Csor.00g255590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g255590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	lysophospholipid acyltransferase LPEAT2-like
Location	Csor_Chr06: 8485387 .. 8486435 (+)
RNA-Seq Expression	Csor.00g255590
Synteny	Csor.00g255590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCACGATCTCACCTCGCCGCTGCTCCCCGCTGAGCCCTCAGACGGCGTCGAGGTGATGCTCAGAATCGAAGACGACGACGGCGGTCCACCGGAGCAGATCAATAATCAGAACGGGAACCATCACGATCATACTCGATTATACTGTCGCAATCCTTTTGCTTTTCTTGGCTCTGATGGATTCTCCGTTCCCGAGTCGACAACGGTCGATCCGTTTCGGAATAACACGCCGAGTATCGATGGGGTTTATGAGTGGGTTAAGATTGTGGTTTGCATACCTATTGCGCTTGTACGTCTTGTTCTGTTTGGGCTATGTCTTTTGGTTGGATATTTAGCCACTAAGACGGCGCTTCACGGGTGGAAGGATAAGGAGAATCCGATGCCGAAGTGGAGGCGTAGGCTTATGGGAGTTACGAGGCTTTGCGGGCGGTGTATTCTCTTTTCTTTTGGGTGAGACATGCTTCTGGTTCTTGTTTGAATTTCATCTATTTATACTGAATTTCAATTTTGCTGTGTTTGTTGGAATTCTTAACGACGACATGTCCTTATTCAATTGCTGCTGTATTTGCATTGTAGCTGTACTATCATCTCTCGATGTGTTGGCTATTTTGTATGTTATCTAAACTTCATTTGAAGATTATTGCAAGTTATTGGAATGAGTAGTGGATTAATAAATTTCTGAAATAAAAATGACTAGAATCCTCTCGTCAATTCCTAAAATCTTACTGGATGTCTTTGAATTTATTAATACTTTCAAGCAAAACATAAGAGGAAAAGGAAAATTTACTGAAGTAGAAGGGGTTTTACGATTTGTTAGAATGATAGTTCATGATGCCAAATATTTGCCATTTTTGGTGGAAAAAAATTTCTTGCACGGGTTCTGTTTGATTGGTTATCTCTTCTGTTGAGCGCAGATTATGTTAATTTATATATAATGTTGTTTGTCTACTACTATTTTTCTAATTTAGTGATAATCTTTTGTTTGTCTTTCTTCCTCTGCTTCAGATATCAATGGATAACAAGAAAAGGGAAGCCTGCTCCTAG

mRNA sequence

ATGGCGGACCACGATCTCACCTCGCCGCTGCTCCCCGCTGAGCCCTCAGACGGCGTCGAGGTGATGCTCAGAATCGAAGACGACGACGGCGGTCCACCGGAGCAGATCAATAATCAGAACGGGAACCATCACGATCATACTCGATTATACTGTCGCAATCCTTTTGCTTTTCTTGGCTCTGATGGATTCTCCGTTCCCGAGTCGACAACGGTCGATCCGTTTCGGAATAACACGCCGAGTATCGATGGGGTTTATGAGTGGGTTAAGATTGTGGTTTGCATACCTATTGCGCTTGCTTATGGGAGTTACGAGGCTTTGCGGGCGGTGTATTCTCTTTTCTTTTGGATATCAATGGATAACAAGAAAAGGGAAGCCTGCTCCTAG

Coding sequence (CDS)

ATGGCGGACCACGATCTCACCTCGCCGCTGCTCCCCGCTGAGCCCTCAGACGGCGTCGAGGTGATGCTCAGAATCGAAGACGACGACGGCGGTCCACCGGAGCAGATCAATAATCAGAACGGGAACCATCACGATCATACTCGATTATACTGTCGCAATCCTTTTGCTTTTCTTGGCTCTGATGGATTCTCCGTTCCCGAGTCGACAACGGTCGATCCGTTTCGGAATAACACGCCGAGTATCGATGGGGTTTATGAGTGGGTTAAGATTGTGGTTTGCATACCTATTGCGCTTGCTTATGGGAGTTACGAGGCTTTGCGGGCGGTGTATTCTCTTTTCTTTTGGATATCAATGGATAACAAGAAAAGGGAAGCCTGCTCCTAG

Protein sequence

MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGSDGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALAYGSYEALRAVYSLFFWISMDNKKREACS

Homology

[Close]

BLAST of Csor.00g255590 vs. ExPASy Swiss-Prot
Match: Q8S8S2 (Lysophospholipid acyltransferase LPEAT2 OS=Arabidopsis thaliana OX=3702 GN=LPEAT2 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.6e-14
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGP------PEQINNQ--NGNHHDHTRLYCR 60
           MAD DL+SPL+  + SD  EV++ I DDD         P  ++ +   G   DH      
Sbjct: 1   MADPDLSSPLIHHQSSDQPEVVISIADDDDDESGLNLLPAVVDPRVSRGFEFDHL----- 60

Query: 61  NPFAFLGSDGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 99
           NP+ FL      V   TTVDPFRNNTP + G+YE +K+V+C+PIAL
Sbjct: 61  NPYGFLSESEPPVLGPTTVDPFRNNTPGVSGLYEAIKLVICLPIAL 101

[Close]

BLAST of Csor.00g255590 vs. NCBI nr
Match: KAG6597177.1 (Lysophospholipid acyltransferase LPEAT2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270 bits (690), Expect = 1.81e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
           MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS
Sbjct: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60

Query: 61  DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALAYGSYEALRAVYSLFFWISMDN 120
           DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALAYGSYEALRAVYSLFFWISMDN
Sbjct: 61  DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALAYGSYEALRAVYSLFFWISMDN 120

Query: 121 KKREACS 127
           KKREACS
Sbjct: 121 KKREACS 127

[Close]

BLAST of Csor.00g255590 vs. NCBI nr
Match: KAG7028643.1 (Lysophospholipid acyltransferase LPEAT2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (533), Expect = 1.21e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98
          DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98

[Close]

BLAST of Csor.00g255590 vs. NCBI nr
Match: XP_022943196.1 (lysophospholipid acyltransferase LPEAT2-like [Cucurbita moschata])

HSP 1 Score: 207 bits (527), Expect = 1.08e-61
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDH RLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHPRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98
          DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98

[Close]

BLAST of Csor.00g255590 vs. NCBI nr
Match: XP_023539653.1 (lysophospholipid acyltransferase LPEAT2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204 bits (519), Expect = 1.66e-60
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEV+LRIEDDDGGPPEQINNQNGNHH HTRLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVILRIEDDDGGPPEQINNQNGNHHGHTRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
          DGFSVPESTTVDPFRNNTPSI GVYEWVKIVVCIPIALA
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIGGVYEWVKIVVCIPIALA 99

[Close]

BLAST of Csor.00g255590 vs. NCBI nr
Match: XP_022974118.1 (lysophospholipid acyltransferase LPEAT2-like [Cucurbita maxima])

HSP 1 Score: 199 bits (506), Expect = 1.38e-58
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEV+LRIEDD G PPEQINNQNGN+HDHTRLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVILRIEDDGGNPPEQINNQNGNNHDHTRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
          DGFSVPESTTVDPFRNNTPSI GVYEWVKIVVCIPIALA
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIGGVYEWVKIVVCIPIALA 99

[Close]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL
Match: A0A6J1FR18 (lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita moschata OX=3662 GN=LOC111447995 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 5.25e-62
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDH RLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHPRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98
          DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 98

[Close]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL
Match: A0A6J1IFA2 (lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita maxima OX=3661 GN=LOC111472725 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 6.69e-59
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTSPLLPAEPSDGVEV+LRIEDD G PPEQINNQNGN+HDHTRLYCRNPFAFLGS
Sbjct: 1  MADHDLTSPLLPAEPSDGVEVILRIEDDGGNPPEQINNQNGNNHDHTRLYCRNPFAFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
          DGFSVPESTTVDPFRNNTPSI GVYEWVKIVVCIPIALA
Sbjct: 61 DGFSVPESTTVDPFRNNTPSIGGVYEWVKIVVCIPIALA 99

[Close]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL
Match: A0A5A7U681 (Lysophospholipid acyltransferase LPEAT2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002330 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.05e-48
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDD-----GGPPEQINNQNGNHHDHTRLYCRNPF 60
           M DHDL SPLLPA+PSD  +V+LRIEDDD     G PPEQINNQNGNHHD  RL   NP+
Sbjct: 1   MTDHDLVSPLLPAQPSDRADVILRIEDDDKDGDGGAPPEQINNQNGNHHD-PRLCFTNPY 60

Query: 61  AFLGSDGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
            F+GS+GFSVPE+TTVDPFRNNTP +DGVYEWVKIVVCIPIALA
Sbjct: 61  GFIGSNGFSVPETTTVDPFRNNTPCVDGVYEWVKIVVCIPIALA 103

[Close]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL
Match: A0A6J1EC68 (lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita moschata OX=3662 GN=LOC111431872 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.25e-48
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTS LLPAE SD V+V+LRIEDDDGGPP QINNQNGNHHD  RL   NP+ FLGS
Sbjct: 1  MADHDLTSSLLPAESSDRVDVILRIEDDDGGPPVQINNQNGNHHD-PRLCFSNPYGFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
          DGFSVPE TTVDPFRNNTPSIDGVYEWVKIVVCIPIALA
Sbjct: 61 DGFSVPEMTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 98

[Close]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL
Match: A0A6J1IYT0 (lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita maxima OX=3661 GN=LOC111479688 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 2.57e-47
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1  MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGPPEQINNQNGNHHDHTRLYCRNPFAFLGS 60
          MADHDLTS LLPAE SD V+V+LRIEDDDG PP QINNQNGNHHD  RL   NP+ FLGS
Sbjct: 1  MADHDLTSSLLPAESSDRVDVILRIEDDDGVPPVQINNQNGNHHD-PRLCFSNPYGFLGS 60

Query: 61 DGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 99
          DGFSVPE TTVDPFRNNTPSIDGVYEWVKIVVCIPIALA
Sbjct: 61 DGFSVPEMTTVDPFRNNTPSIDGVYEWVKIVVCIPIALA 98

[Close]

BLAST of Csor.00g255590 vs. TAIR 10
Match: AT2G45670.1 (calcineurin B subunit-related )

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-15
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGP------PEQINNQ--NGNHHDHTRLYCR 60
           MAD DL+SPL+  + SD  EV++ I DDD         P  ++ +   G   DH      
Sbjct: 1   MADPDLSSPLIHHQSSDQPEVVISIADDDDDESGLNLLPAVVDPRVSRGFEFDHL----- 60

Query: 61  NPFAFLGSDGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 99
           NP+ FL      V   TTVDPFRNNTP + G+YE +K+V+C+PIAL
Sbjct: 61  NPYGFLSESEPPVLGPTTVDPFRNNTPGVSGLYEAIKLVICLPIAL 101

[Close]

BLAST of Csor.00g255590 vs. TAIR 10
Match: AT2G45670.2 (calcineurin B subunit-related )

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-15
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MADHDLTSPLLPAEPSDGVEVMLRIEDDDGGP------PEQINNQ--NGNHHDHTRLYCR 60
           MAD DL+SPL+  + SD  EV++ I DDD         P  ++ +   G   DH      
Sbjct: 1   MADPDLSSPLIHHQSSDQPEVVISIADDDDDESGLNLLPAVVDPRVSRGFEFDHL----- 60

Query: 61  NPFAFLGSDGFSVPESTTVDPFRNNTPSIDGVYEWVKIVVCIPIAL 99
           NP+ FL      V   TTVDPFRNNTP + G+YE +K+V+C+PIAL
Sbjct: 61  NPYGFLSESEPPVLGPTTVDPFRNNTPGVSGLYEAIKLVICLPIAL 101

The following BLAST results are available for this feature:

BLAST of Csor.00g255590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8S2	7.6e-14	43.40	Lysophospholipid acyltransferase LPEAT2 OS=Arabidopsis thaliana OX=3702 GN=LPEAT...	[more]

BLAST of Csor.00g255590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597177.1	1.81e-91	100.00	Lysophospholipid acyltransferase LPEAT2, partial [Cucurbita argyrosperma subsp. ...	[more]
KAG7028643.1	1.21e-62	100.00	Lysophospholipid acyltransferase LPEAT2, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022943196.1	1.08e-61	98.98	lysophospholipid acyltransferase LPEAT2-like [Cucurbita moschata]	[more]
XP_023539653.1	1.66e-60	96.97	lysophospholipid acyltransferase LPEAT2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974118.1	1.38e-58	94.95	lysophospholipid acyltransferase LPEAT2-like [Cucurbita maxima]	[more]

BLAST of Csor.00g255590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FR18	5.25e-62	98.98	lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IFA2	6.69e-59	94.95	lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7U681	1.05e-48	75.96	Lysophospholipid acyltransferase LPEAT2 isoform X2 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1EC68	1.25e-48	85.86	lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IYT0	2.57e-47	84.85	lysophospholipid acyltransferase LPEAT2-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Csor.00g255590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45670.1	5.4e-15	43.40	calcineurin B subunit-related	[more]
AT2G45670.2	5.4e-15	43.40	calcineurin B subunit-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23063	PHOSPHOLIPID ACYLTRANSFERASE	coord: 37..98
None	No IPR available	PANTHER	PTHR23063:SF46	LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED	coord: 37..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g255590.m01	Csor.00g255590.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006644	phospholipid metabolic process
biological_process	GO:0000038	very long-chain fatty acid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0071618	lysophosphatidylethanolamine acyltransferase activity