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Csor.00g238430 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTAGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGTCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCGATGATGCCTTGTGGCTTTTGCCCTTAGAAATTTAA ATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTAGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGTCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCGATGATGCCTTGTGGCTTTTGCCCTTAGAAATTTAA ATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGCGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTAGCAGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATATGCGTGTGCTAAGGCTGAAGATCTAATGGAAATGGATAGAGTATTTAAGCGAATGAAAAATAAACACCGTCAGCCAGATACCAAAACATATTCTATTATGATAGAAGCATATGGGAAGCAAGGCATGAATGACAGGGTCCATTACTTGGAAATAGAAAAGAAGCAGGTCATCGATGATGCCTTGTGGCTTTTGCCCTTAGAAATTTAA MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVIYACAKAEDLMEMDRVFKRMKNKHRQPDTKTYSIMIEAYGKQGMNDRVHYLEIEKKQVIDDALWLLPLEI Homology
BLAST of Csor.00g238430 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.9e-44 Identity = 82/118 (69.49%), Postives = 106/118 (89.83%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12 Identity = 36/116 (31.03%), Postives = 69/116 (59.48%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy Swiss-Prot
Match: Q9FVX2 (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2) HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08 Identity = 27/85 (31.76%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08 Identity = 29/106 (27.36%), Postives = 57/106 (53.77%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy Swiss-Prot
Match: Q8RWS8 (Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana OX=3702 GN=EMB2654 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 9.0e-07 Identity = 34/120 (28.33%), Postives = 61/120 (50.83%), Query Frame = 0
BLAST of Csor.00g238430 vs. NCBI nr
Match: KAG6594037.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 263 bits (672), Expect = 1.09e-88 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Csor.00g238430 vs. NCBI nr
Match: KAG7021088.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 263 bits (672), Expect = 1.20e-83 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Csor.00g238430 vs. NCBI nr
Match: XP_023514865.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248 bits (634), Expect = 6.20e-78 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Csor.00g238430 vs. NCBI nr
Match: XP_022999798.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 245 bits (625), Expect = 1.25e-76 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Csor.00g238430 vs. NCBI nr
Match: XP_022930488.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 245 bits (625), Expect = 1.35e-76 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy TrEMBL
Match: A0A6J1KKQ9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494156 PE=4 SV=1) HSP 1 Score: 245 bits (625), Expect = 6.06e-77 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy TrEMBL
Match: A0A6J1EVC0 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436928 PE=4 SV=1) HSP 1 Score: 245 bits (625), Expect = 6.53e-77 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy TrEMBL
Match: A0A0A0K7C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1) HSP 1 Score: 227 bits (578), Expect = 6.20e-70 Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy TrEMBL
Match: A0A5D3BUY5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00710 PE=4 SV=1) HSP 1 Score: 225 bits (573), Expect = 1.30e-69 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0
BLAST of Csor.00g238430 vs. ExPASy TrEMBL
Match: A0A1S3C7L9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497754 PE=4 SV=1) HSP 1 Score: 225 bits (573), Expect = 3.55e-69 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0
BLAST of Csor.00g238430 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 179.9 bits (455), Expect = 1.3e-45 Identity = 82/118 (69.49%), Postives = 106/118 (89.83%), Query Frame = 0
BLAST of Csor.00g238430 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14 Identity = 37/119 (31.09%), Postives = 70/119 (58.82%), Query Frame = 0
BLAST of Csor.00g238430 vs. TAIR 10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 8.9e-10 Identity = 27/85 (31.76%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Csor.00g238430 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09 Identity = 29/106 (27.36%), Postives = 57/106 (53.77%), Query Frame = 0
BLAST of Csor.00g238430 vs. TAIR 10
Match: AT2G41720.2 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08 Identity = 34/120 (28.33%), Postives = 61/120 (50.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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