Csor.00g241300 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g241300
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 13576993 .. 13580369 (-)
RNA-Seq ExpressionCsor.00g241300
SyntenyCsor.00g241300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGCTGTAAAGGAGAAAGAAGAAGCGAACCATTTATGCCTTGCCCCTTTCTTTGAGGTTACGAGCTCGGTGAATAAGAATCAATCCCTTTTATACTCAATTGCAAATCTCTGGCCTAGAACAAGAGTATGGGAGAGGAGGGAAATCAGGTTCGTTCAGTAGTCAGGCAAGAATGAGACTGCCCAGGAAGTCAAGGCTTAACCCTATCGGTCTCGTAGCTACTTCCTTCACCCTCTGCCTGAACTGTAAACAAAGACTGAAGCTCAAACCTTTTACATTCAATGTACTCTACGGATAGAGGAACTTATGATGAAGAGCTTCATGCTGTGGTACGTGCATTACATCAATATCAATATGGACCATAAAATTCATCTTCAAACTCAACCTAAGACCCTCAATAAAAATTCGAAAGTTTGAATTTGGAAAGTAGAGGGTCTGATCCCCTACCCGTGCCAGCTCCAATGACTACCCCCGTCATCCATATTCCCCCATAAAACAAATCTACATTACTAGCTTCATTCACTTCCCTCTATTGGAAAAATTTGCATTTCCTTCGTTATTCACTTTCCTTTATACTAGCAGATTGGTGAGCTGCTTTTTTCATCCCGATGTCGTGGAGGTCTATTAGGTTTTTATGCTTGTTTAAGAATCTAAATCCCATCTCTCATTTCTAGAATGTTCAGGATTTGTTTCTCAAGTCTAAATTAATCTCTAGATGCATACATATGTAAATCTCTAATTGCTCACGATCGTGGGGTAGAAGCTTTACTAAAAACATACTGATTTGGGTCAACATTTAAACCACTCTAGTTGTAGCACAGTAAACTTAGTTTGGTTCTCTTGTTCCTGCTTTTCTACGGAGAAATCCTATCAATCTCTTAGAGCACTATATATATAATCTAATCATGCGTGCAAGTTTGTTAGGGAGATATCCCATCAATCAACTAAAGCACTAAAATATTTGGGCAAACAAACAAGCAAAAAACTCAACAGGGAGACGACAATGTTGCATCTCATTGTCATTTCAGTTCCCAACAACACGACCTAAATATTGTCATGTCATCCCATGTTTCGAGACAGCTGGACCATCTTGGCTTTCTCGGACACATTCATTGAGAACTGGCACATCTGTCGATCATCTCATCGTGGCATCCCAAACATCCATCCATCTGGGTTCTCTCAAGCATGGGACTCTTTCGTATCCATGCTTAACCATTTACGACATACGTCTGGATAGTGGGTGAATATGTAAGGACTGGGCTGACTCAATGACTCAAAAAGACGGGTAAATTTTTTGCGGAATAAAACAAAGGAATTTAAAACATTATTTTTACGTTATATCAAAATAAAGTTTATTTATAAGTATTTAAAACAAAACATACTAGTTAAAACACAAAATAAGGAACAAACACAAAACATTTTAAGACAAAAGGGTTGAGGACGACAGGTGAGGTTAGTCTATAGCACCTTCTCAAGAGTTCGCTCCCGACCTCGACTAGCTCCTTATTACCTGGAAAAAAATGGAGAATAAAGAATGAGTAAAGACTTAGTAAGTAGCCTACTTGTGGGCTCTTAATCGTGTCCTTGGTATGCTAGGGTACCACATTCTTTGTTTTTGTTTTTGTTGTAAGTACTTAGGCCCTCTAGTTCTTGTTCTTGACTTGGGGTTCTTATCTTGATCTATCCTAAGGACCTTGGTCCTTAGATTCTAAAACCTTGGTTTTATTTTAGGGGTCTTAATACTATGATTCTTGGTTCTTGGTTCTGTGTCTTGGTTCTTGTTCTTAGAACTAGGATTTTGATCCATGCTCTAGTTCTTGATCTTTCTCTTGTTCTTGGTACTTTCTAGGTTCTTGTTCTGTTCTTGATTTGTTCTCCAAGACACTCCCCCTAGGATTTACAGCACTAGCCATGCACCTGAAAATCTTGTGTCCAAGGTTTCATGCGTTCCAAGCGACACAGTCTTAACCTACATCCAAGGCTTCATGCGTTCCAAGCGAAGTAGTCTTAACCCGCATCAATGGCTTGCCTTATAATACAGTTTGAATACCTACGCTCAAGGTTTCATGTGTTCCAAGCAACGCAGTTTAAGTCATGAGCACGTTGTATTGTGGGAGATCTTAGGAGGTTCTTGATTCTTGGTTAAGGTAACTTACTTTTTTCTTGTTCCTCCATGGCCCTAGACTACTCCCCATGGTTGACCATAAAGGTCACGTGGTCAGTGCATACATGAACATGGCATCTTGCAAATCTTTTGGGTACCCGTAACTTGGTGCAGGACATCTCTTCTAGGTGGGAAAACTTGAGGCCAAACATGACATCCTCCAAAGAAAACATGGTGCAGGGCATCCCACCTAGAAGAGATCTTGGGCATCAGAAAGCACGCTTGGTGAGAGGAAGGCATTGCTAGAAGAAGGCGGGGGAGGCGGGGGGGGGGGCCCAGCTCAACGCCGCCAGGGAAAGAGGCGAAGGGGGGTCGGAGGGCCCAAGTAAGGGGGGCGGGGGGGGCGCGCAGCGGGAGCAGAGCGCAGAGGCCGCGGGGCGACCGGGAGAGAACGAAGAGGGGCAGGCAGGGGAGCCTCGGCCGACGCGAAGCGGCACTGGGACCCCTAGCGCGCGGGGCGGGCGACGGAAAAAGGGAACGAACAACGGCCGAAAAGACCGACACGGCACAGCAGAGAAGAAAGCAGAGGCCAAGGGCGAGGGGGGTAGCTGGAACCGGGACAAGCAGGCAGGGACAAGGGAGGGAGGGAGGGGGAGAGAGAGACCCCGACCGCCCCGGAGACCCAGAAAGGCCGGCAAGGAACGGAGAGATCAGACCCCAACGACCAAAGGAAAAGGTACCGCGGGAGACCCGGGCCGCGCGGGACAGGCGCACGCAAGAACGACGAGCCACGGCACAGGAGAGCCCCCGAGGGAAATCAAAAGCAGAAAAGCATAAGCATGCGGGGGGAGCCCGACCCCCGACAGCGGACCCAGGGCACGGCGGAGGGAGAGTGGGCGAACCCGGAAGCAAGCCATGGAGAACGCATAAATCACAGATGACAGAAGGCAGACGAGGGAGCGAAACAGGGATACCGAGGCGGACGCTGGGAGGTAAACAACAGAGGACGGCGACCGGGCAGCGCCATCGCGCGTGCGAGACGCAACGGGAGAAGCACGGGCCGGAACAGCGGGAGAGCAGAAGAAAGAAGGGGCTCAAGGGCGGCAAAGCAGAGAGCAACAGCAGGCAGCGAGACGTCAGCAGAACAGGGAATGGGGGCTCACATACACAACCCCACGCGGGGCAGGCTCAAGGTGCTAATACGACTGTCGCTATCCGTACGGTCAGACCGAGGGGAGTAGCGAAGCGAAGGGAGAGGGGCCACTGA

mRNA sequence

ATGGATGATGCTGTAAAGGAGAAAGAAGAAGCGAACCATTTATGCCTTGCCCCTTTCTTTGAGGTTACGAGCTCGGTGAATAAGAATCAATCCCTTTTATACTCAATTGCAAATCTCTGGCCTAGAACAAGAGTATGGGAGAGGAGGGAAATCAGAAGAAGGCGGGGGAGGCGGGGGGGGGGGCCCAGCTCAACGCCGCCAGGGAAAGAGGCGAAGGGGGGTCGGAGGGCCCAAGTAAGGGGGGCGGGGGGGGCGCGCAGCGGGAGCAGAGCGCAGAGGCCGCGGGGCGACCGGGAGAGAACGAAGAGGGGCAGGCAGGGGAGCCTCGGCCGACGCGAAGCGGCACTGGGACCCCTAGCGCGCGGGGCGGGCGACGGAAAAAGGGAACGAACAACGGCCGAAAAGACCGACACGGCACAGCAGAGAAGAAAGCAGAGGCCAAGGGCGAGGGGGGTAGCTGGAACCGGGACAAGCAGGCAGGGACAAGGGAGGGAGGGAGGGGGAGAGAGAGACCCCGACCGCCCCGGAGACCCAGAAAGGCCGGCAAGGAACGGAGAGATCAGACCCCAACGACCAAAGGAAAAGGTACCGCGGGAGACCCGGGCCGCGCGGGACAGGCGCACGCAAGAACGACGAGCCACGGCACAGGAGAGCCCCCGAGGGAAATCAAAAGCAGAAAAGCATAAGCATGCGGGGGGAGCCCGACCCCCGACAGCGGACCCAGGGCACGGCGGAGGGAGAGTGGGCGAACCCGGAAGCAAGCCATGGAGAACGCATAAATCACAGATGACAGAAGGCAGACGAGGGAGCGAAACAGGGATACCGAGGCGGACGCTGGGAGGTAAACAACAGAGGACGGCGACCGGGCAGCGCCATCGCGCGTGCGAGACGCAACGGGAGAAGCACGGGCCGGAACAGCGGGAGAGCAGAAGAAAGAAGGGGCTCAAGGGCGGCAAAGCAGAGAGCAACAGCAGGCAGCGAGACGTCAGCAGAACAGGGAATGGGGGCTCACATACACAACCCCACGCGGGGCAGGCTCAAGGTGCTAATACGACTGTCGCTATCCGTACGGTCAGACCGAGGGGAGTAGCGAAGCGAAGGGAGAGGGGCCACTGA

Coding sequence (CDS)

ATGGATGATGCTGTAAAGGAGAAAGAAGAAGCGAACCATTTATGCCTTGCCCCTTTCTTTGAGGTTACGAGCTCGGTGAATAAGAATCAATCCCTTTTATACTCAATTGCAAATCTCTGGCCTAGAACAAGAGTATGGGAGAGGAGGGAAATCAGAAGAAGGCGGGGGAGGCGGGGGGGGGGGCCCAGCTCAACGCCGCCAGGGAAAGAGGCGAAGGGGGGTCGGAGGGCCCAAGTAAGGGGGGCGGGGGGGGCGCGCAGCGGGAGCAGAGCGCAGAGGCCGCGGGGCGACCGGGAGAGAACGAAGAGGGGCAGGCAGGGGAGCCTCGGCCGACGCGAAGCGGCACTGGGACCCCTAGCGCGCGGGGCGGGCGACGGAAAAAGGGAACGAACAACGGCCGAAAAGACCGACACGGCACAGCAGAGAAGAAAGCAGAGGCCAAGGGCGAGGGGGGTAGCTGGAACCGGGACAAGCAGGCAGGGACAAGGGAGGGAGGGAGGGGGAGAGAGAGACCCCGACCGCCCCGGAGACCCAGAAAGGCCGGCAAGGAACGGAGAGATCAGACCCCAACGACCAAAGGAAAAGGTACCGCGGGAGACCCGGGCCGCGCGGGACAGGCGCACGCAAGAACGACGAGCCACGGCACAGGAGAGCCCCCGAGGGAAATCAAAAGCAGAAAAGCATAAGCATGCGGGGGGAGCCCGACCCCCGACAGCGGACCCAGGGCACGGCGGAGGGAGAGTGGGCGAACCCGGAAGCAAGCCATGGAGAACGCATAAATCACAGATGACAGAAGGCAGACGAGGGAGCGAAACAGGGATACCGAGGCGGACGCTGGGAGGTAAACAACAGAGGACGGCGACCGGGCAGCGCCATCGCGCGTGCGAGACGCAACGGGAGAAGCACGGGCCGGAACAGCGGGAGAGCAGAAGAAAGAAGGGGCTCAAGGGCGGCAAAGCAGAGAGCAACAGCAGGCAGCGAGACGTCAGCAGAACAGGGAATGGGGGCTCACATACACAACCCCACGCGGGGCAGGCTCAAGGTGCTAATACGACTGTCGCTATCCGTACGGTCAGACCGAGGGGAGTAGCGAAGCGAAGGGAGAGGGGCCACTGA

Protein sequence

MDDAVKEKEEANHLCLAPFFEVTSSVNKNQSLLYSIANLWPRTRVWERREIRRRRGRRGGGPSSTPPGKEAKGGRRAQVRGAGGARSGSRAQRPRGDRERTKRGRQGSLGRREAALGPLARGAGDGKRERTTAEKTDTAQQRRKQRPRARGVAGTGTSRQGQGREGGGERDPDRPGDPERPARNGEIRPQRPKEKVPRETRAARDRRTQERRATAQESPRGKSKAEKHKHAGGARPPTADPGHGGGRVGEPGSKPWRTHKSQMTEGRRGSETGIPRRTLGGKQQRTATGQRHRACETQREKHGPEQRESRRKKGLKGGKAESNSRQRDVSRTGNGGSHTQPHAGQAQGANTTVAIRTVRPRGVAKRRERGH
Homology
[Close]
BLAST of Csor.00g241300 vs. NCBI nr
Match: KAG6601774.1 (hypothetical protein SDJN03_07007, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 687 bits (1774), Expect = 1.35e-248
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0 

Query: 1   MDDAVKEKEEANHLCLAPFFEVTSSVNKNQSLLYSIANLWPRTRVWERREIRRRRGRRGG 60
           MDDAVKEKEEANHLCLAPFFEVTSSVNKNQSLLYSIANLWPRTRVWERREIRRRRGRRGG
Sbjct: 1   MDDAVKEKEEANHLCLAPFFEVTSSVNKNQSLLYSIANLWPRTRVWERREIRRRRGRRGG 60

Query: 61  GPSSTPPGKEAKGGRRAQVRGAGGARSGSRAQRPRGDRERTKRGRQGSLGRREAALGPLA 120
           GPSSTPPGKEAKGGRRAQVRGAGGARSGSRAQRPRGDRERTKRGRQGSLGRREAALGPLA
Sbjct: 61  GPSSTPPGKEAKGGRRAQVRGAGGARSGSRAQRPRGDRERTKRGRQGSLGRREAALGPLA 120

Query: 121 RGAGDGKRERTTAEKTDTAQQRRKQRPRARGVAGTGTSRQGQGREGGGERDPDRPGDPER 180
           RGAGDGKRERTTAEKTDTAQQRRKQRPRARGVAGTGTSRQGQGREGGGERDPDRPGDPER
Sbjct: 121 RGAGDGKRERTTAEKTDTAQQRRKQRPRARGVAGTGTSRQGQGREGGGERDPDRPGDPER 180

Query: 181 PARNGEIRPQRPKEKVPRETRAARDRRTQERRATAQESPRGKSKAEKHKHAGGARPPTAD 240
           PARNGEIRPQRPKEKVPRETRAARDRRTQERRATAQESPRGKSKAEKHKHAGGARPPTAD
Sbjct: 181 PARNGEIRPQRPKEKVPRETRAARDRRTQERRATAQESPRGKSKAEKHKHAGGARPPTAD 240

Query: 241 PGHGGGRVGEPGSKPWRTHKSQMTEGRRGSETGIPRRTLGGKQQRTATGQRHRACETQRE 300
           PGHGGGRVGEPGSKPWRTHKSQMTEGRRGSETGIPRRTLGGKQQRTATGQRHRACETQRE
Sbjct: 241 PGHGGGRVGEPGSKPWRTHKSQMTEGRRGSETGIPRRTLGGKQQRTATGQRHRACETQRE 300

Query: 301 KHGPEQRESRRKKGLKGGKAESNSRQRDVSRTGNGGSHTQPHAGQAQGANTTVAIRTVRP 360
           KHGPEQRESRRKKGLKGGKAESNSRQRDVSRTGNGGSHTQPHAGQAQGANTTVAIRTVRP
Sbjct: 301 KHGPEQRESRRKKGLKGGKAESNSRQRDVSRTGNGGSHTQPHAGQAQGANTTVAIRTVRP 360

Query: 361 RGVAKRRERGH 371
           RGVAKRRERGH
Sbjct: 361 RGVAKRRERGH 371

[Close]
BLAST of Csor.00g241300 vs. NCBI nr
Match: MBD9461398.1 (hypothetical protein [Pseudomonas sp. PDM05])

HSP 1 Score: 55.1 bits (131), Expect = 2.29e-04
Identity = 61/190 (32.11%), Postives = 98/190 (51.58%), Query Frame = 0 

Query: 47  ERREIRRRRGRRGGGPSSTPPGKEAKGGRRAQVRGAGG---ARSGSRAQRPRGDRE---- 106
           ER++ R+RRG RG G          KG RR + +G GG    R G   ++ +G+RE    
Sbjct: 111 ERKKGRKRRGERGRG--------RRKGRRREEGKGKGGRRGGREGEEREKEKGEREGEGR 170

Query: 107 RTKRGRQGSLGRREAALGPLARGAGDGKRERTTAEKTDTAQQRRKQRPRARGVAGTGTSR 166
           R +RGR+G   ++E       RG  +G++ +   EK +  ++R K+  +       G  +
Sbjct: 171 REERGREGEKRKKEGGERGGGRGEKEGRKRKKKGEKEEEEKEREKKEGKGERGGREGRRK 230

Query: 167 QGQGREGGGERDPDRPGDPERPARNGEIRPQRPKEKVPRETRAARDRRTQERRATAQESP 226
           +  GR GG ER+ +R G+ ER  + GE + +R K K  R+ R  R++R + RR   +E  
Sbjct: 231 EKGGR-GGREREEEREGEEEREKKRGERKGERGKRKGGRKERERREKRKERRRGKKKEGK 290

Query: 227 RGKSKAEKHK 229
            G+ K E+ K
Sbjct: 291 GGRGKREEEK 291

The following BLAST results are available for this feature:
BLAST of Csor.00g241300 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g241300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601774.11.35e-248100.00hypothetical protein SDJN03_07007, partial [Cucurbita argyrosperma subsp. sorori... [more]
MBD9461398.12.29e-0432.11hypothetical protein [Pseudomonas sp. PDM05][more]
BLAST of Csor.00g241300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g241300 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..354

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g241300.m01Csor.00g241300.m01mRNA