAATAGAGTCTACAACTCAACCCAACCTAACCCTTTATTATCGGGTTGGGTTAGATATTTAAGTTGTTAAAAAAAATTATATTTATCTATAATACATGTTATATTAATAATTAAAATAATACCAAACATTGGAATATTCTTAATATTCATAATAATCTTAAAGATATCTTGAGAGATTATTGGTAATAATATGGGTAATGTTAGCGTTGAATTAGTATTGTTATCTTCTAATTTAAGCCAAAAATTAGTTTAATATCCATTGGCTTATCGTTAATTAAGGCTTGAAACACTAATCTCCACCTTCTATCTCTTCACCTCTTTCATTATTTATACACATCCCTTCAACACATTCTCACAACACAAAATAAAACAAAGAGAGTGGCATTTACATTGGCATTTGCATTGGCATAGCCACACAGCCACTCTCTCCCGGTCTCCGTCTCCGTGTCGGTTTTTGTTCGTTCGGTCAGTCGATCGATTGTGTTTCAAAGGGACGGTGCAGGGAGCCCGTGTGAGGTACATTAAAGGAAGCCATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGATAAGACTGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAATGGCACTCTCAAGGTAATTACACCTTCTCGTGAAGGTTCAAATCTTCATATTTCATTTTAACGTCTTTCGAACATGTTGGTTTTGCAGCTTAGCAACTATTGTTCGTTCGAGGGAGTGTTGTACTGTAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTTGAAGGCAATATTTCTTTATTTGCTTATAGTCGTTAAAATGTATTTTCTCGCTCACATTTTCTAAACTTTTTCTCCCAACATGACTCGAGACCCGAGAACATATGCCAAGGTTATTCATAACGTTTGAGTTACTCACGGCTCACTTGTTCATTTGGTTAGAATAAGTGTCGCACAATTGTTGTCCCCACTATCGCATGATTGTGACCCAACTTTCAATGAATATTCTAGTTCTAAAATTTAATTTCCTCTTTGTCAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGGTATAATTTCTTCGTTTTGTAATCTACTTTTTCGTGACTAAAACTAACATGCTTTTTTAACTATTACTAATGGATTGAGTTGAGTTGCATTGGATTATTGAACAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTTCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGATGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGAGCCACACAGCCACTCTCTCCCGGTCTCCGTCTCCGTGTCGGTTTTTGTTCGTTCGGTCAGTCGATCGATTGTGTTTCAAAGGGACGGTGCAGGGAGCCCGTGTGAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAATGGCACTCTCAAGCTTAGCAACTATTGTTCGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTTCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGATGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGAGCCACACAGCCACTCTCTCCCGGTCTCCGTCTCCGTGTCGGTTTTTGTTCGTTCGGTCAGTCGATCGATTGTGTTTCAAAGGGACGGTGCAGGGAGCCCGTGTGAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAATGGCACTCTCAAGCTTAGCAACTATTGTTCGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTTCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGATGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Protein sequence

MSHTATLSRSPSPCRFLFVRSVDRLCFKGTVQGARVSLPPIIGSSIRLASDATIAMALSSLATIVRTPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES

Homology

[Close]

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEK-ANAK-SNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCS 126
           TPKI K ++P + E+ A  K SN+F GTR+KC GC KTVYP+EKV+VNG  YHKSCFKC+
Sbjct: 79  TPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCT 138

Query: 127 HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 163
           HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 139 HGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-35
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 78  DNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIA 137
           + + AN  S+ F GTRDKC+ C K VYP+E+V V+G AYH++CFKC HGGCTISPSNYIA
Sbjct: 92  ETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIA 151

Query: 138 HEGKLYCKHHHIQLFKEKGNYSQLETE 165
           HEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 152 HEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.9e-30
Identity = 65/120 (54.17%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 66  RTPKIVKVEKPTD--NEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKC 125
           ++P     +KPT   N   +  + +F+GT+DKC+ CTKTVYP+EKVTV    YHKSCFKC
Sbjct: 77  QSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKC 136

Query: 126 SHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAA 184
           SHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A A    A+  +AA
Sbjct: 137 SHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAATAAAAAVAA 196

[Close]

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 89  FAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 148
           F+GT++KC+ C+KTVYP+EKVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH 
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF 160

Query: 149 IQLFKEKGNYSQL--ETERQKSNAVAMKLGASLEIAAES 186
            QLFKEKG+Y+ L      ++S A A+  G       ES
Sbjct: 161 AQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 75  KPTDNEKANAKSNL---FAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTIS 134
           + TD E A A S +   F+GT+DKC+ C KTVYPLEK+T+ G +YHKSCFKCSHGGC ++
Sbjct: 81  RSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILT 140

Query: 135 PSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 172
            S+Y A  G LYCK H  QLF EKG+Y+ ++ + +    +
Sbjct: 141 TSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQEVL 180

[Close]

BLAST of Csor.00g261230 vs. NCBI nr
Match: KAG6588715.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371 bits (952), Expect = 1.60e-129
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MSHTATLSRSPSPCRFLFVRSVDRLCFKGTVQGARVSLPPIIGSSIRLASDATIAMALSS 60
           MSHTATLSRSPSPCRFLFVRSVDRLCFKGTVQGARVSLPPIIGSSIRLASDATIAMALSS
Sbjct: 1   MSHTATLSRSPSPCRFLFVRSVDRLCFKGTVQGARVSLPPIIGSSIRLASDATIAMALSS 60

Query: 61  LATIVRTPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSC 120
           LATIVRTPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSC
Sbjct: 61  LATIVRTPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSC 120

Query: 121 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLE 180
           FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLE
Sbjct: 121 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLE 180

Query: 181 IAAES 185
           IAAES
Sbjct: 181 IAAES 185

[Close]

BLAST of Csor.00g261230 vs. NCBI nr
Match: KAG7022503.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (627), Expect = 1.07e-79
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 66  RTPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSH 125
           RTPKIVKVEKPTDNEKANAKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSH
Sbjct: 87  RTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSH 146

Query: 126 GGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES
Sbjct: 147 GGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 206

[Close]

BLAST of Csor.00g261230 vs. NCBI nr
Match: XP_022927664.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata])

HSP 1 Score: 244 bits (622), Expect = 4.71e-79
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKIVKVEKPTDNEKANAKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 198

[Close]

BLAST of Csor.00g261230 vs. NCBI nr
Match: XP_022988956.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 242 bits (618), Expect = 1.91e-78
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKIVK+EKPTDNEKANAKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKIVKIEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN+VAMKLGASLEIAAES
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNSVAMKLGASLEIAAES 198

[Close]

BLAST of Csor.00g261230 vs. NCBI nr
Match: XP_023529874.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (617), Expect = 2.71e-78
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKIVKVEKPTDNEKA+AKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKIVKVEKPTDNEKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 198

[Close]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL
Match: A0A6J1EIM6 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111434484 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 2.28e-79
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKIVKVEKPTDNEKANAKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 198

[Close]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL
Match: A0A6J1JIN6 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111486161 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 9.25e-79
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKIVK+EKPTDNEKANAKSNLFAGTRDKC+GCTKTVYPLEKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKIVKIEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN+VAMKLGASLEIAAES
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNSVAMKLGASLEIAAES 198

[Close]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL
Match: A0A5A7SP97 (LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001270 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 8.45e-66
Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPK++K EKP++NE A + SN+F GTRDKCSGCTKTVYP+EKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN---AVAMKLGASLEIAA 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK+N   A A+KL   +EIAA
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAVAAAIKLTTPMEIAA 199

[Close]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL
Match: A0A1S4E128 (LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC107991339 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 4.38e-64
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 71  VKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTI 130
           +K EKP++NE A + SN+F GTRDKCSGCTKTVYP+EKVTVNG AYHKSCFKCSHGGCTI
Sbjct: 1   MKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHGGCTI 60

Query: 131 SPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN---AVAMKLGASLEIAAES 185
           SPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK+N   A A+KL   +EIAAES
Sbjct: 61  SPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAVAAAIKLTTPMEIAAES 118

[Close]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL
Match: A0A6J1GLG2 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111455348 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.85e-62
Identity = 97/122 (79.51%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHG 126
           TPKI K EKPT+NE A + S++F GTRDKC+GC KTVYP+EKVTVNG AYHKSCFKCSHG
Sbjct: 80  TPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIEKVTVNGTAYHKSCFKCSHG 139

Query: 127 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMK-LGAS--LEIAA 185
           GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK N+V +  L A+  +EIAA
Sbjct: 140 GCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKENSVPINTLNANNPMEIAA 199

[Close]

BLAST of Csor.00g261230 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.5e-39
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 67  TPKIVKVEKPTDNEK-ANAK-SNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCS 126
           TPKI K ++P + E+ A  K SN+F GTR+KC GC KTVYP+EKV+VNG  YHKSCFKC+
Sbjct: 79  TPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCT 138

Query: 127 HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 163
           HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 139 HGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of Csor.00g261230 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-31
Identity = 65/120 (54.17%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 66  RTPKIVKVEKPTD--NEKANAKSNLFAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKC 125
           ++P     +KPT   N   +  + +F+GT+DKC+ CTKTVYP+EKVTV    YHKSCFKC
Sbjct: 77  QSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKC 136

Query: 126 SHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAA 184
           SHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A A    A+  +AA
Sbjct: 137 SHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAATAAAAAVAA 196

[Close]

BLAST of Csor.00g261230 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 89  FAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 148
           F+GT++KC+ C+KTVYP+EKVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH 
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF 160

Query: 149 IQLFKEKGNYSQL--ETERQKSNAVAMKLGASLEIAAES 186
            QLFKEKG+Y+ L      ++S A A+  G       ES
Sbjct: 161 AQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Csor.00g261230 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 89  FAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 148
           F+GT++KC+ C+KTVYP+EKVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH 
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF 160

Query: 149 IQLFKEKGNYSQL--ETERQKSNAVAMKLGASLEIAAES 186
            QLFKEKG+Y+ L      ++S A A+  G       ES
Sbjct: 161 AQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Csor.00g261230 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 89  FAGTRDKCSGCTKTVYPLEKVTVNGMAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 148
           F+GT++KC+ C+KTVYP+EKVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH 
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF 160

Query: 149 IQLFKEKGNYSQL--ETERQKSNAVAMKLGASLEIAAES 186
            QLFKEKG+Y+ L      ++S A A+  G       ES
Sbjct: 161 AQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES 199

The following BLAST results are available for this feature:

BLAST of Csor.00g261230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	4.9e-38	75.51	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	3.9e-35	72.41	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	4.9e-30	54.17	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.7e-27	59.60	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q7F9R9	1.4e-24	52.00	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Csor.00g261230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588715.1	1.60e-129	100.00	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7022503.1	1.07e-79	98.33	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022927664.1	4.71e-79	98.32	LIM domain-containing protein WLIM1-like [Cucurbita moschata]	[more]
XP_022988956.1	1.91e-78	96.64	LIM domain-containing protein WLIM1-like [Cucurbita maxima]	[more]
XP_023529874.1	2.71e-78	97.48	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g261230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIM6	2.28e-79	98.32	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JIN6	9.25e-79	96.64	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7SP97	8.45e-66	81.15	LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4E128	4.38e-64	81.36	LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC107991339...	[more]
A0A6J1GLG2	1.85e-62	79.51	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Csor.00g261230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	3.5e-39	75.51	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	3.5e-31	54.17	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	1.2e-28	59.60	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.2e-28	59.60	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.2e-28	59.60	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 95..147 e-value: 7.4E-15 score: 65.4
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 96..151 e-value: 2.5E-12 score: 46.8
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 94..154 score: 12.8602
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 90..160 e-value: 2.5E-20 score: 74.4
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 66..173
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 66..173
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 96..156 e-value: 2.54942E-42 score: 134.135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 88..121
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 122..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g261230.m01	Csor.00g261230.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding