Csor.00g246070 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g246070
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	F-box protein At5g39250-like
Location	Csor_Chr14: 9228646 .. 9228993 (-)
RNA-Seq Expression	Csor.00g246070
Synteny	Csor.00g246070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGGTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCATGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCCCATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

mRNA sequence

ATGATTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGGTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCATGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCCCATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

Coding sequence (CDS)

ATGATTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGGTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCATGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCCCATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

Protein sequence

MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSHLYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN

Homology

[Close]

BLAST of Csor.00g246070 vs. ExPASy Swiss-Prot
Match: Q9FL82 (F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-29
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M++  EP F+I +  ++SVSVLV   +S+K  +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

[Close]

BLAST of Csor.00g246070 vs. NCBI nr
Match: KAG6581678.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240 bits (613), Expect = 4.14e-80
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH
Sbjct: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115

[Close]

BLAST of Csor.00g246070 vs. NCBI nr
Match: XP_022930578.1 (F-box protein At5g39250-like [Cucurbita moschata])

HSP 1 Score: 230 bits (587), Expect = 3.16e-74
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M LAVEPGFSISIFDTMSVSVLVRCKNSNK TQVVNKSVFDYFDKMS RAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 195 LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 249

[Close]

BLAST of Csor.00g246070 vs. NCBI nr
Match: KAG7018165.1 (F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214 bits (546), Expect = 1.02e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH
Sbjct: 16  MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 75

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE 104
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE
Sbjct: 76  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE 119

[Close]

BLAST of Csor.00g246070 vs. NCBI nr
Match: XP_022979540.1 (F-box protein At5g39250-like [Cucurbita maxima])

HSP 1 Score: 208 bits (529), Expect = 1.98e-65
Identity = 103/115 (89.57%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M LAVEPGFSISI DTMSVSVLVRCKNSNK   +VNKS+FDYFDKMSCRAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISISDTMSVSVLVRCKNSNKVAHIVNKSIFDYFDKMSCRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYP VSGIRAWVSLLFLDN ENDGVVDVNGIVMDFCDVAKTKDEVL L  LLNWN
Sbjct: 195 LYPFVSGIRAWVSLLFLDN-ENDGVVDVNGIVMDFCDVAKTKDEVLCLLYLLNWN 248

[Close]

BLAST of Csor.00g246070 vs. NCBI nr
Match: KAG6592901.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158 bits (399), Expect = 4.14e-46
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M L V+P FSI I  T+SVSVLV  K+SNK  ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 105 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 164

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W 
Sbjct: 165 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDWK 218

[Close]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL
Match: A0A6J1EVM4 (F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.53e-74
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M LAVEPGFSISIFDTMSVSVLVRCKNSNK TQVVNKSVFDYFDKMS RAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 195 LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 249

[Close]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL
Match: A0A6J1ITK0 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 9.56e-66
Identity = 103/115 (89.57%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M LAVEPGFSISI DTMSVSVLVRCKNSNK   +VNKS+FDYFDKMSCRAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISISDTMSVSVLVRCKNSNKVAHIVNKSIFDYFDKMSCRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYP VSGIRAWVSLLFLDN ENDGVVDVNGIVMDFCDVAKTKDEVL L  LLNWN
Sbjct: 195 LYPFVSGIRAWVSLLFLDN-ENDGVVDVNGIVMDFCDVAKTKDEVLCLLYLLNWN 248

[Close]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL
Match: A0A6J1KTX3 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 4.72e-46
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M L V+P FSI I  T+SVSVLV  K+SNK  ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 135 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W 
Sbjct: 195 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDWK 248

[Close]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL
Match: A0A6J1H6B9 (F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 4.72e-46
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M L V+P FSI I  T+SVSVLV  K+SNK  ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 135 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W 
Sbjct: 195 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDWK 248

[Close]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL
Match: A0A1S3BL55 (F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.57e-44
Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M L VEP FSI I + +S SVLV  K+SNK  ++VNKSVFDY D+ S RA  FDYLDFS 
Sbjct: 136 MTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDRTSYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115
           L+P VSGIRAW+SLLF+D+  NDG +DV GIVMDFCD A TKDEVLWL DLL+W 
Sbjct: 196 LHPFVSGIRAWISLLFMDDG-NDGAIDVFGIVMDFCDAANTKDEVLWLLDLLDWK 249

[Close]

BLAST of Csor.00g246070 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-30
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60
           M++  EP F+I +  ++SVSVLV   +S+K  +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

The following BLAST results are available for this feature:

BLAST of Csor.00g246070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL82	2.6e-29	53.45	F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1	[more]

BLAST of Csor.00g246070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581678.1	4.14e-80	100.00	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930578.1	3.16e-74	97.39	F-box protein At5g39250-like [Cucurbita moschata]	[more]
KAG7018165.1	1.02e-69	100.00	F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022979540.1	1.98e-65	89.57	F-box protein At5g39250-like [Cucurbita maxima]	[more]
KAG6592901.1	4.14e-46	68.70	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Csor.00g246070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVM4	1.53e-74	97.39	F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 ...	[more]
A0A6J1ITK0	9.56e-66	89.57	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV...	[more]
A0A6J1KTX3	4.72e-46	68.70	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV...	[more]
A0A6J1H6B9	4.72e-46	68.70	F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1	[more]
A0A1S3BL55	1.57e-44	66.96	F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1	[more]

BLAST of Csor.00g246070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39250.1	1.8e-30	53.45	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044207	F-box protein At5g39250-like	PANTHER	PTHR47722	EXPRESSED PROTEIN	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g246070.m01	Csor.00g246070.m01	mRNA