Csor.00g240860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g240860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L35-like
Location	Csor_Chr04: 1183484 .. 1184572 (+)
RNA-Seq Expression	Csor.00g240860
Synteny	Csor.00g240860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGTTCGTGTCAATCTTGGTTTATAGAACATTTTTTTCGTAATTTATTTGTTGCTGATAAACATTCATTGATTGCTCTTGATTTTTTGATTGAGCGCAGCGAGAATTAAGGTTCACGAGCTTAGACAGAAGTCGAAGGCGGATCTTCTGACCCAGCTTAAAGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTTGCTAAGGTCACTGGTGGTGCTCCCAACAAGCTCTCCAAAATGTACGTTGTTCTATCTTTCCATTGATTTCTCCAAAATGTACGTTTGGGTTTTTGTTGTTATAATGTTTATGTGGTTTTGTTTTGGTGGTTCTTGATTGCAGTAAGGTGGTGAGGCTGTCAATTGCTCAGGTGTTGACCGTGATTTCTCAGAAACAGAAAGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGTCCCAAGAAGACCAGGGCCATTCGCCGAAGGCTCACCAAGCACCAAGTATGAACTTTCTTTCATTTGAAATGACATTTTCATACAGATTTTCCTTCCGCTGCTCTTGTATTTATCTCTGTGTCAGCTGAAAATTTGATTATTGTTGCATAAATCTAGATAATCTGTGAATTTGCTATCCATATTGTGAATGGTTGTGGATTCTGTTGTGTGTAGGTTTGTAGTGTTAATGTAGTATATCAATTGAATAACAACATTGACTATTACTTAACTATAGTTTGCTTTAGGCGGTCTTAGATTGTTGAGCCGTGGCAATTTTAGAAGTTTAGGTTAGACTTCGATTATGAGAAAAGAACAATGTTGAACAAAATGGTGCTGGAAGATCAGAATGATGCTCCTAGAATTTGAAGCCGTCTACCCATTTCCATGCCTTAGTACTATTAACAAAACCCTCAGTTTTATGCCTTATTTAGAATGTAGAACAGAATCCTCAATTTGTTGTATTGAAATACTCGACTACCTTTCTTCCTTATTCTAATTCGACATCATGTCGTGTTATACAGGCATCTCTATTGACCGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATACGCCATTAAGGTGTAG

mRNA sequence

ATGGCGAGAATTAAGGTTCACGAGCTTAGACAGAAGTCGAAGGCGGATCTTCTGACCCAGCTTAAAGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTTGCTAAGGTCACTGGTGGTGCTCCCAACAAGCTCTCCAAAATTAAGGTGGTGAGGCTGTCAATTGCTCAGGTGTTGACCGTGATTTCTCAGAAACAGAAAGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGTCCCAAGAAGACCAGGGCCATTCGCCGAAGGCTCACCAAGCACCAAGCATCTCTATTGACCGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATACGCCATTAAGGTGTAG

Coding sequence (CDS)

ATGGCGAGAATTAAGGTTCACGAGCTTAGACAGAAGTCGAAGGCGGATCTTCTGACCCAGCTTAAAGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTTGCTAAGGTCACTGGTGGTGCTCCCAACAAGCTCTCCAAAATTAAGGTGGTGAGGCTGTCAATTGCTCAGGTGTTGACCGTGATTTCTCAGAAACAGAAAGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGTCCCAAGAAGACCAGGGCCATTCGCCGAAGGCTCACCAAGCACCAAGCATCTCTATTGACCGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATACGCCATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.5e-51
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.9e-50
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.4e-49
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. NCBI nr
Match: XP_022941613.1 (60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo] >KAG6600078.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030747.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (562), Expect = 4.51e-72
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. NCBI nr
Match: XP_022923169.1 (60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218 bits (556), Expect = 3.71e-71
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. NCBI nr
Match: XP_022992073.1 (60S ribosomal protein L35-like [Cucurbita maxima])

HSP 1 Score: 217 bits (553), Expect = 1.06e-70
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLIQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. NCBI nr
Match: XP_022134532.1 (60S ribosomal protein L35 [Momordica charantia])

HSP 1 Score: 217 bits (552), Expect = 1.51e-70
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. NCBI nr
Match: XP_022990488.1 (60S ribosomal protein L35-like [Cucurbita maxima])

HSP 1 Score: 216 bits (551), Expect = 2.15e-70
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL
Match: A0A6J1FSL2 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=3 SV=1)

HSP 1 Score: 221 bits (562), Expect = 2.18e-72
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL
Match: A0A6J1E5L3 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=3 SV=1)

HSP 1 Score: 218 bits (556), Expect = 1.79e-71
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL
Match: A0A6J1JY13 (60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111488528 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 5.15e-71
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLIQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 7.31e-71
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL
Match: A0A6J1JTF2 (60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 1.04e-70
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-51
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 197.2 bits (500), Expect = 7.7e-51
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Csor.00g240860 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 194.9 bits (494), Expect = 3.8e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Csor.00g240860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	7.5e-51	91.06	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	4.9e-50	90.24	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	1.1e-49	89.43	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	1.8e-49	89.43	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	5.4e-49	88.62	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Csor.00g240860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941613.1	4.51e-72	100.00	60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosoma...	[more]
XP_022923169.1	3.71e-71	98.37	60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal ...	[more]
XP_022992073.1	1.06e-70	98.37	60S ribosomal protein L35-like [Cucurbita maxima]	[more]
XP_022134532.1	1.51e-70	98.37	60S ribosomal protein L35 [Momordica charantia]	[more]
XP_022990488.1	2.15e-70	97.56	60S ribosomal protein L35-like [Cucurbita maxima]	[more]

BLAST of Csor.00g240860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSL2	2.18e-72	100.00	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=...	[more]
A0A6J1E5L3	1.79e-71	98.37	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=...	[more]
A0A6J1JY13	5.15e-71	98.37	60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111488528 PE=3 ...	[more]
A0A6J1BZV3	7.31e-71	98.37	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]
A0A6J1JTF2	1.04e-70	97.56	60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 ...	[more]

BLAST of Csor.00g240860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	3.4e-51	90.24	Ribosomal L29 family protein	[more]
AT3G09500.1	7.7e-51	89.43	Ribosomal L29 family protein	[more]
AT5G02610.1	1.3e-50	89.43	Ribosomal L29 family protein	[more]
AT3G55170.1	3.8e-50	88.62	Ribosomal L29 family protein	[more]
AT3G55170.2	3.8e-50	88.62	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 1.2E-21 score: 78.6
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 2.47145E-11 score: 52.8751
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 1.3E-35 score: 123.5
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 1.2E-18 score: 64.9
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 1.1E-17 score: 63.7
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.972131
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g240860.m01	Csor.00g240860.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome