Csor.00g256910 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g256910
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Protein PXR1
Location	Csor_Chr17: 113354 .. 116218 (+)
RNA-Seq Expression	Csor.00g256910
Synteny	Csor.00g256910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCAAAGGACTACGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTATGATCGTCTCCCACCGCCGCCGAACGCTTCCCAAGTCGATACTCTGCCTTCCAAACTCCGCAAATTAATGACCTTCACTTCCCCTCGACCTCAAGGTTTGTTTATTTGTTTCTTTGCGTTTATTTGTTTGTCGATGAGTTTATTTAATTTCAGGCTATAATCTCCTCCCCTGGTGCTTACAGAGTCTGAGAAGGTCTCGGAGGATGTTCAGCGTAAGCGCAAGAGAGAAGCCGTTGATACTGAAAAGGTAATTGATATTTTCTTTAATTCTTCTCTGTCTCAGATTGGTACGTTTGCAGTTATCGGGTTTTACTTGAATTATTTTGTCTTAGGGCTTATACTGGACAAGGTGACAGAGGATTGGCATTGTATCGTTTAGTATTTCAGTCTCTAACCAATGTTGTTGTTGTAAGTTCGGGTGCAAGAAAGTTGAAATTAGTATCACTAGGCATCCTAAGTATTTTCTCATCATCTTCTTCTTTGTTTGCCGTTGCCCTTCTCTTACCGCGTACCTGGTTTGGCGTTAGAGTAGAAGATATCTATTAGTAGTTTCTATTGTTAAGTAAATGGCTTATTCTGTTATTTTATCCGGCGTGGTTACGAGGTTAAGCTTACTCCCCCTGAATGGGGATGCAAAATTTCTCGTGTTAAGTTTGCCTGCTTGAAGAGCTTGATAACGGCATTACATGCTCATAGTTTGTGTTGCTCAGTTGTAGTTTGACTTCCACTTTCTATACAGAAATACCATCCAAAAGAAGCTCCGGGAAAATCTGACTTAAAGAGCGAAGGTAATGGTGGAAATTCACAAATGCCTCAGCTTACGGGGAGTGATGATGACGTTCAAAGCAAGTCCAGTGAGAAGAAAAACAAAAAACGAAAGAAAAAGCAGGTTACTGACCTTCGTTTTGAAGACTTGTCGGAGAATTCAAATCGACGTTTAAAGAAACGGGAACGCCAGAGAAAGTAAGCATTTTACTGCACCTCAAAAATTTGCTTCCTTACCTTTTGTGAGGTTGCATGTTTTTTTTACTATTGAGATGACTTGTTCATTTTGCATTTTTATTCCAATTACATTCCCATAAGTGAAAATAAAATAAACAAGTTTTGAACGTATTGCTTAAATGATGAAGAGAAATGTCCAGAAATTGCGATGTCCCAATGTTTTCCTTTTGGTAGTGACATAATTTGGCTATCTGAGAGGACCCTATCTACCTCATTTTTGTCAACTTGGTGCCCAAGGAAAGTTTTGAGTAATTTGATTACACAAGGTGTTTATGATTTCAATCATAGCAATGTGATAGGCCGTAACGAGCCTTATGCGAGCAAGAGGCATCATGAAGTATTGCATGCACAAAGGAGACTAGTTAGAAGGGTTCATGGTTATTTCAGGGAGTGAGTAAAGGGGACTAGTTAGAAGGGAGAGGAGAACGAGGAAATTTTTTGTACGAGGGGAATATGTGCTTGAAGGGGAAAATCGGAGAGAAAGAAGTAGTAGTGCTAATTGATAGGGAAGCAATCTAAAAATTTTTATCCAAAAAAAGTTATTCAGGAGGATGGTTTTAGGAATACCTTTAGGGCTGGTGTTGGAAATATTATTAAGGATATTAAGATATAAGGGTATATTAGGGAGGTGATGTAGGAAACAATTGTTTTGTTAGACTTTGGGTTTTTGAAGCGGTCTTTTCAAATATTTAACTATATTCTTCAAGTATTTCGAAAATATTTCTGTTCTATTTACTCTATCAATATTGGTACTAGAACACTTGACCTGGAAGTGAAAAAAAAATACTGGATGGAATAAAAAGTGACATTAGAGCAATCTCTCCAATCTGAGGCATTGAAATCGAAATTAATGGGGAAGAAACTATCTTAATTCATTTTAAGGAGCCTGCATGCAAACGAAAGACAATCAACCAATATTCAATCTGAAAGATTGTTGGCAGTTTCGAAATTAGAGCAATCGAATTGGCATCGAAATTGACACTTCGGGGGAAGAAACTATCTAAGTTCATAAGGGCTGGCATGCAAACGATAGACAACCAACCAATATTCAATCTGAGAAATTGTTGACAATTGCGAAGGAAGGATGATGGAGGGTTCTCAAAGGCAGCATATAAGGGAAGAATGAGGTTGGGTACAGACTAAAAGCAAGGAATTTGTATGTAATTCAGAGAGATGAAAGGACTCTCAAATATAATTCCAATGTTTCAACCAGTTTTCTTATGGCTTTCTAGAAGTATATCCTAATCCTCTGGTTATTCAATTGAACTTAAGGCTATTACAGAATTATGCACTAGTTTTATCTACCCATTTTCAATATTCTAATCGTGGTCATTTCGATTGCATTTGTCATGTACCATGTTATAGTAGGTCTGTTGTAGAAACTTGGTGAACTGGGAAGCATTTGTTCCCTTTTTTTAACTGATCCATTACGTTTATTTCTAAATAGATATCACGAGGCTAAGAAAAATAAACACAAAAAGGGCAAGACAGACGAGGATCTAGACTTCCCAAGACATGAAAAAATAAAATTTGGTGACGTGGTTGAAGCTCCATTGAAGTTGACTGCAGTTCCGAAGGTAACATCTAACTCTTCATGGTCAAGTTAAATGATAAATGAACACTCCCATTTGGGTACTTGACAATTTTGTTGTTCCAATGTTTCATATAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGATTGCAGGCTATAACTGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGTTGCAAATACCTTCAATGACTATATCACCAGCTGTTTAA

mRNA sequence

ATGGGTGGCAAAGGACTACGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTATGATCGTCTCCCACCGCCGCCGAACGCTTCCCAAGTCGATACTCTGCCTTCCAAACTCCGCAAATTAATGACCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCGGAGGATGTTCAGCGTAAGCGCAAGAGAGAAGCCGTTGATACTGAAAAGAAATACCATCCAAAAGAAGCTCCGGGAAAATCTGACTTAAAGAGCGAAGGTAATGGTGGAAATTCACAAATGCCTCAGCTTACGGGGAGTGATGATGACGTTCAAAGCAAGTCCAGTGAGAAGAAAAACAAAAAACGAAAGAAAAAGCAGGTTACTGACCTTCGTTTTGAAGACTTGTCGGAGAATTCAAATCGACGTTTAAAGAAACGGGAACGCCAGAGAAAATATCACGAGGCTAAGAAAAATAAACACAAAAAGGGCAAGACAGACGAGGATCTAGACTTCCCAAGACATGAAAAAATAAAATTTGGTGACGTGGTTGAAGCTCCATTGAAGTTGACTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGATTGCAGGCTATAACTGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGTTGCAAATACCTTCAATGACTATATCACCAGCTGTTTAA

Coding sequence (CDS)

ATGGGTGGCAAAGGACTACGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTATGATCGTCTCCCACCGCCGCCGAACGCTTCCCAAGTCGATACTCTGCCTTCCAAACTCCGCAAATTAATGACCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCGGAGGATGTTCAGCGTAAGCGCAAGAGAGAAGCCGTTGATACTGAAAAGAAATACCATCCAAAAGAAGCTCCGGGAAAATCTGACTTAAAGAGCGAAGGTAATGGTGGAAATTCACAAATGCCTCAGCTTACGGGGAGTGATGATGACGTTCAAAGCAAGTCCAGTGAGAAGAAAAACAAAAAACGAAAGAAAAAGCAGGTTACTGACCTTCGTTTTGAAGACTTGTCGGAGAATTCAAATCGACGTTTAAAGAAACGGGAACGCCAGAGAAAATATCACGAGGCTAAGAAAAATAAACACAAAAAGGGCAAGACAGACGAGGATCTAGACTTCCCAAGACATGAAAAAATAAAATTTGGTGACGTGGTTGAAGCTCCATTGAAGTTGACTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGATTGCAGGCTATAACTGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGTTGCAAATACCTTCAATGACTATATCACCAGCTGTTTAA

Protein sequence

MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDVQRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRKKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVVEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV

Homology

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BLAST of Csor.00g256910 vs. NCBI nr
Match: KAG6574789.1 (hypothetical protein SDJN03_25428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442 bits (1136), Expect = 6.46e-156
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120
           QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK
Sbjct: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120

Query: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180
           KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV
Sbjct: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180

Query: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235

[Close]

BLAST of Csor.00g256910 vs. NCBI nr
Match: XP_022959194.1 (uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959195.1 uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959196.1 uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959197.1 uncharacterized protein LOC111460256 [Cucurbita moschata])

HSP 1 Score: 437 bits (1123), Expect = 6.20e-154
Identity = 232/235 (98.72%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120
           QRKRKREAVDTEKKYHPKEAPGKSDLKS+GNGGNSQMPQLTGSDDDVQSK SEKKNKKRK
Sbjct: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSKGNGGNSQMPQLTGSDDDVQSKFSEKKNKKRK 120

Query: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180
           KKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV
Sbjct: 121 KKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180

Query: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235

[Close]

BLAST of Csor.00g256910 vs. NCBI nr
Match: XP_023547832.1 (protein PXR1 [Cucurbita pepo subsp. pepo] >XP_023547833.1 protein PXR1 [Cucurbita pepo subsp. pepo] >XP_023547834.1 protein PXR1 [Cucurbita pepo subsp. pepo] >XP_023547835.1 protein PXR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433 bits (1114), Expect = 1.46e-152
Identity = 230/235 (97.87%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120
           QRKRKREAVDTEKKYHPKEAPGKSDLKS+G+GGNSQ+PQLTGSDDDVQSKSSEKK KKRK
Sbjct: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSKGHGGNSQVPQLTGSDDDVQSKSSEKKKKKRK 120

Query: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180
           KKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV
Sbjct: 121 KKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180

Query: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235

[Close]

BLAST of Csor.00g256910 vs. NCBI nr
Match: KAG7013369.1 (hypothetical protein SDJN02_23533 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429 bits (1104), Expect = 9.33e-151
Identity = 234/253 (92.49%), Postives = 235/253 (92.89%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDTEK------------------KYHPKEAPGKSDLKSEGNGGNSQMPQLTG 120
           QRKRKREAVDTEK                  KYHPKEAPGKSDLKSEGNGGNSQMPQLTG
Sbjct: 61  QRKRKREAVDTEKRGYEVKLTPPEWGCKISRKYHPKEAPGKSDLKSEGNGGNSQMPQLTG 120

Query: 121 SDDDVQSKSSEKKNKKRKKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKT 180
           SDDDVQSKSSEKKNKKRKKKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKGKT
Sbjct: 121 SDDDVQSKSSEKKNKKRKKKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGKT 180

Query: 181 DEDLDFPRHEKIKFGDVVEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRP 235
           DEDLDFPRHEKIKFGDVVEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRP
Sbjct: 181 DEDLDFPRHEKIKFGDVVEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRP 240

[Close]

BLAST of Csor.00g256910 vs. NCBI nr
Match: XP_023006093.1 (probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima] >XP_023006094.1 probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima] >XP_023006095.1 probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima] >XP_023006097.1 probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima])

HSP 1 Score: 427 bits (1098), Expect = 4.15e-150
Identity = 229/236 (97.03%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLM+FTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMSFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDT-EKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKR 120
           QRKRKREAVDT EKKYHPKEAPGKSDLKS+GNGGNSQMPQLTGSDDDVQSKS+EKKNKKR
Sbjct: 61  QRKRKREAVDTTEKKYHPKEAPGKSDLKSKGNGGNSQMPQLTGSDDDVQSKSTEKKNKKR 120

Query: 121 KKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDV 180
           KKKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKG +DEDLDFPRHEKIKFGDV
Sbjct: 121 KKKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGISDEDLDFPRHEKIKFGDV 180

Query: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 236

[Close]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL
Match: A0A6J1H3V7 (uncharacterized protein LOC111460256 OS=Cucurbita moschata OX=3662 GN=LOC111460256 PE=4 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 3.00e-154
Identity = 232/235 (98.72%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120
           QRKRKREAVDTEKKYHPKEAPGKSDLKS+GNGGNSQMPQLTGSDDDVQSK SEKKNKKRK
Sbjct: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSKGNGGNSQMPQLTGSDDDVQSKFSEKKNKKRK 120

Query: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180
           KKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV
Sbjct: 121 KKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180

Query: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235

[Close]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL
Match: A0A6J1KUZ8 (probable H/ACA ribonucleoprotein complex subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111498941 PE=4 SV=1)

HSP 1 Score: 427 bits (1098), Expect = 2.01e-150
Identity = 229/236 (97.03%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLM+FTSPRPQESEKVSEDV
Sbjct: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMSFTSPRPQESEKVSEDV 60

Query: 61  QRKRKREAVDT-EKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKR 120
           QRKRKREAVDT EKKYHPKEAPGKSDLKS+GNGGNSQMPQLTGSDDDVQSKS+EKKNKKR
Sbjct: 61  QRKRKREAVDTTEKKYHPKEAPGKSDLKSKGNGGNSQMPQLTGSDDDVQSKSTEKKNKKR 120

Query: 121 KKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDV 180
           KKKQVTDLRFEDLSENSNRRLKKRERQ+KYHEAKKNKHKKG +DEDLDFPRHEKIKFGDV
Sbjct: 121 KKKQVTDLRFEDLSENSNRRLKKRERQKKYHEAKKNKHKKGISDEDLDFPRHEKIKFGDV 180

Query: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV
Sbjct: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 236

[Close]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL
Match: A0A5A7TEP7 (Protein PXR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002900 PE=4 SV=1)

HSP 1 Score: 361 bits (927), Expect = 2.19e-124
Identity = 198/235 (84.26%), Postives = 216/235 (91.91%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKG+RRRERNYRAAHGGYDRLPPPP+ SQ DTLPSKLRKLM+FTS R QESE VSED+
Sbjct: 1   MGGKGMRRRERNYRAAHGGYDRLPPPPDTSQADTLPSKLRKLMSFTSSRSQESE-VSEDI 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSD-DDVQSKSSEKKNKKR 120
           QRKRKR+AV+TEKK + K+A G+SD+KS+ NGGNSQMPQ TGSD DDVQSKSSEKKNKKR
Sbjct: 61  QRKRKRDAVNTEKKSNQKDASGRSDVKSKANGGNSQMPQRTGSDVDDVQSKSSEKKNKKR 120

Query: 121 KKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDV 180
           K+KQVTDLRFED  E S+RRLKKRER++KY EAKKNKHKK KT+E LDFPRHEKIKFGDV
Sbjct: 121 KRKQVTDLRFEDSLEESSRRLKKRERRKKYQEAKKNKHKKAKTEEVLDFPRHEKIKFGDV 180

Query: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPA 234
           VEAPLKL AVPKAFKSAQVASQERKRLQAI EYRNRKGWTSRPG+QIPSMTI+PA
Sbjct: 181 VEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTIAPA 234

[Close]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL
Match: A0A1S4E2Q2 (LOW QUALITY PROTEIN: protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103499034 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.09e-122
Identity = 196/235 (83.40%), Postives = 214/235 (91.06%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKG+RRRERNYRAAHGGYDRLPPPP+ SQ DTLPSKLRKLM+FTS R QESE VSED+
Sbjct: 1   MGGKGMRRRERNYRAAHGGYDRLPPPPDTSQADTLPSKLRKLMSFTSSRSQESE-VSEDL 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSD-DDVQSKSSEKKNKKR 120
           QRKRKR+A +TEKK + K+A G+SD+KS+ NGGNSQMPQ TGSD DDVQSKSSEKKNKKR
Sbjct: 61  QRKRKRDAFNTEKKSNQKDASGRSDVKSKANGGNSQMPQRTGSDIDDVQSKSSEKKNKKR 120

Query: 121 KKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDV 180
           K+KQVTDLRFED  E S+RRLKKRER++KY EAKKNKHKK KT+E LDFPRHE IKFGDV
Sbjct: 121 KRKQVTDLRFEDSLEESSRRLKKRERRKKYQEAKKNKHKKAKTEEVLDFPRHEXIKFGDV 180

Query: 181 VEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPA 234
           VEAPLKL AVPKAFKSAQVASQERKRLQAI EYRNRKGWTSRPG+QIPSMTI+PA
Sbjct: 181 VEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTIAPA 234

[Close]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL
Match: A0A6J1DLN3 (DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111021190 PE=4 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.40e-120
Identity = 188/235 (80.00%), Postives = 213/235 (90.64%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEKVSEDV 60
           MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLM+FTS R QESEKV +D 
Sbjct: 1   MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDT 60

Query: 61  QRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKRK 120
           Q KRK+EAV +EKK HP++A G++D+K+EGNGGNS+MPQLT S DD+QSKSSEKK+KKRK
Sbjct: 61  QDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQLTDSGDDMQSKSSEKKDKKRK 120

Query: 121 KKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVV 180
           +KQV DLRFE+L+  SNRRLKKRER++K+ EAKKNKHKK KT+EDLDFPRHEKIKFGDVV
Sbjct: 121 RKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVV 180

Query: 181 EAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235
           EAPLKL AVPKAFKSAQVASQERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Sbjct: 181 EAPLKLVAVPKAFKSAQVASQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV 235

[Close]

BLAST of Csor.00g256910 vs. TAIR 10
Match: AT2G45520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). )

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-45
Identity = 114/232 (49.14%), Postives = 147/232 (63.36%), Query Frame = 0


Query: 1   MGGKGLRRRERNYRAAHGGYDRLPPPPNASQVDTLPSKLRKLMTFTSPRPQESEK-VSED 60
           MGGKG +RRE+NY AAHGG  RLPPPP+ S+ D +PS LR LM +TSP P +S K V E 
Sbjct: 1   MGGKGKKRREKNYLAAHGGPARLPPPPDRSKQDDVPSTLRILMNYTSPSPHDSTKQVVEK 60

Query: 61  VQRKRKREAVDTEKKYHPKEAPGKSDLKSEGNGGNSQMPQLTGSDDDVQSKSSEKKNKKR 120
            ++ +K E V                              +  ++ D      EKK KKR
Sbjct: 61  KEKLKKAEVV------------------------------VPATESDGDDSVVEKKKKKR 120

Query: 121 KKKQVTDLRFEDLSENSNRRLKKRERQRKYHEAKKNKHKKGKTDEDL--DFPRHEKIKFG 180
           K+ Q+TDLRFE+     + R K++ER++KY EAKK K  KGKT++ L  +FP+HE+I+FG
Sbjct: 121 KRNQMTDLRFENELAEIDGRSKRKERKKKYWEAKKQKKNKGKTEDTLRENFPKHEQIRFG 180

Query: 181 DVVEAPLKLTAVPKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSM 230
           DVV+APLKL  VPKA KS   ASQER RLQAI  YR+RKGWT+RPG+ IP++
Sbjct: 181 DVVQAPLKLAVVPKARKSTLSASQERLRLQAIDAYRSRKGWTARPGVPIPAV 202

The following BLAST results are available for this feature:

BLAST of Csor.00g256910 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g256910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574789.1	6.46e-156	100.00	hypothetical protein SDJN03_25428, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959194.1	6.20e-154	98.72	uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959195.1 unchar...	[more]
XP_023547832.1	1.46e-152	97.87	protein PXR1 [Cucurbita pepo subsp. pepo] >XP_023547833.1 protein PXR1 [Cucurbit...	[more]
KAG7013369.1	9.33e-151	92.49	hypothetical protein SDJN02_23533 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023006093.1	4.15e-150	97.03	probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima] >XP_023006...	[more]

BLAST of Csor.00g256910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3V7	3.00e-154	98.72	uncharacterized protein LOC111460256 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1KUZ8	2.01e-150	97.03	probable H/ACA ribonucleoprotein complex subunit 4 OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7TEP7	2.19e-124	84.26	Protein PXR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002900 ...	[more]
A0A1S4E2Q2	2.09e-122	83.40	LOW QUALITY PROTEIN: protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103499034 PE=4 S...	[more]
A0A6J1DLN3	1.40e-120	80.00	DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111021190 PE=4 SV=1	[more]

BLAST of Csor.00g256910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45520.1	5.4e-45	49.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..167
None	No IPR available	PANTHER	PTHR37218	COILED-COIL PROTEIN	coord: 1..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g256910.m01	Csor.00g256910.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity