Csor.00g260880 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g260880
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 10526037 .. 10526414 (+)
RNA-Seq ExpressionCsor.00g260880
SyntenyCsor.00g260880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTCCGGAGCCTACTTCTCAGTCGGCATCTAGGGATCAGCCGACTGTTATTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAAGTTAAGTGAATCAAGCGGTGCAGAGCCGAGTGGATTAGGTGGTACAGATAGCTTTTGCTGGTTTTGGAAGGTGGGCGGCTCCGACAGCACCTGTACCTAGCCATGTGACTCTAGTGCCTGAAGCACAAGTAGGTGTTCAGGTAGCAATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAACGGTAGTGACAGAGGCACCACTACGGGTAGTAACCTATGGGCGATGA

mRNA sequence

ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTCCGGAGCCTACTTCTCAGTCGGCATCTAGGGATCAGCCGACTGTTATTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAACACCTGTACCTAGCCATGTGACTCTAGTGCCTGAAGCACAAGTAGGTGTTCAGGTAGCAATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAACGGTAGTGACAGAGGCACCACTACGGGTAGTAACCTATGGGCGATGA

Coding sequence (CDS)

ATGTCCAATGTGGACCTGGGGATTGAGGGGCAGCCTATAGAAGGAACTGCTCCAGCAGTGGCGGTTCCGGAGCCTACTTCTCAGTCGGCATCTAGGGATCAGCCGACTGTTATTATTACTCTGGAGGCCTTGCAATCGCTGATTCAAACACCTGTACCTAGCCATGTGACTCTAGTGCCTGAAGCACAAGTAGGTGTTCAGGTAGCAATACCTCCAACAATTTCGAAGGAGCTACCTGGTACAACGGTAGTGACAGAGGCACCACTACGGGTAGTAACCTATGGGCGATGA

Protein sequence

MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVPEAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR
Homology
BLAST of Csor.00g260880 vs. NCBI nr
Match: KAG6588680.1 (hypothetical protein SDJN03_17245, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (453), Expect = 2.65e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60
          MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR 96
          EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR
Sbjct: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR 96

BLAST of Csor.00g260880 vs. NCBI nr
Match: KAG6573685.1 (hypothetical protein SDJN03_27572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (429), Expect = 1.21e-52
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60
          MSNVDLGIEGQPIEGTAPAVA+PE  SQSASRDQPTV+ITLEALQSLIQT VPSHVTLVP
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETISQSASRDQPTVVITLEALQSLIQTSVPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR 96
          EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR
Sbjct: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR 96

BLAST of Csor.00g260880 vs. NCBI nr
Match: KAG6596973.1 (hypothetical protein SDJN03_10153, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 3.60e-49
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60
          MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTV+ITLEALQSLIQTP+PSHVTLVP
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVVITLEALQSLIQTPIPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVV 92
          EAQVGVQVAIPPTISKELP T VVTEAPLR V
Sbjct: 61 EAQVGVQVAIPPTISKELPSTAVVTEAPLRAV 92

BLAST of Csor.00g260880 vs. NCBI nr
Match: KAG6573500.1 (hypothetical protein SDJN03_27387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158 bits (400), Expect = 3.22e-48
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTPVPSHVTLVP 60
          MSNVDLGIEGQPIEGTAPAVA+PE TSQSASRDQPTV+ITLEAL +    PVPSHVTLVP
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETTSQSASRDQPTVVITLEALWAAPTAPVPSHVTLVP 60

Query: 61 EAQVGVQVAIPPTISKELPGTTVVTEAPLRVVTYGR 96
          EAQ+GVQVAIPPTISKELPGT VVTEAPLRVVTYG+
Sbjct: 61 EAQIGVQVAIPPTISKELPGTAVVTEAPLRVVTYGQ 96

BLAST of Csor.00g260880 vs. NCBI nr
Match: KAG6573684.1 (hypothetical protein SDJN03_27571, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 6.28e-48
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPTVIITLEALQSLIQTP---VPSHVT 60
          MSNVDLGIEGQPIEGTAPAVA+PE TSQSASRDQPTV+ITLEALQSLIQTP   VPSHVT
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETTSQSASRDQPTVVITLEALQSLIQTPTASVPSHVT 60

Query: 61 LVPEAQVGVQVAIPPTISKELPGTTVVTEAPLRV 91
          LVPEAQVGVQVAIPPTISKELPGTTVVTEAPLRV
Sbjct: 61 LVPEAQVGVQVAIPPTISKELPGTTVVTEAPLRV 94

BLAST of Csor.00g260880 vs. ExPASy TrEMBL
Match: A0A6J1EMJ0 (uncharacterized protein LOC111434816 OS=Cucurbita moschata OX=3662 GN=LOC111434816 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.18e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0

Query: 1  MSNVDLGIEGQPIEGTAPAVAVPEPTSQSASRDQPT 36
          MSNVDLGIEGQPIEGTAPAVA+PE TSQSASRDQPT
Sbjct: 1  MSNVDLGIEGQPIEGTAPAVAIPETTSQSASRDQPT 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6588680.12.65e-56100.00hypothetical protein SDJN03_17245, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573685.11.21e-5294.79hypothetical protein SDJN03_27572, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6596973.13.60e-4994.57hypothetical protein SDJN03_10153, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573500.13.22e-4887.50hypothetical protein SDJN03_27387, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573684.16.28e-4893.62hypothetical protein SDJN03_27571, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1EMJ08.18e-1294.44uncharacterized protein LOC111434816 OS=Cucurbita moschata OX=3662 GN=LOC1114348... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g260880.m01Csor.00g260880.m01mRNA