Csor.00g252150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g252150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S21
Location	Csor_Chr06: 10378832 .. 10380573 (-)
RNA-Seq Expression	Csor.00g252150
Synteny	Csor.00g252150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACGAAGAGGGAAAAATCACGGAGCTTTATATTCCCAGAAAATGGTTCGTAATATTATAGCCTAGCTTTTGATGCTTTTGTTGCTAATTTTCATGTGATTTGAGCTTTGATTATGACTTATTGTGTCTTCGATTCAGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGTGATTGTTATTTATCTATCTATCTCTGTTTTTGGATTTGTAGCGATTGGATGTGGTTTAATCTGTTATTGTATAAGAGTATTGACTTGGAATAGGACTTGTCTTGGTGATGCAAACAAAAATCTAATTATATTCATGCCGATTTGGCTTGTGTTCTGCATTGTTCTGCATTTTTGTGTCGAAGTATTGTTTAAGATGAGTTGAACTTGCTTATGATTTCATCTGTCATTTGATTTGAGTTTGCCAGGAAAAGGAGATGCTATTGAGCATAACTTGTTCGAGATTGTTATCGCCTATTCAGTTAGTTAATTGAAACCAATCGTCGATTAAAAAATGAATGCTAAAGATTTATAGTTTGACTACATAATAGACCTAGAGAAGAAATCTTGAGCTTAGCTAACCTAAAATCCATAGACAATCAAACGCATTGGAGGAAGGAAAAGAAAAGGAGAAGAAACCAAAGAATTCTGATAATCTTCCTTTCTAAAGGCCTTCTCTGCTGTCTGCATTTGTACTATAACTTTTTCTTGAATGGCAAGAGAAGCCATTGAAGAGTAAACAGTCTGAAAGTATACAAATATTTCCTTTTACATCTTGTCATAGTTGTGTCCTCACCCATTGGAATCTGGGCTGATGAGAATTTAAGGATTTTTTTTATTTATTTTAATCTTCAACTTTCATTGGGCATGGATGGAGGCTTGGATTTGGATTCGTAGACCAATCAAATATTCAATTCTTATTAATGGCTAACCTAGGGGTAAAGTTAAAGTTTTGAGATATCTTTGGCAAGGTGAACCGTTGTCTCCTCTCCTTTTCATGCTTGTTGTGGATGTTTTTAGTAGGACGGTCGTTAAAGGACTATTGAGAAGTCGATGCATGATTTCTTTTGGGAAGGGGTTTACGAGGGGGAAGGAGCACACTTTGTGAGATGGGTGATGGTGGAAAAACCGTTGACTCTTGGTGGGTTAGATCTTGAGAATCTCAGGGTTTGTAACGGAACCTTGTTTGCAAAATTGCTCTAGCGGTTCCTCTCGGAGTCAGATTCCTAATAGTATAGGATTATTGTAAGTATGATCCTCATCTCTGAGTGATGGTCGGGTTGGGTCAAAGGCTCACCTGTAGAAGAAATAGCCTTGGAGTTCCCTTCTTTTTCTAAGTTAGTTCAAGTATTGGAGTTCCCCTTTGCTTGTTGTTTCCTTGTTTATATCATTTATCTTCCACGAGAAATCATCATGTGGCTGTTGTCTTTTTATTTTATGGGAGCACTCTCCTTTTTTCATTTGGGTTTTGTCATGCCTTCTTCGTTGGAAGGAGGTGTAAGACATGAACCATTTGTTGTGGGAGCCTTAGAGGAATTCAGTTCTCTACGCTGATATTGATATACTTATGGTGCTTTACAGGGGGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAG

mRNA sequence

ATGCAGAACGAAGAGGGAAAAATCACGGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGGGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAG

Coding sequence (CDS)

ATGCAGAACGAAGAGGGAAAAATCACGGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGGGCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGGGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAG

Protein sequence

MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKVEVHQQ

Homology

[Close]

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-37
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQ 82
          QGDADS +DRLW KKKVE  Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 83
          QGDADS +DRLW KKKVE  QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-34
Identity = 65/82 (79.27%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 83
          QGDADSALDRLW K+K EV QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-33
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQ 82
          QGDADS+LDRLW KKK E+ Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-25
Identity = 50/72 (69.44%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIR 60
          MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRL 72
          + G++D+AL+RL
Sbjct: 61 SMGESDAALNRL 72

[Close]

BLAST of Csor.00g252150 vs. NCBI nr
Match: XP_022950628.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >KAG6597520.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (435), Expect = 5.38e-54
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLWHKKKVEVHQQ
Sbjct: 61 QGDADSALDRLWHKKKVEVHQQ 82

[Close]

BLAST of Csor.00g252150 vs. NCBI nr
Match: XP_022973757.1 (40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_022975174.1 40S ribosomal protein S21-2-like [Cucurbita maxima])

HSP 1 Score: 171 bits (432), Expect = 1.54e-53
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLWHKKKVEVHQQ
Sbjct: 61 QGDADSALDRLWHKKKVEVHQQ 82

[Close]

BLAST of Csor.00g252150 vs. NCBI nr
Match: XP_023538827.1 (40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167 bits (424), Expect = 2.57e-52
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLD+NGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDDNGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLWHKKK EVHQQ
Sbjct: 61 QGDADSALDRLWHKKKGEVHQQ 82

[Close]

BLAST of Csor.00g252150 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 1.49e-51
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLW KKKVEV QQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Csor.00g252150 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 164 bits (416), Expect = 4.27e-51
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLW KKKVEV QQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL
Match: A0A6J1GFE6 (40S ribosomal protein S21 OS=Cucurbita moschata OX=3662 GN=LOC111453667 PE=3 SV=1)

HSP 1 Score: 172 bits (435), Expect = 2.60e-54
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLWHKKKVEVHQQ
Sbjct: 61 QGDADSALDRLWHKKKVEVHQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL
Match: A0A6J1IJN4 (40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111474210 PE=3 SV=1)

HSP 1 Score: 171 bits (432), Expect = 7.47e-54
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLWHKKKVEVHQQ
Sbjct: 61 QGDADSALDRLWHKKKVEVHQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 7.21e-52
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLW KKKVEV QQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 7.21e-52
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLW KKKVEV QQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 7.21e-52
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 82
          QGDADSALDRLW KKKVEV QQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Csor.00g252150 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-38
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQ 82
          QGDADS +DRLW KKKVE  Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of Csor.00g252150 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-37
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 83
          QGDADS +DRLW KKKVE  QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of Csor.00g252150 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-37
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWHKKKVEVHQQ 83
          QGDADS +DRLW KKKVE  QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:

BLAST of Csor.00g252150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E902	9.1e-37	85.19	40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2	[more]
Q9M337	1.3e-35	80.49	40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1	[more]
P35687	3.2e-34	79.27	40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3...	[more]
Q41852	2.8e-33	77.78	40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1	[more]
Q9SMI2	2.8e-25	69.44	40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1	[more]

BLAST of Csor.00g252150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950628.1	5.38e-54	100.00	40S ribosomal protein S21-2-like [Cucurbita moschata] >KAG6597520.1 40S ribosoma...	[more]
XP_022973757.1	1.54e-53	98.78	40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_022975174.1 40S ribosoma...	[more]
XP_023538827.1	2.57e-52	96.34	40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_004134210.2	1.49e-51	97.56	40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib...	[more]
XP_022138287.1	4.27e-51	96.34	40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ...	[more]

BLAST of Csor.00g252150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFE6	2.60e-54	100.00	40S ribosomal protein S21 OS=Cucurbita moschata OX=3662 GN=LOC111453667 PE=3 SV=...	[more]
A0A6J1IJN4	7.47e-54	98.78	40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111474210 PE=3 SV=1	[more]
A0A1S4DSM1	7.21e-52	97.56	40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1	[more]
A0A5D3CXC9	7.21e-52	97.56	40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L7W3	7.21e-52	97.56	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1	[more]

BLAST of Csor.00g252150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27700.1	6.5e-38	85.19	Ribosomal protein S21e	[more]
AT3G53890.1	9.4e-37	80.49	Ribosomal protein S21e	[more]
AT3G53890.2	9.4e-37	80.49	Ribosomal protein S21e	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001931	Ribosomal protein S21e	PIRSF	PIRSF002148	RPS21e	coord: 1..82 e-value: 2.3E-38 score: 128.2
IPR001931	Ribosomal protein S21e	PFAM	PF01249	Ribosomal_S21e	coord: 1..77 e-value: 1.8E-38 score: 130.5
IPR001931	Ribosomal protein S21e	PANTHER	PTHR10442	40S RIBOSOMAL PROTEIN S21	coord: 1..82
IPR038579	Ribosomal protein S21e superfamily	GENE3D	3.30.1230.20		coord: 1..81 e-value: 7.6E-42 score: 143.1
None	No IPR available	PANTHER	PTHR10442:SF13	40S RIBOSOMAL PROTEIN S21	coord: 1..82
IPR018279	Ribosomal protein S21e, conserved site	PROSITE	PS00996	RIBOSOMAL_S21E	coord: 11..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g252150.m01	Csor.00g252150.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome