|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTGTATGATATTATATTATGCACATGTGTTGTGGGTATGACTAATCTACCAAAAACTGATTTCCAATGCAGATAATTAAGCCCTCCATTTGATGCGAATCTTAGTCTTATAAGCAAGGTGGAAGGGGTAGGCGGATCTGGTCCACGCCAACGCCGCGGCAGGGTTCAGCGGCGGCTTTAAAAGAGACGGAAATGGGTTGCCCTTGTTGAAGCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA mRNA sequence ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA Coding sequence (CDS) ATGGGGTTTCAGAAGAACAAATTGGATTCTCAATTCGGTGTGTTATATTCGAAACGGCGAACTCCCTTTCTTTTCACCCTCCCGAATGGTCTCCAGCTTTGGCTTCCATTGGCGCCTGTATACGAGGCGGGTGTAGTCCTTAGCCAATTGCGGCGTGGTGCAGATTCTGCCGAGTGGCTCTTGGAGTTTGGGGTTGCCCTGTTGGAGCAATCCGGAAATGAAGTCGTCGGAGAGATGGATTCGAAGGCAGCCGGAGGGGGTCCGTTGGATGTCGAAGGGGGTGTGGATTTTGTTGTTGGTGGAAGAGGAGAAAAAGGAAGCGACGGTGAGGAAGGAGAGAACGGAGTGGAAAAAATGGTTGGGGAGGAGGAAGTAGTTATGGCCGAGCTGGAGGTGGTGGTGGGGGGAAAGGGGAGGGATCTTGTGGCCGATGTAGAAGGAGTCGGCTCGGCAGATGAGATGAAAAGGGAAGTCGAGCAAGACATCAGAGACGCGGATGGGGCGGAGGTAGATTCGAACATGGCCGTCGGGGAGAATGAGGTTGATGTTGTTGTGATGGGGGAGATGGAAACGAGGGCAGGAAGGCATGTTGGAATGAATGAATGA Protein sequence MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWLLEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMVGEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENEVDVVVMGEMETRAGRHVGMNE
Homology
BLAST of Csor.00g250070 vs. NCBI nr
Match: KAG6597726.1 (hypothetical protein SDJN03_10906, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 383 bits (984), Expect = 7.14e-134 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query: 1 MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL 60
MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL
Sbjct: 1 MGFQKNKLDSQFGVLYSKRRTPFLFTLPNGLQLWLPLAPVYEAGVVLSQLRRGADSAEWL 60
Query: 61 LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV 120
LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV
Sbjct: 61 LEFGVALLEQSGNEVVGEMDSKAAGGGPLDVEGGVDFVVGGRGEKGSDGEEGENGVEKMV 120
Query: 121 GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE 180
GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE
Sbjct: 121 GEEEVVMAELEVVVGGKGRDLVADVEGVGSADEMKREVEQDIRDADGAEVDSNMAVGENE 180
Query: 181 VDVVVMGEMETRAGRHVGMNE 201
VDVVVMGEMETRAGRHVGMNE
Sbjct: 181 VDVVVMGEMETRAGRHVGMNE 201
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6597726.1 | 7.14e-134 | 100.00 | hypothetical protein SDJN03_10906, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 151..171 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
