Csor.00g257700 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g257700
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR-related protein
LocationCsor_Chr17: 571513 .. 571779 (-)
RNA-Seq ExpressionCsor.00g257700
SyntenyCsor.00g257700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATTTGAAGATAATTATTTCTCGACATCCTTAACTACTTCAACCAAATCTCAAGCTTGCTTCTTCCTCTTCCTCCTTGTTCTTCTCCTCCTAGCCGTTCCTTATCGATTCTCGACTTCGCCGAGCTCCATGGCTTCAACGAGTAATCCGTCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCCCTAGACCACAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACCTCCAACAAGTAA

mRNA sequence

ATGGCAAAATTTGAAGATAATTATTTCTCGACATCCTTAACTACTTCAACCAAATCTCAAGCTTGCTTCTTCCTCTTCCTCCTTGTTCTTCTCCTCCTAGCCGTTCCTTATCGATTCTCGACTTCGCCGAGCTCCATGGCTTCAACGAGTAATCCGTCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCCCTAGACCACAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACCTCCAACAAGTAA

Coding sequence (CDS)

ATGGCAAAATTTGAAGATAATTATTTCTCGACATCCTTAACTACTTCAACCAAATCTCAAGCTTGCTTCTTCCTCTTCCTCCTTGTTCTTCTCCTCCTAGCCGTTCCTTATCGATTCTCGACTTCGCCGAGCTCCATGGCTTCAACGAGTAATCCGTCCCGTCCTCCTTCGTCTAAGGCCATGGCAGAACAAGCCTTCCCTAGACCACAGTTTGAAGCATCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACCTCCAACAAGTAA

Protein sequence

MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKAMAEQAFPRPQFEASMHEVPSGPNPTSNK
Homology
BLAST of Csor.00g257700 vs. NCBI nr
Match: KAG6574868.1 (CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (428), Expect = 9.69e-53
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKA 60
          MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKA
Sbjct: 1  MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKA 60

Query: 61 MAEQAFPRPQFEASMHEVPSGPNPTSNK 88
          MAEQAFPRPQFEASMHEVPSGPNPTSNK
Sbjct: 61 MAEQAFPRPQFEASMHEVPSGPNPTSNK 88

BLAST of Csor.00g257700 vs. NCBI nr
Match: KAG6593788.1 (hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 2.02e-25
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1  MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSK- 60
          MA+ +++YFSTSLT STKS+ACFFLFLL+L     PY FST PSS AS S PSRPPSS  
Sbjct: 1  MARLKEHYFSTSLT-STKSRACFFLFLLLL-----PYNFSTLPSS-ASASTPSRPPSSSL 60

Query: 61 AMAEQAFPRP--------QFEASMHEVPSGPNPTSNK 88
          AM EQAF  P        QFEA+MHEVPSGPNPT+NK
Sbjct: 61 AMEEQAFSSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90

BLAST of Csor.00g257700 vs. NCBI nr
Match: KGN61461.1 (hypothetical protein Csa_006135 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.18e-15
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 18 KSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKAMAEQAFPRPQFEASMHE 77
          KSQACFFLFLLVLLLL VP+R ST P++      PSRPPS+  MA        FEA+MHE
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPNT------PSRPPSN-FMA-------MFEAAMHE 66

Query: 78 VPSGPNPTSNK 88
          VPSGPNPTSNK
Sbjct: 70 VPSGPNPTSNK 66

BLAST of Csor.00g257700 vs. NCBI nr
Match: MBA0871173.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 48.1 bits (113), Expect = 2.22e-04
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 10 STSLTTSTKSQACFFLFLLVLL---LLAVPYRFSTS------PSSMASTSNPSRPPSSKA 69
          STS+  S++S A   LF+L+LL   L A P   S+S      P S +STS P+   S K 
Sbjct: 12 STSIILSSQSCALLQLFVLLLLISPLFARPIYSSSSTTRNLHPFSTSSTSIPAAQSSGKT 71

Query: 70 MAEQAFPRPQFEASMHEVPSGPNPTSNK 88
           A       +FEA +HEVPSGPNP SNK
Sbjct: 72 GATDG----RFEADVHEVPSGPNPESNK 95

BLAST of Csor.00g257700 vs. NCBI nr
Match: KAG8499015.1 (hypothetical protein CXB51_005436 [Gossypium anomalum])

HSP 1 Score: 47.0 bits (110), Expect = 2.32e-04
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 14 TTSTKSQACFFLFLLVLLLLAVP-YRFSTSPS-SMASTSNPSRPPSSKAMAEQAFPRPQF 73
          T S +  A   LFLL+LL++  P + +   PS   +S +N +  P+S A      P PQF
Sbjct: 14 TKSPQYYALLLLFLLLLLIMISPLFAYHRQPSLQQSSPTNFNSFPTSAATPAVTGP-PQF 73

Query: 74 EASMHEVPSGPNPTSNK 88
          +A+ HEVPSGPNP SNK
Sbjct: 74 KAAAHEVPSGPNPESNK 89

BLAST of Csor.00g257700 vs. ExPASy TrEMBL
Match: A0A0A0LNB8 (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.69e-16
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 18 KSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSKAMAEQAFPRPQFEASMHE 77
          KSQACFFLFLLVLLLL VP+R ST P++      PSRPPS+  MA        FEA+MHE
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPNT------PSRPPSN-FMA-------MFEAAMHE 66

Query: 78 VPSGPNPTSNK 88
          VPSGPNPTSNK
Sbjct: 70 VPSGPNPTSNK 66

BLAST of Csor.00g257700 vs. ExPASy TrEMBL
Match: A0A803LAH9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.96e-06
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 40  STSPSSMASTSNPSRPPSSKAMAEQAFPRPQFEASMHEVPSGPNPTSNK 88
           ++S SS A+T+  +  P++KA  E++ P  QFEAS HEVPSGPNP SN+
Sbjct: 65  TSSSSSTATTTTSTLRPNNKAHHEKSLPSKQFEASEHEVPSGPNPISNR 113

BLAST of Csor.00g257700 vs. ExPASy TrEMBL
Match: A0A803MLN1 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 7.98e-06
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 40  STSPSSMASTSNPSRPPSSKAMAEQAFPRPQFEASMHEVPSGPNPTSNK 88
           STS SS A+TS     P+ KA  E+  P  QFEAS HEVPSGPNP SN+
Sbjct: 65  STSSSSTATTST--LRPNKKAHHEKTLPSKQFEASEHEVPSGPNPISNR 111

BLAST of Csor.00g257700 vs. ExPASy TrEMBL
Match: A0A7J9MJ79 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022006 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.07e-04
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 10 STSLTTSTKSQACFFLFLLVLL---LLAVPYRFSTS------PSSMASTSNPSRPPSSKA 69
          STS+  S++S A   LF+L+LL   L A P   S+S      P S +STS P+   S K 
Sbjct: 12 STSIILSSQSCALLQLFVLLLLISPLFARPIYSSSSTTRNLHPFSTSSTSIPAAQSSGKT 71

Query: 70 MAEQAFPRPQFEASMHEVPSGPNPTSNK 88
           A       +FEA +HEVPSGPNP SNK
Sbjct: 72 GATDG----RFEADVHEVPSGPNPESNK 95

BLAST of Csor.00g257700 vs. ExPASy TrEMBL
Match: A0A5D2R5A9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A03G115400v1 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.12e-04
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 14 TTSTKSQACFFLFLLVLLLLAVP-YRFSTSPS-SMASTSNPSRPPSSKAMAEQAFPRPQF 73
          T S +  A   LFLL+LL++  P + +   PS   +S +N +  P+S A      P PQF
Sbjct: 14 TKSPQYYALLLLFLLLLLIMISPLFAYHRQPSLQQSSPTNFNSFPTSAARPAVTDP-PQF 73

Query: 74 EASMHEVPSGPNPTSNK 88
          +A+ HEVPSGPNP SNK
Sbjct: 74 KAAAHEVPSGPNPESNK 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6574868.19.69e-53100.00CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. ... [more]
KAG6593788.12.02e-2565.98hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61461.11.18e-1566.20hypothetical protein Csa_006135 [Cucumis sativus][more]
MBA0871173.12.22e-0445.45hypothetical protein [Gossypium schwendimanii][more]
KAG8499015.12.32e-0444.16hypothetical protein CXB51_005436 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
A0A0A0LNB85.69e-1666.20CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=... [more]
A0A803LAH92.96e-0653.06Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A803MLN17.98e-0659.18Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A7J9MJ791.07e-0445.45Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022006 PE=4... [more]
A0A5D2R5A91.12e-0444.16Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A03G115400v1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g257700.m01Csor.00g257700.m01mRNA