Csor.00g254950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g254950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 8897144 .. 8899171 (-)
RNA-Seq Expression	Csor.00g254950
Synteny	Csor.00g254950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCATCTCAATTGAAGGGGAGAAAAGAAATGATCCGTCTACAGCTAGACTGTAAGAGCTTCAATTTTTTACGCCTTAAAATGCATGGAAATTTTGAATGATAGCTAGTCCAACTGATCTTTTTAATATATTTGACATTTAAAAAAAAATATTCTCAACTTTGGATACAAAATTCTTGTACTTCTAATAGATACCAGTCCAAATAGACTAGATTTTACCGAGAATTTAATAAGATTATCAACCTATTATGATACTTTTTTTTTTATGTTTAGAGATCTATTAGATATAAGTTTAACTTCAGCTCTTAAGAGAGTGGGTAAATAGATGAGTTAAAGAGACCTTAGAAAGACTATAAATCGGATCAACTTTTGATGTAGAACGTTCAAAAACTATCCATCTTCTAGCAAACAATTAAGGCTTGCCTTGCAATTAGGAGAGCAATTTGAATGAATATGAATGCATATAGGTAGAAAAGTTTGAGACATTGGTGGTTGTTATTAGATGGATACGATTGGTTAAACGAATAAGATACCATTGTCCTTAATGGCATCAATGACAATCTCAATTTTGCCTTCAATTTTTGCACTCTTTGGAGGGTCGTAAGAGATTACAAATACATCAGCTTCTTTACATCTCTCAGCAATTAGGTTCCCAATAATCCGACACGCATTGTCATCAGTGGGCGATGGCAATGAATACCTTAAATCCCTGCAATTGGTGCTTGCTGCCGACACCACTTTGCTTGTTCCTCGATGCATCACTTTGGCATGTATGAACCTCCTTGAAAAGTAAACATCCAAAACAAATGGTCTCATGTACATATCTGTTCTTTGCTTCCATGATTTCCTGTTCGGTCTTTTTGAAGTTTCTCCTTTAGATCTTCGTGTCCAGGCTGCTTGAATGATAGAATTCTACAAAATGAAAACATGTCGAAACCTTAGATAAAATGTTCTACTCTTACGAAGTACGACATTGTCCTCCAACATGTGGTTTTTAGACATTTATTCGTAAAGATATCCACATTTCAAAGGATCAAATGTTAGGAATTACGGACCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTAACTTTGATTTTTGTGTCCCTAAAAGGCTTCATACCAATGAAAATATTTTCCTTACTTGTAAACTCATGATCAACTCCTTAATTAGCCAACATGGGACTCCTTCCCAACAATCCTCGACACGAATAACTTACCCTCCTAAAAGATAAACCTATCATTCTGATCAGGAATCCTCAAACACGAATGAATGATTAACGCTGAAAAAGAATTATAGTTTCCATTCTTCCACCTTTTCACTCCGCCCATTGCTTTTGTTCATTTCAGTACCCATAATTCTATTCTATTGGGCTAGAGAACATCTCATCCTATATTGAAAACCCCCTTTTCAATTATGAAAACAACAATCTACTATCATTTCTTCATCATCTATTGAGATCTTCTAAGAATTTAAGAATTAATAGCAAAGCAAATAGTATCTTTTTAGCCGATCTCTATCTCATTCATTAAGCATTTCTTGAGATTTCAGGAGCAACTGTGGAAGTGGAAGCTTGGAATCAAAGTTTGGGTGTTCTAAAAGCTTAGGGAGAACAACCCAGATTCCAACTCCTTAACTAACTCTCAACTATTCAATTACAGTTTCGACTAGACATTCCGTCGAACACCTTGGCTGCACGATCCCAAACGCCATCCCTCTCAAAAAGAAGTGGAAGGCAAGGATTCGAATGCTATTTTATTCAATTTCATTCCCTCGTCAAAACAAGCACCAACAACTTCACAGATTTTTCGCGATGGGTATCGTAGAATTTCCATCATTCTTCGAAGTCGAGATTTTATTTTTATGAGATAATTTTTTTTTTTCTTTGCAGAAAGAAACTGGGGTAAAGAAGAGAAAACGTACTCGATTGTGCGTTGAAGGAGAAGGAGGTTTAATGGCGATTGAGAGCTTGGAAAACGAAGAAGGCCATGAAAGAGAAGTAGTAGGTTTTTGA

mRNA sequence

ATGCTCATCTCAATTGAAGGGGAGAAAAGAAATGATCCGTCTACAGCTAGACTGAGCAACTGTGGAAGTGGAAGCTTGGAATCAAAACATTCCGTCGAACACCTTGGCTGCACGATCCCAAACGCCATCCCTCTCAAAAAGAAGTGGAAGAAAGAAACTGGGGTAAAGAAGAGAAAACGTACTCGATTGTGCGTTGAAGGAGAAGGAGGTTTAATGGCGATTGAGAGCTTGGAAAACGAAGAAGGCCATGAAAGAGAAGTAGTAGGTTTTTGA

Coding sequence (CDS)

ATGCTCATCTCAATTGAAGGGGAGAAAAGAAATGATCCGTCTACAGCTAGACTGAGCAACTGTGGAAGTGGAAGCTTGGAATCAAAACATTCCGTCGAACACCTTGGCTGCACGATCCCAAACGCCATCCCTCTCAAAAAGAAGTGGAAGAAAGAAACTGGGGTAAAGAAGAGAAAACGTACTCGATTGTGCGTTGAAGGAGAAGGAGGTTTAATGGCGATTGAGAGCTTGGAAAACGAAGAAGGCCATGAAAGAGAAGTAGTAGGTTTTTGA

Protein sequence

MLISIEGEKRNDPSTARLSNCGSGSLESKHSVEHLGCTIPNAIPLKKKWKKETGVKKRKRTRLCVEGEGGLMAIESLENEEGHEREVVGF

Homology

[Close]

BLAST of Csor.00g254950 vs. NCBI nr
Match: KAG6597241.1 (hypothetical protein SDJN03_10421, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (460), Expect = 1.47e-57
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLISIEGEKRNDPSTARLSNCGSGSLESKHSVEHLGCTIPNAIPLKKKWKKETGVKKRKR 60
          MLISIEGEKRNDPSTARLSNCGSGSLESKHSVEHLGCTIPNAIPLKKKWKKETGVKKRKR
Sbjct: 1  MLISIEGEKRNDPSTARLSNCGSGSLESKHSVEHLGCTIPNAIPLKKKWKKETGVKKRKR 60

Query: 61 TRLCVEGEGGLMAIESLENEEGHEREVVGF 90
          TRLCVEGEGGLMAIESLENEEGHEREVVGF
Sbjct: 61 TRLCVEGEGGLMAIESLENEEGHEREVVGF 90

The following BLAST results are available for this feature:

BLAST of Csor.00g254950 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g254950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597241.1	1.47e-57	100.00	hypothetical protein SDJN03_10421, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g254950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g254950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g254950.m01	Csor.00g254950.m01	mRNA