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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGACCAGCGACGTCACGATACCGCCACCAATGTCGCCACTGACTCCTGCATTTTTTATAGCATTTCGCATCGAGTTCAGTATGCTCCCATATGTAGCTCCATGTCCGAGCTCTATCGCTTGGATGAAGCAGAAAGTCATGGCACCTGTCGATGTTATCTTTGACAGAGCCTGTGCCAGTTCAAGTAATTAGCTTGACATTAAAGCAATGCGATTGGGATCAAAAGAATTGTGGATTATGAAATGTAGTGTGACTTACAGATGTATCAGCAGAGGTCTGGTTATCATCACAGCCACTGAAAGAAATAACTTCTCCACCACTCGTTCCTTTCCATACTCCAGATCGCGGGCGATGGTCCTCCCATTTGTATTGTCCACTCCTATGA mRNA sequence ATGGTGACCAGCGACGTCACGATACCGCCACCAATGTCGCCACTGACTCCTGCATTTTTTATAGCATTTCGCATCGAGTTCAGTATGCTCCCATATGTAGCTCCATGTCCGAGCTCTATCGCTTGGATGAAGCAGAAAGTCATGGCACCTGTCGATGTTATCTTTGACAGAGCCTGTGCCAGTTCAAATGTATCAGCAGAGGTCTGGTTATCATCACAGCCACTGAAAGAAATAACTTCTCCACCACTCGTTCCTTTCCATACTCCAGATCGCGGGCGATGGTCCTCCCATTTGTATTGTCCACTCCTATGA Coding sequence (CDS) ATGGTGACCAGCGACGTCACGATACCGCCACCAATGTCGCCACTGACTCCTGCATTTTTTATAGCATTTCGCATCGAGTTCAGTATGCTCCCATATGTAGCTCCATGTCCGAGCTCTATCGCTTGGATGAAGCAGAAAGTCATGGCACCTGTCGATGTTATCTTTGACAGAGCCTGTGCCAGTTCAAATGTATCAGCAGAGGTCTGGTTATCATCACAGCCACTGAAAGAAATAACTTCTCCACCACTCGTTCCTTTCCATACTCCAGATCGCGGGCGATGGTCCTCCCATTTGTATTGTCCACTCCTATGA Protein sequence MVTSDVTIPPPMSPLTPAFFIAFRIEFSMLPYVAPCPSSIAWMKQKVMAPVDVIFDRACASSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGRWSSHLYCPLL
Homology
BLAST of Csor.00g254770 vs. NCBI nr
Match: KAG6597260.1 (hypothetical protein SDJN03_10440, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 213 bits (542), Expect = 1.16e-69 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 1 MVTSDVTIPPPMSPLTPAFFIAFRIEFSMLPYVAPCPSSIAWMKQKVMAPVDVIFDRACA 60
MVTSDVTIPPPMSPLTPAFFIAFRIEFSMLPYVAPCPSSIAWMKQKVMAPVDVIFDRACA
Sbjct: 1 MVTSDVTIPPPMSPLTPAFFIAFRIEFSMLPYVAPCPSSIAWMKQKVMAPVDVIFDRACA 60
Query: 61 SSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGRWSSHLYCPLL 103
SSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGRWSSHLYCPLL
Sbjct: 61 SSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGRWSSHLYCPLL 103
BLAST of Csor.00g254770 vs. ExPASy TrEMBL
Match: A0A0A9HM40 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.09e-16 Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0
Query: 43 MKQKVMAPVDVIFDRACASSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGR 93
MKQ V+APV+VIFD+A VSAEVWLSSQPL EI SPPLVPF TPDRGR
Sbjct: 1 MKQNVIAPVEVIFDKA----EVSAEVWLSSQPLNEIASPPLVPFQTPDRGR 47
BLAST of Csor.00g254770 vs. ExPASy TrEMBL
Match: A0A0A9G9I6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 1.74e-05 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 0
Query: 43 MKQKVMAPVDVIFDRACASSNVSAEVWLSSQPLKEITSPPLVPFHTPDRGRWSSHLYCPL 102
MK VMAPV+ + VS+E WLS QPL EI PPLV +PD W SH P+
Sbjct: 1 MKLYVMAPVEAEPENFA----VSSEFWLSPQPLIEIARPPLVHLDSPDGRLWFSHCQYPV 57
BLAST of Csor.00g254770 vs. ExPASy TrEMBL
Match: A0A2P2JYL5 (Metacaspase-1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.18e-04 Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 0
Query: 5 DVTIPPPMSPLTPAFFIAFRIEFSMLPYVAPCPSSIAWMKQ 45
DVTIPPP S L + I FSM PYV PCP S+AWMK+
Sbjct: 44 DVTIPPPSSLLV--LLMVDLIAFSMFPYVFPCPRSMAWMKE 82
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG6597260.1 | 1.16e-69 | 100.00 | hypothetical protein SDJN03_10440, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A9HM40 | 1.09e-16 | 76.47 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
| A0A0A9G9I6 | 1.74e-05 | 47.54 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
| A0A2P2JYL5 | 2.18e-04 | 58.54 | Metacaspase-1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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