Csor.00g253040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein RDM1-like
Location	Csor_Chr06: 9913585 .. 9915098 (-)
RNA-Seq Expression	Csor.00g253040
Synteny	Csor.00g253040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGGCCGAACATATAAGCATGCTACTCCCAACATAATCATTGTAACATTTTTTTTTTCGAAATTAAGCAATTTTGTAATTTCCATAATTAATAATTAATTAATTAATTAAATAACTCGTTATGGGCTTTGATTTTGGGCCTGAAATTGACGGGCTTCTGAGATGGGCTCACATTTTATGTACATATTCTCCTCTTGAATGCCCACAAGGGGTTTGTTCTTTTGCCCACTTCAAAATACCATAAGGTGTTTGATACTGCGCAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCGAGCTCGTTGGATTCGTTACTGAGCTCTGGTGATTATCCGTGGCGAAACCCAGATCGCAGAAGAGTTTCGGGTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGGTACCTCATGATCACTCTGACTTCCCATTTATCCGTTACCCTCTCTGTTCTTCCATTTTGTTTGTTTGAGATGTCAGTTGTTATTGGATATCATCCTGTGTGTGGATTTTCCAGAATGTTGCTTCGTTTTTTGATGCGTTGTCGTAATAGAGTTTCGTTAGTTCTTAGAGATTGCCCTAGATATTGATGGCTATTGAGGGTAGTAATAATCTGAGGTTGTTCCTTAGCAGAAACTGAGTGCATTGCTTCATAAATTGCATGTGCGAGATGTTCTTTGGGAATGGAGATGTGTGATAGTAAGATAGTGATGGCTCAATGCGGTGATTAGTTCCAATTCTGTGATTAAGTTTTGTTATGAACATGAGATTGAAAGTTTAAAGCTGTTATTTATTAGTAACCATGATATTTTTTCTCCAGAGTTCCATTCTTTACAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGCCTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGTAATTTGATCTTTGTCTTTGTTAGACCAACAATTTGAAGTATTTCGTGAGATAAATTTAGAGTTTTTATATATAAATTTTCACATTCATAAGCTTTGGAAAAGAGGATCTTCTGTGAAATGCCATCTAATGATATGCAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

ATGAAAATGGGCCGAACATATAAGCATGCTACTCCCAACATAATCATTATCGCAGAAGAGTTTCGGGTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGAGTTCCATTCTTTACAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGCCTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA

Coding sequence (CDS)

ATGAAAATGGGCCGAACATATAAGCATGCTACTCCCAACATAATCATTATCGCAGAAGAGTTTCGGGTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGAGTTCCATTCTTTACAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGCCTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA

Protein sequence

MKMGRTYKHATPNIIIIAEEFRVYDSKLSLFSQNTKSSILYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL

Homology

[Close]

BLAST of Csor.00g253040 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-45
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 58  SGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHR 117
           SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 118 GSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 177
           GS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 178 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 216
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Csor.00g253040 vs. NCBI nr
Match: KAG6597432.1 (Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 443 bits (1139), Expect = 5.23e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MKMGRTYKHATPNIIIIAEEFRVYDSKLSLFSQNTKSSILYKMKRPMPWNEQVDVISSGE 60
           MKMGRTYKHATPNIIIIAEEFRVYDSKLSLFSQNTKSSILYKMKRPMPWNEQVDVISSGE
Sbjct: 1   MKMGRTYKHATPNIIIIAEEFRVYDSKLSLFSQNTKSSILYKMKRPMPWNEQVDVISSGE 60

Query: 61  SSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSV 120
           SSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSV
Sbjct: 61  SSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSV 120

Query: 121 IPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVW 180
           IPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVW
Sbjct: 121 IPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVW 180

Query: 181 LVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           LVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 181 LVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216

[Close]

BLAST of Csor.00g253040 vs. NCBI nr
Match: KAG7028891.1 (Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368 bits (945), Expect = 6.77e-128
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 36  KSSILYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEG 95
           +SS LYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSEG
Sbjct: 6   QSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEG 65

Query: 96  MLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQL 155
           MLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQL
Sbjct: 66  MLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQL 125

Query: 156 RFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 215
           RFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
Sbjct: 126 RFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 185

[Close]

BLAST of Csor.00g253040 vs. NCBI nr
Match: XP_022951070.1 (protein RDM1-like [Cucurbita moschata])

HSP 1 Score: 358 bits (920), Expect = 2.87e-124
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSEGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. NCBI nr
Match: XP_023538686.1 (protein RDM1-like [Cucurbita pepo subsp. pepo] >XP_023538687.1 protein RDM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355 bits (911), Expect = 6.75e-123
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTS+GMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPAHRGSVIPF TWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. NCBI nr
Match: XP_022974457.1 (protein RDM1-like [Cucurbita maxima] >XP_022974458.1 protein RDM1-like [Cucurbita maxima] >XP_022974459.1 protein RDM1-like [Cucurbita maxima] >XP_022975130.1 protein RDM1-like [Cucurbita maxima] >XP_022975131.1 protein RDM1-like [Cucurbita maxima] >XP_022975132.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 348 bits (894), Expect = 2.63e-120
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSE MLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLHYLTNIQLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL
Match: A0A6J1GHM4 (protein RDM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454021 PE=4 SV=1)

HSP 1 Score: 358 bits (920), Expect = 1.39e-124
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSEGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL
Match: A0A6J1IGA1 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111473115 PE=4 SV=1)

HSP 1 Score: 348 bits (894), Expect = 1.28e-120
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSE MLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLHYLTNIQLKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 333 bits (855), Expect = 1.12e-114
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+D FKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLHYLTNI LKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 333 bits (854), Expect = 1.59e-114
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+D FKIPAKEMT+EGMLIKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLHYLTNI LKQWDQLRFGSVDE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL
Match: A0A6J1E3H6 (protein RDM1-like OS=Momordica charantia OX=3673 GN=LOC111025708 PE=4 SV=1)

HSP 1 Score: 331 bits (849), Expect = 9.20e-114
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102
           MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+D  KIPAKE+TSEG+L KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAE 60

Query: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162
           MYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL YLTNIQLKQWDQLRFGS DE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLXYLTNIQLKQWDQLRFGSSDE 120

Query: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216
           YKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Sbjct: 121 YKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL 174

[Close]

BLAST of Csor.00g253040 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-46
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 58  SGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHR 117
           SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 118 GSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 177
           GS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 178 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 216
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:

BLAST of Csor.00g253040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ3	3.7e-45	54.43	Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1	[more]

BLAST of Csor.00g253040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597432.1	5.23e-157	100.00	Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028891.1	6.77e-128	98.34	Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951070.1	2.87e-124	99.43	protein RDM1-like [Cucurbita moschata]	[more]
XP_023538686.1	6.75e-123	98.28	protein RDM1-like [Cucurbita pepo subsp. pepo] >XP_023538687.1 protein RDM1-like...	[more]
XP_022974457.1	2.63e-120	97.13	protein RDM1-like [Cucurbita maxima] >XP_022974458.1 protein RDM1-like [Cucurbit...	[more]

BLAST of Csor.00g253040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHM4	1.39e-124	99.43	protein RDM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454021 PE=4 SV=1	[more]
A0A6J1IGA1	1.28e-120	97.13	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111473115 PE=4 SV=1	[more]
A0A6J1INZ9	1.12e-114	92.53	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1	[more]
A0A6J1GV10	1.59e-114	92.53	protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1	[more]
A0A6J1E3H6	9.20e-114	89.66	protein RDM1-like OS=Momordica charantia OX=3673 GN=LOC111025708 PE=4 SV=1	[more]

BLAST of Csor.00g253040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22680.1	2.6e-46	54.43	RNA-DIRECTED DNA METHYLATION 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015270	Protein RDM1, plant	PFAM	PF09187	RdDM_RDM1	coord: 97..215 e-value: 5.3E-65 score: 216.8
IPR015270	Protein RDM1, plant	PANTHER	PTHR36366	PROTEIN RDM1	coord: 43..216
IPR036319	RDM1 superfamily	GENE3D	1.20.120.690	RDM1 protein domain	coord: 95..216 e-value: 1.8E-61 score: 207.4
IPR036319	RDM1 superfamily	SUPERFAMILY	109920	Hypothetical protein At3g22680	coord: 95..215
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 43..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253040.m01	Csor.00g253040.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	RNA polymerase V complex
cellular_component	GO:0005634	nucleus