Csor.00g254930 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g254930
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 8902130 .. 8905004 (-)
RNA-Seq Expression	Csor.00g254930
Synteny	Csor.00g254930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAACCGGTAGAACTCAACAAGTAGAGAGCTGGAAAAAAACAAGTGATCAGATTCTTCATGTTTGCTGTAAAGCAAAAGAACGCGATAATACATATTCCGTTGATCTAAACATTCTATCAGAATCATCATTGATATTTTTCTCCCTGAGTTGATCGCGAAGACAGATGATTTCTAAGAGTTCAATAACTAAATTCCAATTTCTAAAGAATTTATCACGGAGATAATATAAAATTATAATTTACAAGCAACGTTGCACAAATATTCACAATGTTAGCACTACTATCAACGAAGATGAGAAAGAAAAAAATTAAAAATTAAAAACACCGACGCCGTTGGCCAAAGGAAATGCGATCCAGAACTTAAAGACATCGCAGTTCATTCACGAGTGTTTAAAGTTCGATGGCCTGGAAAATGACAGCAACAGATTTTCTCAAGCGAGTTACTCAAATCAAACCCATCGCAAAAGAATGACAAAGATAAAGATTGTCTCGAGATCAAAATTTTCTATTCTCCACTCGTTTTCAGTAATTCAGACGGCAAATACAGCGCGATACATGCTTGGATCCAAGCGGAAACAGCAAATCGGCAAATCGGCAAAATGTAACGACCAATTCAATCGAAAATTTGGAAAGCAATACAGAAATCAAACGAGAGTAATGCAATTGAAATTCTTCTGATATGAAAACAAGAAATCGAAATTCATACCGTCGAGAGAAGAAAGCGCGCGCGGGAGAGGAGGGATATCGCAGGAGGAAGAGAAGGGATCGACTGTGCCAAAGCCACTGAAAGCTTTTTTCTTTTTTCATATTCATTTTATTATTTTATTTTTTCACGTCTAATTTATTATTATTTTTAAAATAATGTATTTCACCTCTAAGAGCTTTCATCATATACACTTAATATACTTTGGGCTTTCCTTTTCGAGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGGAAGATTTCCACACCCTTCTAAATAGTGGTTTGTTATCCTCCCCAACCAATGTGAGACATCACAATCCACCCGCCTTCGGGGCCCAGCGTCCTCACTGGCACTCTTTCCTTCCTCCAATCGATGTGAGACTGCCCCCAAATCCACCCCCTTTGGGGCTCAGTGTCCTTACTGGCACACCGCCTCGTGTCTACTCCCCTTCGGGGAACAGCGAGAAGGCTTACACATCGTTCGATGTCTAGCTCTGATACAATTTGTAACGACCCAGATCCACCACTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTTCACGCTTCCCCTACCTGTGATTTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCTCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGGAAGCTCCCTTGTCCTCACTTCGCCCTGTGGACATATCTTTGGGTTGAGATGGTTCGGGTCAAATTTTTTTGAAACTAACTGCCCTAACACGACTCAATTCAATTCGGTTTGGCTACTCTCACCCATATTTGGTAAGCTATATCTTTCGTAAGGTCGACCATTCAATACTCAATATCTATAAAATTTAGACCTTTGTAGAAATAATAAAATAAAATAAAAATAAATAAAAATGTTGAGCTGGTCCAACTAAAAAGGTTTGAAATTGATATTAAATTAAAAAACGGAATAAAATTTTATAATTAAATTTACATTTATTTTAACAATTAATTTCCTCATAGTCAAAACTATATTTAAATGCGATCCAATCGCCCCTTACAATTTACTCAAAAGAAGATAATAAAGGAAGACCATAGCCGTTGCAATTACGCGACCCTTAAAAAAAAAAAAATAACAATAATATAATAAGGTAGTGAAATGACATAAATACCCTCCACCGACCGTAACGCTCATTCTGAGGCAAAATTTACGTGCCAATTCTTACGGTCAATCCCTTCTCTATTTAAACCACCCACTCGTCCTCCGTTTGTTTCCGCGTTTTCCCTCGTCTTCTTCAGATCTCTCTCTCTCTCGATCTTTGGCGCGCTCCGTTTTCAACTGTAAGAATCAGAATCTTGCTCTCTTCTTTTTCGCCTTATATCTTTGTTAATTGCGTTACTTGTTGTTTGATCTCTGCATTGTCTTCTGTTTCCGCTTGAATTTTGTTGCGTTTATTTGTTGATTTGCTTGGTTTTGCTGCTACCGTTTGGATCCAGCCGTGTTTTTCTTCTGGTCTTGCGATTTCGTGTGGAGAATCGAGAAATCTTAGCTTTTGAGGCTTTTCTTGTGCTGTGTGGTTTTAAATTAGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTCTCTTAGATCTGTCTTTGAATTTATTTACCGCCACTTTTCTGGTAGGCTAAGAATGGAAAAATTGAGAATGAACTGCGAAGTCTTTACTTATGGCTTGCATGTTCTTTCGCCTGTTTGTTCTGTAAATGATGCTTATTGGCAGTACTAATTGTGTTATGAATGTTTAACAGTTGTGCATGTTTTTATTTCTGGATCCTAAATGCTTAGCTTATGTTTTTCGTGGTGTTTTCTTTGTTGAAATAAATTACTAAGGCCAGGCATGTCGGATCTGCAAAAAATCGATGAAAGCTAATATTTATATTAATGTTTTGAAGACTAAAGAGTTTTTGTTTTTTCTCCTCTTCTTTTCTATGTTCGAGAATCTAGAGGATATATAGACTAAGAAGATTTGATTGCATGTATCATTTAAGTTTTAACATGTTATGCTTTCAGCCTAATGTTCTTCCATGTTTATCTTGCCTGTCTCTCCTCCTTGCTTTAGTGCTGAAACCTGGTTTTGACATACTTTTATCTGGCTTCATGTAGTTAG

mRNA sequence

ATGTCGGAACCGCAACAGATTTTCTCAAGCGAGTTACTCAAATCAAACCCATCGCAAAAGAATGACAAAGATAAAGATTGTCTCGAGATCAAAATTTTCTATTCTCCACTCGTTTTCAGTAATTCAGACGGCAAATACAGCGCGATACATGCTTGGATCCAAGCGGAAACAGCAAATCGGCAAATCGGCAAAATATCTCTCTCTCTCTCGATCTTTGGCGCGCTCCGTTTTCAACTTTAG

Coding sequence (CDS)

ATGTCGGAACCGCAACAGATTTTCTCAAGCGAGTTACTCAAATCAAACCCATCGCAAAAGAATGACAAAGATAAAGATTGTCTCGAGATCAAAATTTTCTATTCTCCACTCGTTTTCAGTAATTCAGACGGCAAATACAGCGCGATACATGCTTGGATCCAAGCGGAAACAGCAAATCGGCAAATCGGCAAAATATCTCTCTCTCTCTCGATCTTTGGCGCGCTCCGTTTTCAACTTTAG

Protein sequence

MSEPQQIFSSELLKSNPSQKNDKDKDCLEIKIFYSPLVFSNSDGKYSAIHAWIQAETANRQIGKISLSLSIFGALRFQL

Homology

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BLAST of Csor.00g254930 vs. NCBI nr
Match: KAG6597243.1 (hypothetical protein SDJN03_10423, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (395), Expect = 5.53e-48
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSEPQQIFSSELLKSNPSQKNDKDKDCLEIKIFYSPLVFSNSDGKYSAIHAWIQAETANR 60
          MSEPQQIFSSELLKSNPSQKNDKDKDCLEIKIFYSPLVFSNSDGKYSAIHAWIQAETANR
Sbjct: 1  MSEPQQIFSSELLKSNPSQKNDKDKDCLEIKIFYSPLVFSNSDGKYSAIHAWIQAETANR 60

Query: 61 QIGKISLSLSIFGALRFQL 79
          QIGKISLSLSIFGALRFQL
Sbjct: 61 QIGKISLSLSIFGALRFQL 79

The following BLAST results are available for this feature:

BLAST of Csor.00g254930 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g254930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597243.1	5.53e-48	100.00	hypothetical protein SDJN03_10423, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g254930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g254930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g254930.m01	Csor.00g254930.m01	mRNA