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Csor.00g238540 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGATCTTAGAAGTCGAGCATCGTATCTGCAACGTGACAATCGCAAGTACGGCGATATGAAGGATCGGATCTTGCTTTCAGTTAAGTGTGTACGTAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACTTATCACCCTTCTTACTTCAAACAAGATATGTTCTACTTCAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG ATGGGCGATCTTAGAAGTCGAGCATCGTATCTGCAACGTGACAATCGCAAGTACGGCGATATGAAGGATCGGATCTTGCTTTCAGTTAAGTGTGTACGTAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACTTATCACCCTTCTTACTTCAAACAAGATATGTTCTACTTCAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG ATGGGCGATCTTAGAAGTCGAGCATCGTATCTGCAACGTGACAATCGCAAGTACGGCGATATGAAGGATCGGATCTTGCTTTCAGTTAAGTGTGTACGTAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCTTCTGCATGGTATCATGTAACTTATCACCCTTCTTACTTCAAACAAGATATGTTCTACTTCAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG MGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHVTYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL Homology
BLAST of Csor.00g238540 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 6.3e-24 Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 9.8e-17 Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06 Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 2.7e-06 Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 0
BLAST of Csor.00g238540 vs. NCBI nr
Match: KAG6590319.1 (RNA-dependent RNA polymerase 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210 bits (534), Expect = 1.55e-68 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. NCBI nr
Match: XP_023516327.1 (RNA-dependent RNA polymerase 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 210 bits (534), Expect = 1.39e-60 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. NCBI nr
Match: XP_022921679.1 (RNA-dependent RNA polymerase 2 [Cucurbita moschata]) HSP 1 Score: 210 bits (534), Expect = 1.39e-60 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. NCBI nr
Match: KAG6589458.1 (RNA-dependent RNA polymerase 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023142.1 RNA-dependent RNA polymerase 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 210 bits (534), Expect = 1.39e-60 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. NCBI nr
Match: XP_022988330.1 (RNA-dependent RNA polymerase 2 [Cucurbita maxima]) HSP 1 Score: 208 bits (529), Expect = 6.69e-60 Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy TrEMBL
Match: A0A6J1E171 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111429858 PE=3 SV=1) HSP 1 Score: 210 bits (534), Expect = 6.74e-61 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy TrEMBL
Match: A0A6J1JJ96 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111485606 PE=3 SV=1) HSP 1 Score: 208 bits (529), Expect = 3.24e-60 Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy TrEMBL
Match: A0A6J1C343 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111007004 PE=3 SV=1) HSP 1 Score: 182 bits (463), Expect = 2.86e-51 Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy TrEMBL
Match: A0A1S3BVE2 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493922 PE=3 SV=1) HSP 1 Score: 176 bits (446), Expect = 5.64e-49 Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of Csor.00g238540 vs. ExPASy TrEMBL
Match: A0A5D3BHS8 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001880 PE=3 SV=1) HSP 1 Score: 176 bits (446), Expect = 5.66e-49 Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0
BLAST of Csor.00g238540 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 ) HSP 1 Score: 111.3 bits (277), Expect = 4.5e-25 Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 0
BLAST of Csor.00g238540 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 ) HSP 1 Score: 53.9 bits (128), Expect = 8.5e-08 Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 0
BLAST of Csor.00g238540 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 ) HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07 Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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