Csor.00g251840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g251840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr06: 10506109 .. 10508669 (+)
RNA-Seq Expression	Csor.00g251840
Synteny	Csor.00g251840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCATCTCTGGTAATGTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCGCCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGTAATTATAAACAATTTCTATCTTCTATTTTATTTTTTTAAGAAAAATATTATAACCTTAATATTGAGTAAATTTAGACTAATTTCATTGAAATTTACCTCTGAATATGATTAAATGTGACTTTAGAACTAAATTAGAAAATTACTCATTAATTAACCAATAAATTATACCAAACTAAAGTAATAATAAAGTCAAAATTGAGCATGCAAAATTTTAAATGTAGCCAGAAAGTCAAACAAATTAAAAGAAAAGAGTACTGGTCCTTCAATAAAATGGTCAAACCTAGTTAACAAATATTAAAATTGCAACTAGGTATATATTTTAATTTAATAAAAATGAAAATTTTAACGTACTAATTTCATCAAAAATATTTTTAAAAAAAAAAAAAAATCAAATATTTGTCCATTTAAGAGAAGTAAAAAGGACTATTAATATTGAATTTTTTAAAATTATAAAAACTAAATTTTAATTCTATGTTGCTATAGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACAGAGGAAGCTCAACCTTGTTAATACCAGAGGGCAGCTTCTTCCTTGCCCAAGTGTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACAGTAAGTATGAACAAGTTAAAAATGAATCAGAGGGTAAATTTAAAAAGTTGAAAATTCACCTTTTTTTTGCGGGATTTTCTATCTGAATTTGCTGTGATCATCTGCTTCAATCCCCCATCAAAGACACCAAAGCTTTAACCATTTTTACCCAGTTCCATGCATTGATGCAAGTTTCCTTTATATGAGCAGTCTTTGAAGCTGAGTGATGTGTCAAATGCGACAGTGAGCAATATTAGCCTTGTGAACAGCAAGGGCTTTCATGTAGCCCTTAATGGGTGCGACAATATTCATCTTTCTGGGTTCAACATTACAGCTCCTTGGAATAGTCAGAACACTGATGGCATTCATATCAGTCAGTCCACCAATATCAACATAACAGCCTCCGACATCAGTGTCGGCGACGACTGTGTTTCCATCGGACCTGGTAGCATCAACGTGTCGGTTTCTAACGTTAGATGTGGTCCTGGTCATGGAATCAGGTATCGTATCGTATCTACCATCATTTCTAGCATCACAATTCAACTTTGCATCTCACTATTAATTGTATATACATCATTTACACATACAATACTATTGAAACATTTAGTAAAAGTAGAAGAGCATTAAAATGGTAATAGTTTTGAATGTGTTTGATATGGAATAATGCAGTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATAGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATCTTTGTGACATAAAAGAGGTAAATACTTATAATAGAATCCCTGCACTTTCAACTTCTTATTGTCTCATTATAATTTAGTTCCTTCACTTTAAAAATTGTGGTCCTAGTTGTAACCTTTTTGACAAAACATTGACATGACATGTTTATAGGATAAATTTTGGTTGATTTGACTCGATGTGGCGAAGTAGAAATAACTCTGGCACAGATGCATGTTTACAGGATAGAAAGAACTCTTTCCCAAACAAAAATTATTTTCTACCTCAAACTATCATAGTTTTTAGCCAAAAATAATTTACAGTTGAGCTTCGATTTATTCCTTCCCGGAAAAACACTTTTATGTTGATCAATTTCGACAAATCCACACAATGGTAGATTTAAAAAGCTTATGTGCTAAATTTATTCTTCAACAGAAAAGTGTGCTAAATGGTGTTTTTTTTTTTCAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCGTGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

mRNA sequence

ATGAAGCTTTCATCTCTGGTAATGTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCGCCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACAGAGGAAGCTCAACCTTGTTAATACCAGAGGGCAGCTTCTTCCTTGCCCAAGTGTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACATCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCGTGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

Coding sequence (CDS)

ATGAAGCTTTCATCTCTGGTAATGTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCGCCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACAGAGGAAGCTCAACCTTGTTAATACCAGAGGGCAGCTTCTTCCTTGCCCAAGTGTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACATCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCGTGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

Protein sequence

MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGRFNCKGSLNNFSILNSTF

Homology

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BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.4e-20
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 54  RGLA-------VFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQV 113
           RGLA       V+D+T +GA+ DG T    AF+  W   C     +TLL+P+G+F    V
Sbjct: 40  RGLAANSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPV 99

Query: 114 LFSGPCFGDLSPKVIILGTLIAPTT-LTADVWIYFKSLRHLTITGNVGSGILDGQGAETW 173
           +F+GPC   ++  V ++GT+IA T+      W  F+ + +L +T   G+G   G+G   W
Sbjct: 100 IFAGPCKSKVT--VNVIGTIIATTSGYATPEWFLFERVDNLVLT---GTGTFHGKGEAVW 159

Query: 174 LYGFNCRHRLSCGIFTTSSGVK-LSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYI 233
                C  ++ C +  TS   + + N+ I  IS      F + L     V  ENV +  I
Sbjct: 160 -KADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFL-----VKTENVNIQNI 219

Query: 234 NLTA-IEPPETDDIGRFNCKGSLNNFSILNST 256
            LTA  E P TD I   N     +N SIL+ST
Sbjct: 220 KLTAPAESPNTDGIHLSNA----DNVSILDST 236

[Close]

BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot
Match: P35338 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.1e-17
Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 59  FDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSP 118
           FD+T  GA  +GKT+++ A   AW  AC   G  T+LIP+G F + Q+ F+GPC GD++ 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVT- 100

Query: 119 KVIILGTLIAPTTLTA----DVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHR 178
            + + G L+A T L+       WI    + +L IT   G G LDGQG   W    +C  +
Sbjct: 101 -IQVDGNLLATTDLSQYKEHGNWIEILRVDNLVIT---GKGNLDGQGPAVWSKN-SCTKK 160

Query: 179 LSCGIFTTSSGVKLSNINIKNISGT--YNSEFAVNLQCSSAVPCENVQLSYINLTAI-EP 238
             C I   S  + +  +N   +SG    NS+F       +   C+N+ +  + +TA  + 
Sbjct: 161 YDCKILPNS--LVMDFVNNGEVSGVTLLNSKFF----HMNMYQCKNMLIKDVTVTAPGDS 214

[Close]

BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 62/186 (33.33%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 59  FDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSP 118
           FD+T  GA  +GKT+++ A   AW  AC   G  T+LIP+G F + Q+ F+GPC GD++ 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVT- 100

Query: 119 KVIILGTLIAPTTLTA----DVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHR 178
            + + G L+A T L+       WI    + +L IT   G G LDGQG   W    +C  +
Sbjct: 101 -IQVDGNLLATTDLSQYKDHGNWIEILRVDNLVIT---GKGNLDGQGPAVWSKN-SCTKK 160

Query: 179 LSCGIFTTSSGVKLSNINIKNISGT--YNSEFAVNLQCSSAVPCENVQLSYINLTAI-EP 238
             C I   S  + +  +N   +SG    NS+F       +   C+++ +  + +TA  + 
Sbjct: 161 YDCKILPNS--LVMDFVNNGEVSGVTLLNSKFF----HMNMYRCKDMLIKDVTVTAPGDS 214

[Close]

BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-16
Identity = 62/186 (33.33%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 59  FDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSP 118
           FD+T  GA  +GKT+++ A   AW  AC   G  T+LIP+G F +  + F+GPC GD++ 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVT- 100

Query: 119 KVIILGTLIAPTTLTA----DVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHR 178
            + + G L+A T L+       WI    + +L IT   G G LDGQG   W    +C  +
Sbjct: 101 -IQVNGNLLATTDLSQYKDHGNWIEILRVDNLVIT---GKGKLDGQGPAVWSKN-SCVKK 160

Query: 179 LSCGIFTTSSGVKLSNINIKNISG--TYNSEFAVNLQCSSAVPCENVQLSYINLTAI-EP 238
             C I   S  + +  +N   +SG    NS+F       +   C+++ +  +N+TA  + 
Sbjct: 161 YDCKILPNS--LVMDFVNNGEVSGITLLNSKFF----HMNMYKCKDMLIKDVNVTAPGDS 214

[Close]

BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-15
Identity = 65/195 (33.33%), Postives = 97/195 (49.74%), Query Frame = 0


Query: 57  AVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDL 116
           A  DV   GA  D KT++S AF  AW++ACA    ST+ +P+G + +  + F GPC G +
Sbjct: 68  AAVDVKASGAKGDSKTDDSAAFAAAWKEACA--AGSTITVPKGEYMVESLEFKGPCKGPV 127

Query: 117 SPKVIILGTLIAPTTLTADV----WIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCR 176
           +  + + G   AP T+        WI F+++   T+ GN    I DGQG+  W    +C 
Sbjct: 128 T--LELNGNFKAPATVKTTKPHAGWIDFENIADFTLNGN--KAIFDGQGSLAWKAN-DCA 187

Query: 177 HRLSCGIFTTS-SGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEP 236
               C     +     L+N  I +I+ T +  F +N+     + C+N+ LS I + A  P
Sbjct: 188 KTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNI-----LNCKNITLSDIGIDA--P 247

Query: 237 PE---TD--DIGRFN 242
           PE   TD   IGR N
Sbjct: 248 PESLNTDGIHIGRSN 248

[Close]

BLAST of Csor.00g251840 vs. NCBI nr
Match: KAG6597551.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 521 bits (1343), Expect = 9.00e-187
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60
           MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180

Query: 181 TTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGRF 240
           TTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGRF
Sbjct: 181 TTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGRF 240

Query: 241 NCKGSLNNFSILNSTF 256
           NCKGSLNNFSILNSTF
Sbjct: 241 NCKGSLNNFSILNSTF 256

[Close]

BLAST of Csor.00g251840 vs. NCBI nr
Match: KAG7028995.1 (Exopolygalacturonase-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450 bits (1158), Expect = 6.71e-156
Identity = 256/430 (59.53%), Postives = 256/430 (59.53%), Query Frame = 0


Query: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60
           MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180

Query: 181 TTS--------------------------------------------------------- 240
           TTS                                                         
Sbjct: 181 TTSLKLSDVSNATVSNISLVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQST 240

Query: 241 ------------------------------------------------------------ 256
                                                                       
Sbjct: 241 NINITASDISVGDDCVSIGPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVIGIRVENC 300

[Close]

BLAST of Csor.00g251840 vs. NCBI nr
Match: XP_023539060.1 (exopolygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446 bits (1147), Expect = 3.15e-154
Identity = 252/430 (58.60%), Postives = 256/430 (59.53%), Query Frame = 0


Query: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60
           MKLS+L++FYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180

Query: 181 TTS--------------------------------------------------------- 240
           TTS                                                         
Sbjct: 181 TTSLKLSDVSNATVSNISLVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQST 240

Query: 241 ------------------------------------------------------------ 256
                                                                       
Sbjct: 241 NINITTSDISVGDDCVSIGPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVMGIRVENC 300

[Close]

BLAST of Csor.00g251840 vs. NCBI nr
Match: KAG6582197.1 (hypothetical protein SDJN03_22199, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (827), Expect = 2.85e-108
Identity = 160/256 (62.50%), Postives = 194/256 (75.78%), Query Frame = 0


Query: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60
           MKLS  + F FLLA+SVS   FSP+  LESA G +D L L     EP    P  G  VF+
Sbjct: 1   MKLSPFL-FSFLLALSVSASTFSPDTPLESADGGFDSLAL-----EPSGEFPLSGRGVFN 60

Query: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120
           V DYGA+ADGKTENSLAFM AWE+ACA++G S  LIPEG+F +A V FSGPCF +LSPKV
Sbjct: 61  VNDYGAVADGKTENSLAFMAAWEEACAFKGDSIFLIPEGTFLVAGVTFSGPCFNNLSPKV 120

Query: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180
           +I  TLIAPT LT DVWI+F SLRHL +TG  GS +L+GQGA+TW +G  CR R++C IF
Sbjct: 121 LIFATLIAPTKLTTDVWIHFHSLRHLLLTGLDGSAVLNGQGAQTWSFGSACRRRMTCPIF 180

Query: 181 TTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGRF 240
           TTSS VKLS +N++NISGTYN++ AVN+ CSS +PC N+ LSYINLTA  PPE  ++GRF
Sbjct: 181 TTSSSVKLSEMNMRNISGTYNTKLAVNIDCSSTMPCNNIHLSYINLTATHPPEKYELGRF 240

Query: 241 NCKGSLNNFSILNSTF 256
           NC G+LN F++LNSTF
Sbjct: 241 NCMGALNTFTVLNSTF 250

[Close]

BLAST of Csor.00g251840 vs. NCBI nr
Match: XP_022941512.1 (exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 295 bits (756), Expect = 5.06e-96
Identity = 178/352 (50.57%), Postives = 178/352 (50.57%), Query Frame = 0


Query: 79  MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 138
           MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 139 YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS--------------- 198
           YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS               
Sbjct: 61  YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 199 ------------------------------------------------------------ 256
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

[Close]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL
Match: A0A6J1FMM1 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446788 PE=3 SV=1)

HSP 1 Score: 295 bits (756), Expect = 2.45e-96
Identity = 178/352 (50.57%), Postives = 178/352 (50.57%), Query Frame = 0


Query: 79  MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 138
           MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 139 YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS--------------- 198
           YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS               
Sbjct: 61  YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 199 ------------------------------------------------------------ 256
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

[Close]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL
Match: A0A6J1I855 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470865 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 6.48e-94
Identity = 174/352 (49.43%), Postives = 176/352 (50.00%), Query Frame = 0


Query: 79  MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 138
           MGAWEDACAYRGSST LIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTFLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 139 YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS--------------- 198
           YFKSLR LTITGN+GSGILDGQGAETWLYGFNCRHRLSCGIFTTS               
Sbjct: 61  YFKSLRQLTITGNIGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 199 ------------------------------------------------------------ 256
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFKITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

[Close]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL
Match: A0A0A0L932 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164560 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 6.23e-70
Identity = 159/439 (36.22%), Postives = 193/439 (43.96%), Query Frame = 0


Query: 1   MKL-SSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVF 60
           MKL SSL +F  LLA+++S            AA  +D  L P   AEPPVGDPW GL VF
Sbjct: 1   MKLISSLSLFSSLLAITLS------------AADGFDIALPPSYPAEPPVGDPWSGLRVF 60

Query: 61  DVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPK 120
           DV DYG +ADGKT NSLA M AWEDAC ++G S LLIPEG++F+ QV FSGPCF DLSPK
Sbjct: 61  DVNDYGGVADGKTNNSLALMAAWEDACYHQGGSMLLIPEGNYFVDQVTFSGPCFNDLSPK 120

Query: 121 VIILGTLIAPTTLTADVWIYFKSLRHLTIT-GNVGSGILDGQGAETWLYGFNCRHRLSCG 180
           V+ILGTLIAPT LTADVWI+F SLR L++T G++ +  LDG+GA+TW  G  CRH ++C 
Sbjct: 121 VLILGTLIAPTNLTADVWIHFDSLRRLSLTAGHLST--LDGRGAQTWSSGSRCRHAMTCA 180

Query: 181 IFTTS------------------------------------------------------- 240
           +F  S                                                       
Sbjct: 181 MFAISLKLSNVLNGTVSSINLVDSKAFHVSIHQCDNIHLSGFNITAPWYSQNTDGFHISQ 240

Query: 241 ------------------------------------------------------------ 256
                                                                       
Sbjct: 241 STNISITNSKIGVGDDCVSIGPGSVNVLVSNVTCGPGHGISIGSLGRYKMENDVRGIWVE 300

[Close]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL
Match: A0A5A7U2P8 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001260 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 7.79e-60
Identity = 125/272 (45.96%), Postives = 158/272 (58.09%), Query Frame = 0


Query: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60
           MKLSSL++ +  L  ++   NFS       AA  +D  L P    EPPVGDPW GL VFD
Sbjct: 1   MKLSSLLLLFSFLLAAI---NFS-------AADGFDVALPPSYPTEPPVGDPWSGLRVFD 60

Query: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120
           V+DYGA+ADGKT ++LA M AWEDAC   G S LLIPEG++ + Q+  SGPCF DLSPKV
Sbjct: 61  VSDYGAVADGKTNDTLALMAAWEDACYNEGESMLLIPEGNYLVDQITLSGPCFSDLSPKV 120

Query: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180
           +ILGTLIAPT LTADVWI+F SL  L++T    S I DGQGA+TW  G  CR  L+C +F
Sbjct: 121 LILGTLIAPTNLTADVWIHFHSLPRLSLTAGHLSTI-DGQGAQTWSSGSACRRALTCPMF 180

Query: 181 TTS---------------SGVKLSNI---NIKNISGTYNSEFAVNLQCSSAVPCENVQLS 240
            T                  +KLSN+    + NI+   +  F V     S   C+N+  S
Sbjct: 181 ATVIIIYLEYQSFFACAVQSLKLSNVLNGTVSNINLVDSKGFHV-----SIFQCDNIHFS 240

Query: 241 YINLTAIEPPETDDIGRFNCKGSLNNFSILNS 254
             N+TA  P  + +    +   S  N +I NS
Sbjct: 241 GFNITA--PWNSQNTDGIHISQS-TNINITNS 253

[Close]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL
Match: A0A6J1GXB0 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111457998 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 1.99e-53
Identity = 118/351 (33.62%), Postives = 144/351 (41.03%), Query Frame = 0


Query: 79  MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 138
           M AWE+ACA++G S  LIPEG+F +A V FSGPCF +LSPKV+I  TLIAPT LT DVWI
Sbjct: 1   MAAWEEACAFKGDSIFLIPEGTFLVAGVTFSGPCFNNLSPKVLIFATLIAPTKLTTDVWI 60

Query: 139 YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTS--------------- 198
           +F SLRHL +TG  GS +L+GQGA+TW +G  CR R++C IFTTS               
Sbjct: 61  HFHSLRHLLLTGLDGSAVLNGQGAQTWSFGSACRRRMTCPIFTTSLKLTDVSHAIVKDIS 120

Query: 199 ------------------------------------------------------------ 256
                                                                       
Sbjct: 121 LVDSKGFHVAMHGCDHIHLYGFNITAPWNSQNTDGIHISNSTNINVANSHIGVGDDCVSI 180

[Close]

BLAST of Csor.00g251840 vs. TAIR 10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-24
Identity = 64/150 (42.67%), Postives = 90/150 (60.00%), Query Frame = 0


Query: 55  GLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFG 114
           G  VFDV  YGA  DGKT+N++AF  AW+DAC ++G   + IP G+F+L  V F+GPC  
Sbjct: 31  GRKVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKS 90

Query: 115 DLSPKVIILGTLIA---PTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNC 174
            +S   II GTL+A   P  +  D WI F+ + +LT++   G GILDGQG+ +W    NC
Sbjct: 91  RIS--FIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVS---GGGILDGQGSYSWPLN-NC 150

Query: 175 RHRLSCGIFTTSSG---VKLSNI-NIKNIS 198
           R   +C     + G   V+ S +  IK+I+
Sbjct: 151 RQTHNCRALPMNMGFQFVRFSRLTRIKSIN 174

HSP 2 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 180 FTTSSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINL 227
           F + S +++ ++  +NI GT  ++ AV LQCS  VPC+NVQL  IN+
Sbjct: 327 FQSFSKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINI 373

[Close]

BLAST of Csor.00g251840 vs. TAIR 10
Match: AT1G17150.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 7.0e-22
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 58  VFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLS 117
           VFDV  YGA  DGK +N+ AF  AW+DAC + G S + IP G+F+L  V F GPC G +S
Sbjct: 32  VFDVRSYGAKGDGKMDNTNAFTNAWKDACRWNGPSKMYIPLGTFYLGGVTFVGPCDGKIS 91

Query: 118 PKVIILGTLIAPTT---LTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHR 177
              +I GTL+AP     +  ++WI F+ + +LT+    G G LDGQG ++W    +C+  
Sbjct: 92  --FVIDGTLLAPPNNDDIKKEIWINFRYINYLTV---FGDGTLDGQGKKSWSL-IDCQKD 151

Query: 178 LSCGIFTTSSG---VKLSNIN 193
            +C     + G   VK S++N
Sbjct: 152 NNCPKLAINMGFDFVKNSSMN 166

HSP 2 Score: 45.8 bits (107), Expect = 6.0e-05
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 184 SGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLT 228
           S +++ N+ +KNI GT  ++ AV  QCS   PC++VQL  INLT
Sbjct: 329 SHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLT 372

[Close]

BLAST of Csor.00g251840 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-21
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 0


Query: 58  VFDVTDYGAIADGKTENSLAFMGAWEDACAYR-GSSTLLIPEGSFFLAQVLFSGPCFGDL 117
           +FDV +YGA AD + +N+ AF  AW +AC +  G ST+ IP G F+L QV FSGPC   +
Sbjct: 31  IFDVRNYGARADSQRDNAFAFTKAWNEACQWSYGRSTVYIPSGIFYLRQVTFSGPCKSSI 90

Query: 118 SPKVIILGTLIAPT---TLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRH 177
           +    I GTL+AP     +  + WI FK + +LT+T   G G+LDGQG+ +W    +C  
Sbjct: 91  T--FFIRGTLLAPRNPYAINQEEWILFKYVDNLTVT---GGGLLDGQGSYSWPLN-DCNK 150

Query: 178 RLSCGIFTTSSG---VKLSNIN----IKNISGTYNSEFAVNLQCSSAVPCENVQLSYINL 237
             +C     + G   VK S IN    I +  G +N  F+V          E+  ++ + +
Sbjct: 151 NTNCRTLAMNIGFAFVKSSKINGLRSINSKMGHFNL-FSV----------EDFNITGVTI 205

[Close]

BLAST of Csor.00g251840 vs. TAIR 10
Match: AT1G02790.1 (polygalacturonase 4 )

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-21
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 54  RGLA-------VFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQV 113
           RGLA       V+D+T +GA+ DG T    AF+  W   C     +TLL+P+G+F    V
Sbjct: 40  RGLAANSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPV 99

Query: 114 LFSGPCFGDLSPKVIILGTLIAPTT-LTADVWIYFKSLRHLTITGNVGSGILDGQGAETW 173
           +F+GPC   ++  V ++GT+IA T+      W  F+ + +L +T   G+G   G+G   W
Sbjct: 100 IFAGPCKSKVT--VNVIGTIIATTSGYATPEWFLFERVDNLVLT---GTGTFHGKGEAVW 159

Query: 174 LYGFNCRHRLSCGIFTTSSGVK-LSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYI 233
                C  ++ C +  TS   + + N+ I  IS      F + L     V  ENV +  I
Sbjct: 160 -KADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFL-----VKTENVNIQNI 219

Query: 234 NLTA-IEPPETDDIGRFNCKGSLNNFSILNST 256
            LTA  E P TD I   N     +N SIL+ST
Sbjct: 220 KLTAPAESPNTDGIHLSNA----DNVSILDST 236

[Close]

BLAST of Csor.00g251840 vs. TAIR 10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 0


Query: 58  VFDVTDYGAIADGKTENSLAFMGAWEDAC-AYRGSSTLLIPEGSFFLAQVLFSGPCFGDL 117
           VF+V  +G+  DGKT+N+ AF   W  AC    GSS + +P+G+F+L  V F GPC   +
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 118 SPKVIILGTLIAPTT---LTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRH 177
             + II GTL+AP     +  D WI F+ + +L+I+   GSG LDGQG ++W    +C  
Sbjct: 90  --EFIIDGTLLAPANPNDIKQDTWINFRYINNLSIS---GSGTLDGQGKQSWPLN-DCHK 149

Query: 178 RLSCGIFTTSSGVK-LSNINIKNIS------GTYNSEFAVNLQCSSAVPCENVQLSYINL 237
             +C     S G   ++N NIK+I+      G +N  F             +  ++ + +
Sbjct: 150 NPNCPKLAISMGFAFVNNSNIKDITSLNSKMGHFNFFFV-----------HHFNITGVTI 209

Query: 238 TA-IEPPETDDIGRFNCKGSLNNFSILNS 255
           TA  + P TD I      GS +N  I N+
Sbjct: 210 TAPSDSPNTDGIK----MGSCSNIQISNT 217

The following BLAST results are available for this feature:

BLAST of Csor.00g251840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49062	6.4e-20	33.96	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P35338	5.1e-17	33.87	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1	[more]
P26216	2.5e-16	33.33	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]
P35339	3.3e-16	33.33	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
P49063	3.6e-15	33.33	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ...	[more]

BLAST of Csor.00g251840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597551.1	9.00e-187	100.00	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028995.1	6.71e-156	59.53	Exopolygalacturonase-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023539060.1	3.15e-154	58.60	exopolygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
KAG6582197.1	2.85e-108	62.50	hypothetical protein SDJN03_22199, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022941512.1	5.06e-96	50.57	exopolygalacturonase-like [Cucurbita moschata]	[more]

BLAST of Csor.00g251840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMM1	2.45e-96	50.57	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446788 PE=3 SV=...	[more]
A0A6J1I855	6.48e-94	49.43	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470865 PE=3 SV=1	[more]
A0A0A0L932	6.23e-70	36.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164560 PE=3 SV=1	[more]
A0A5A7U2P8	7.79e-60	45.96	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1GXB0	1.99e-53	33.62	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111457998 PE=3 SV=...	[more]

BLAST of Csor.00g251840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78400.1	4.4e-24	42.67	Pectin lyase-like superfamily protein	[more]
AT1G17150.1	7.0e-22	41.13	Pectin lyase-like superfamily protein	[more]
AT2G33160.1	2.0e-21	36.98	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family pro...	[more]
AT1G02790.1	4.5e-21	33.96	polygalacturonase 4	[more]
AT2G26620.1	1.9e-19	33.97	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 55..173 e-value: 1.2E-17 score: 65.8
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 174..248 e-value: 2.1E-10 score: 42.1
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 182..228 e-value: 7.1E-8 score: 31.9
None	No IPR available	PANTHER	PTHR31375:SF33	EXOPOLYGALACTURONASE-LIKE	coord: 44..173
None	No IPR available	PANTHER	PTHR31375:SF33	EXOPOLYGALACTURONASE-LIKE	coord: 177..232
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 177..232
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 44..173
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 182..230
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 55..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g251840.m01	Csor.00g251840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity