Csor.00g252840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g252840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem I reaction center subunit II, chloroplastic-like
Location	Csor_Chr06: 9996214 .. 9996837 (-)
RNA-Seq Expression	Csor.00g252840
Synteny	Csor.00g252840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGATTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGATTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGATTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.5e-99
Identity = 188/208 (90.38%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKP-LNLASSSRFVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKST  ++ WKQS TLSFL +KP L  ASSSR  KVSAEAE  +
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-84
Identity = 168/211 (79.62%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRFVKVSAEAEAAA 60
           MAMA QA+LFTP L+ PKS  T   WKQS  +SF   K L +  S +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPPLSVPKS--TTAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  AE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            E   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-82
Identity = 162/208 (77.88%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSA-EAEAAA 60
           MAMA QA+LFTP+L+ PKS+A    WKQS   SF   +  +  S+ R ++  A EA    
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS-LASFSPKQLKSTVSAPRPIRAMAEEAATKE 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
           AEAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  AEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+
Sbjct: 121 REGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 165/214 (77.10%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTT---PKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEA 60
           MAMA QATLF+PS  +   P  T    S+KQ   ++F  +KP +   S R    +AE +A
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFA-SKPASRHHSIR-AAAAAEGKA 60

Query: 61  AAA----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
           AAA    EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 61  AAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 VNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot
Match: Q9SA56 (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.9e-76
Identity = 151/210 (71.90%), Postives = 168/210 (80.00%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKV----SAEAEA 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  AAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

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BLAST of Csor.00g252840 vs. NCBI nr
Match: KAG6597451.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402 bits (1032), Expect = 5.43e-141
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. NCBI nr
Match: XP_022934493.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata] >KAG7028912.1 Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399 bits (1026), Expect = 4.46e-140
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSR VKVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. NCBI nr
Match: XP_023539342.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399 bits (1025), Expect = 6.33e-140
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSR +KVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLIKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. NCBI nr
Match: XP_022973649.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] >XP_022975157.1 photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 397 bits (1021), Expect = 2.58e-139
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAV WKQSPTLSFLNAKPLNLASSSR VKVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 375 bits (962), Expect = 2.64e-130
Identity = 194/208 (93.27%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRFVKVSAEAEAAA 60
           MAMAAQATLFTPSL+TPKSTA  + WKQS TLSF+N+KPL   A+SSR VKVSAEAEAAA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL
Match: A0A6J1F7T5 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441652 PE=3 SV=1)

HSP 1 Score: 399 bits (1026), Expect = 2.16e-140
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSR VKVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL
Match: A0A6J1ICA2 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474178 PE=3 SV=1)

HSP 1 Score: 397 bits (1021), Expect = 1.25e-139
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60
           MAMAAQATLFTPSLTTPKSTATAV WKQSPTLSFLNAKPLNLASSSR VKVSAEAEAAAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 375 bits (962), Expect = 1.28e-130
Identity = 194/208 (93.27%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRFVKVSAEAEAAA 60
           MAMAAQATLFTPSL+TPKSTA  + WKQS TLSF+N+KPL   A+SSR VKVSAEAEAAA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL
Match: A0A6J1INM6 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479135 PE=3 SV=1)

HSP 1 Score: 373 bits (957), Expect = 7.39e-130
Identity = 193/208 (92.79%), Postives = 198/208 (95.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRFVKVSAEAEAAA 60
           MAMAAQATLFTPSL+TPKSTA  + WKQS TL F+N+KPL   A+SSR VKVSAEAEAAA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 7.97e-127
Identity = 190/208 (91.35%), Postives = 198/208 (95.19%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKP-LNLASSSRFVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKS+A ++ WKQSPTLSFL +KP L  ASSSR +KVSAEAEAA 
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Csor.00g252840 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-77
Identity = 151/210 (71.90%), Postives = 168/210 (80.00%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKV----SAEAEA 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  AAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Csor.00g252840 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 281.2 bits (718), Expect = 6.8e-76
Identity = 154/213 (72.30%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLA---SSSRFVKVSAEAEAA 62
           MA QA  +F  ++TT      A S  +         +P +L+   ++ R  K  + A AA
Sbjct: 1   MATQAAGIFNSAITT-----AATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAA 60

Query: 63  AA----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 122
           AA    EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTG
Sbjct: 61  AAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTG 120

Query: 123 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 182
           GAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK 
Sbjct: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKA 180

Query: 183 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 NPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

The following BLAST results are available for this feature:

BLAST of Csor.00g252840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	2.5e-99	90.38	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P12372	1.0e-84	79.62	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P29302	2.1e-82	77.88	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12353	1.1e-81	77.10	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SA56	3.9e-76	71.90	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Csor.00g252840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597451.1	5.43e-141	100.00	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]
XP_022934493.1	4.46e-140	99.52	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata...	[more]
XP_023539342.1	6.33e-140	99.03	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022973649.1	2.58e-139	99.03	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] ...	[more]
XP_022955930.1	2.64e-130	93.27	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]

BLAST of Csor.00g252840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7T5	2.16e-140	99.52	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1ICA2	1.25e-139	99.03	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1GWF9	1.28e-130	93.27	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1INM6	7.39e-130	92.79	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A5D3D399	7.97e-127	91.35	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Csor.00g252840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03130.1	2.8e-77	71.90	photosystem I subunit D-2	[more]
AT4G02770.1	6.8e-76	72.30	photosystem I subunit D-1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 75..205 e-value: 4.9E-68 score: 226.9
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..207
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 65..207 e-value: 3.6E-77 score: 258.6
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 72..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g252840.m01	Csor.00g252840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I