Csor.00g255100 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g255100
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	late embryogenesis abundant protein 6-like
Location	Csor_Chr06: 8795577 .. 8796480 (-)
RNA-Seq Expression	Csor.00g255100
Synteny	Csor.00g255100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTAAACACGTAAACCCGTTCATGTTAGTATTGCATTTGAAAATGAATTGACATTTTTTTACCGTTAAATGTGTACGAGAAAGAAACTACCTGAGTAATTTTCCATTTAACTCTTCATCCACTTAGAAGAACCAAACAACAATCGATCACTAGCTTAACGTGAGATTACAAATCAGTTAAAGTGGGGAATGAAACATTATTTATAAGAGTTAAAGCGGACAATATTTGCTAGTGGTGGTCTTGGACAGTTACAAATGGGCTCAGAGCCAGACACCGAGCGATATGCTAATAAAGACGTTGAGGAATTGTGAGATCTCATATCAATTGGAGTGGGGAACGAAACATGAATTACAAATAATATGTTTAGCTCAACTCAAGCTACTCAATTTTCACGCTCTGTAGTTCAAATCTAAGAAATGTTTTAAAAAGCCAAAATTTAGCATACAAATGAGACGTTTTATTAAGGAAAAAATGAAACTCGTAGTAAAAAAGACGTGTACGGTTTTAAAAAATTTTACGGAGACGAAAATTTAGGATTTGTACGAAATGGTTGAGAATTGTAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAATAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG

mRNA sequence

ATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAATAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG

Coding sequence (CDS)

ATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAATAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG

Protein sequence

MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYANNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL

Homology

[Close]

BLAST of Csor.00g255100 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 1  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLH 60
          MQ+ K+K+ DM+   K K    +AKA+EK E+ +A  K   E+AH+ R AKEAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VARAGMIAENEMAMYANNPPTSFVP 81
          +A+A    +  MA  ++   T   P
Sbjct: 61 MAKAAHAEDKLMAKQSHYHVTDHGP 85

[Close]

BLAST of Csor.00g255100 vs. NCBI nr
Match: KAG6597226.1 (Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (527), Expect = 4.71e-67
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG
Sbjct: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60

Query: 61  MIAENEMAMYANNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL 113
           MIAENEMAMYANNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL
Sbjct: 61  MIAENEMAMYANNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL 113

[Close]

BLAST of Csor.00g255100 vs. NCBI nr
Match: KAG7028698.1 (Late embryogenesis abundant protein 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205 bits (521), Expect = 3.87e-66
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG
Sbjct: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60

Query: 61  MIAENEMAMYANNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL 113
           MIAENEMAMYA NPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL
Sbjct: 61  MIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASKKLL 113

[Close]

BLAST of Csor.00g255100 vs. NCBI nr
Match: XP_022974150.1 (late embryogenesis abundant protein 6-like [Cucurbita maxima])

HSP 1 Score: 180 bits (456), Expect = 2.79e-56
Identity = 102/109 (93.58%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 11  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMY 70
           MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA Y
Sbjct: 1   MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMATY 60

Query: 71  ANNPPTSFVPSAAA------NISMASGMALDGTPCTIYMAGTPASKKLL 113
           ANNPPTSFVPSAAA      NISMASGMALDGTPCTIYMAGTPASKKLL
Sbjct: 61  ANNPPTSFVPSAAAAAAAAANISMASGMALDGTPCTIYMAGTPASKKLL 109

[Close]

BLAST of Csor.00g255100 vs. NCBI nr
Match: XP_023538811.1 (late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179 bits (453), Expect = 7.99e-56
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 11  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMY 70
           MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMY
Sbjct: 1   MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMY 60

Query: 71  ANNPPTSFVPS------AAANISMASGMALDGTPCTIYMAGTPASKKLL 113
           ANNPPTSFVPS      AAANISMASG+ +DGTPCTIYMAGTPASKKLL
Sbjct: 61  ANNPPTSFVPSDAAAAAAAANISMASGLTMDGTPCTIYMAGTPASKKLL 109

[Close]

BLAST of Csor.00g255100 vs. NCBI nr
Match: XP_008438228.1 (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK17488.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 4.96e-39
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYANNPPTSFV--------PSAAANISMASGMALDGTPCTIYMAG--TPASK 113
           M AE EMA YA+    +FV        P  +AN+ +A GM + G P T+ MAG  +PA+K
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

[Close]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL
Match: A0A6J1ID82 (late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111472740 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.35e-56
Identity = 102/109 (93.58%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 11  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMY 70
           MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA Y
Sbjct: 1   MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMATY 60

Query: 71  ANNPPTSFVPSAAA------NISMASGMALDGTPCTIYMAGTPASKKLL 113
           ANNPPTSFVPSAAA      NISMASGMALDGTPCTIYMAGTPASKKLL
Sbjct: 61  ANNPPTSFVPSAAAAAAAAANISMASGMALDGTPCTIYMAGTPASKKLL 109

[Close]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL
Match: A0A5A7U624 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003530 PE=3 SV=1)

HSP 1 Score: 137 bits (344), Expect = 2.40e-39
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYANNPPTSFV--------PSAAANISMASGMALDGTPCTIYMAG--TPASK 113
           M AE EMA YA+    +FV        P  +AN+ +A GM + G P T+ MAG  +PA+K
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

[Close]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL
Match: A0A1S3AWI7 (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=3 SV=1)

HSP 1 Score: 137 bits (344), Expect = 2.40e-39
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYANNPPTSFV--------PSAAANISMASGMALDGTPCTIYMAG--TPASK 113
           M AE EMA YA+    +FV        P  +AN+ +A GM + G P T+ MAG  +PA+K
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

[Close]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL
Match: A0A0A0L6I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1)

HSP 1 Score: 128 bits (322), Expect = 5.02e-36
Identity = 78/121 (64.46%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAV+EKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYANNPPTSFVPSAAA------NISMASGMALDGTPCTIYMAGTPA--SKKL 113
           M AE EMA YA+    +FV           ++ +A GM + G P T+ MAG P+  +KKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

[Close]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL
Match: A0A6J1CZ67 (late embryogenesis abundant protein 6-like OS=Momordica charantia OX=3673 GN=LOC111016115 PE=3 SV=1)

HSP 1 Score: 126 bits (316), Expect = 3.43e-35
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAG 60
           MQAVK+KLHDMS +RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG
Sbjct: 1   MQAVKDKLHDMSAMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MIAENEMAMYANNPPTSFV-PSAAANISMAS-GMALDGTPCTIYMAGTPASKKLL 113
             AE EMA YA+  PT+FV P    N++ A   + + G P T+ M GT   KK+L
Sbjct: 61  EKAEREMAKYAHTHPTAFVAPGGTTNLAAAPVDVTMVGPPGTVDMTGTVPVKKML 115

[Close]

BLAST of Csor.00g255100 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 1  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLH 60
          MQ+ K+K+ DM+   K K    +AKA+EK E+ +A  K   E+AH+ R AKEAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VARAGMIAENEMAMYANNPPTSFVP 81
          +A+A    +  MA  ++   T   P
Sbjct: 61 MAKAAHAEDKLMAKQSHYHVTDHGP 85

The following BLAST results are available for this feature:

BLAST of Csor.00g255100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	1.7e-04	41.18	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of Csor.00g255100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597226.1	4.71e-67	100.00	Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7028698.1	3.87e-66	99.12	Late embryogenesis abundant protein 6 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022974150.1	2.79e-56	93.58	late embryogenesis abundant protein 6-like [Cucurbita maxima]	[more]
XP_023538811.1	7.99e-56	91.74	late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_008438228.1	4.96e-39	67.48	PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 lat...	[more]

BLAST of Csor.00g255100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID82	1.35e-56	93.58	late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7U624	2.40e-39	67.48	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AWI7	2.40e-39	67.48	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]
A0A0A0L6I7	5.02e-36	64.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1	[more]
A0A6J1CZ67	3.43e-35	66.09	late embryogenesis abundant protein 6-like OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Csor.00g255100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	1.2e-05	41.18	Late embryogenesis abundant protein, group 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..51
None	No IPR available	PANTHER	PTHR33493:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 1..84
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..65 e-value: 7.4E-16 score: 58.5
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g255100.m01	Csor.00g255100.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy