Csor.00g237880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g237880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL2-like
Location	Csor_Chr08: 7903655 .. 7904245 (+)
RNA-Seq Expression	Csor.00g237880
Synteny	Csor.00g237880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGCCGCCGCGTCTGATGACGACAACGGCTTCTTCTCTCCGCCGTCAGACAAGCCCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCCCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTACTGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTCGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAATCTGGTTGAGGTGGACGACGTGTCGGTACACGGGCCTCGAGGGCAACGGAGAATTTAG

mRNA sequence

ATGGCCACCGCCGCCGCGTCTGATGACGACAACGGCTTCTTCTCTCCGCCGTCAGACAAGCCCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCCCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTACTGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTCGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAATCTGGTTGAGGTGGACGACGTGTCGGTACACGGGCCTCGAGGGCAACGGAGAATTTAG

Coding sequence (CDS)

ATGGCCACCGCCGCCGCGTCTGATGACGACAACGGCTTCTTCTCTCCGCCGTCAGACAAGCCCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCCCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTACTGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCAAATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTCGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAATCTGGTTGAGGTGGACGACGTGTCGGTACACGGGCCTCGAGGGCAACGGAGAATTTAG

Protein sequence

MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLVEVDDVSVHGPRGQRRI

Homology

[Close]

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-36
Identity = 89/173 (51.45%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 9   DDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRP 68
           +DN F      K Y +S  I+L  +++L FVVILM+  HLY R YL    RR  R R R 
Sbjct: 14  EDNNF---SGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRN 73

Query: 69  R--PHFVFTAEPRTAA----PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 128
           R      FTA+P TAA      RGL   VIKSLP+F  S +   DPI CAVCLSEFEE+E
Sbjct: 74  RRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESE 133

Query: 129 TGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIVV 172
           TGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V+
Sbjct: 134 TGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVI 183

[Close]

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 67/153 (43.79%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRTAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL       S P  R      F  +P  ++ P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLR-----SSPFNRTTAASTFFTDP--SSTPGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPKCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS+++      +SS + V I + +P  G+
Sbjct: 121 CPLCRSQIEPFAGGVKSSMDEVAISISDPVYGD 146

[Close]

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-25
Identity = 74/166 (44.58%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRT 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF   R   R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLF--RRHNRRIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPKCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++PKC HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDR 177
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER 180

[Close]

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-24
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR-- 81
           Y+L+  I+L  VI+L   VIL++CFH Y R +LF   R+  R RRR   H    A  R  
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYAR-WLF--RRQNRRIRRRISAHLRSLAAARDP 81

Query: 82  --TAAPPRGLPQLVIKSLPLFVHSAKPDSDPI-YCAVCLSEFEENETGRVIPKCNHSFHV 141
             +++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+PKC H FHV
Sbjct: 82  TQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHV 141

Query: 142 GCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNLVEVDD 185
            CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+
Sbjct: 142 DCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDE 193

[Close]

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIF-VPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++PKCNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

[Close]

BLAST of Csor.00g237880 vs. NCBI nr
Match: KAG6593982.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396 bits (1018), Expect = 3.19e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSVHGPRGQRRI 196
           EVDDVSVHGPRGQRRI
Sbjct: 181 EVDDVSVHGPRGQRRI 196

[Close]

BLAST of Csor.00g237880 vs. NCBI nr
Match: KAG7026323.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1013), Expect = 1.84e-138
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDD+GFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSVHGPRGQRRI 196
           EVDDVSVHGPRGQRRI
Sbjct: 181 EVDDVSVHGPRGQRRI 196

[Close]

BLAST of Csor.00g237880 vs. NCBI nr
Match: XP_022930361.1 (RING-H2 finger protein ATL2-like [Cucurbita moschata])

HSP 1 Score: 392 bits (1006), Expect = 2.15e-137
Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDD+GFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLV+KSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVVKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSVHGPRGQRRI 196
           EVDDVS HGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Csor.00g237880 vs. NCBI nr
Match: XP_023514956.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380 bits (975), Expect = 1.15e-132
Identity = 189/196 (96.43%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDD+ FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGN V
Sbjct: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180

Query: 181 EVDDVSVHGPRGQRRI 196
           EVDDVS HGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Csor.00g237880 vs. NCBI nr
Match: XP_023000152.1 (RING-H2 finger protein ATL2-like [Cucurbita maxima])

HSP 1 Score: 377 bits (967), Expect = 2.28e-131
Identity = 189/201 (94.03%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MA AAASDDD+GFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MAAAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP+EIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPIEIVVEEPDRGNPV 180

Query: 181 EVDD-------VSVHGPRGQR 194
           EVDD       VS HGPRGQR
Sbjct: 181 EVDDESREVADVSEHGPRGQR 201

[Close]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL
Match: A0A6J1EQQ3 (RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111436830 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 1.04e-137
Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDD+GFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLV+KSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVVKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSVHGPRGQRRI 196
           EVDDVS HGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL
Match: A0A6J1KCT9 (RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111494436 PE=4 SV=1)

HSP 1 Score: 377 bits (967), Expect = 1.10e-131
Identity = 189/201 (94.03%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MA AAASDDD+GFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MAAAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180
           NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP+EIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPIEIVVEEPDRGNPV 180

Query: 181 EVDD-------VSVHGPRGQR 194
           EVDD       VS HGPRGQR
Sbjct: 181 EVDDESREVADVSEHGPRGQR 201

[Close]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL
Match: A0A6J1CAT0 (RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111009784 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 7.14e-76
Identity = 125/176 (71.02%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 6   ASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPS-RP 65
           A DDD+GFFSPPS K Y LS  I+L  +IVLLFVVILMIC HLYVRLYL S +RR + R 
Sbjct: 2   ADDDDDGFFSPPSYKRYALSGKIMLGAIIVLLFVVILMICLHLYVRLYLLSSNRRQAPRR 61

Query: 66  RRRPRPHFVFTAEPR----TAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 125
           RR  R HFVFTAEPR     AAP RGLPQ ++KSLP+FVHSAKPD DPI CAVCLSEFEE
Sbjct: 62  RRHRRAHFVFTAEPRHAAAAAAPSRGLPQSILKSLPVFVHSAKPDPDPICCAVCLSEFEE 121

Query: 126 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP-VEIVVEEPD 175
           NE GR+IPKC HSFHVGCIDMWFYSHVTCPLCRSEV+ E  S   P V + + +PD
Sbjct: 122 NEIGRIIPKCKHSFHVGCIDMWFYSHVTCPLCRSEVQPETGSDNPPDVSVSIHDPD 177

[Close]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL
Match: A0A6J1H376 (RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111459976 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 2.50e-74
Identity = 129/189 (68.25%), Postives = 142/189 (75.13%), Query Frame = 0


Query: 5   AASDDDNG--FFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPS 64
           AA DDD+G   FSP S K Y LS  I+L  VIVLLFVVILMIC HLYVRLYL S SRR S
Sbjct: 2   AAEDDDDGGGLFSPSSFKSYALSGKIMLGAVIVLLFVVILMICLHLYVRLYLLSSSRRQS 61

Query: 65  RP--RRRPRPHFVFTAEPR-TAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFE 124
           R   RRR R  F FT EPR  AA  RGLPQ ++KSLP+FVHS KPD DP+YCAVCLSEFE
Sbjct: 62  RSHRRRRRRVQFEFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFE 121

Query: 125 ENETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPES----STNPVEIVVEEPD 184
           ENE GR IPKCNHSFHVGCIDMWFYSHVTCPLCRSEVK EP S    S +PVE+V++  +
Sbjct: 122 ENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCE 181

[Close]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL
Match: A0A6J1L074 (RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111499181 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 3.96e-73
Identity = 133/204 (65.20%), Postives = 142/204 (69.61%), Query Frame = 0


Query: 8   DDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRP--R 67
           DD  G FSP S K Y LS  I+L  VIVLLFVVILMIC HLYVRLYL S SRR SR   R
Sbjct: 6   DDGGGLFSPSSFKSYALSGKIMLGTVIVLLFVVILMICLHLYVRLYLLSSSRRQSRSHRR 65

Query: 68  RRPRPHFVFTAEPR-TAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETG 127
           RR R  F FT EPR  AA  RGLP  ++K+LP+FVHS KPD DP+YCAVCLSEFEENE G
Sbjct: 66  RRRRVQFEFTTEPRIAAASSRGLPHSILKTLPVFVHSMKPDPDPVYCAVCLSEFEENEIG 125

Query: 128 RVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPES----STNPVEIVVE-------- 186
           R IPKCNHSFHVGCIDMWFYSHVTCPLCRSEVK EP S    S +PVEIV++        
Sbjct: 126 RTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSDDPVEIVLDVCEPGSRS 185

[Close]

BLAST of Csor.00g237880 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37
Identity = 89/173 (51.45%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 9   DDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRP 68
           +DN F      K Y +S  I+L  +++L FVVILM+  HLY R YL    RR  R R R 
Sbjct: 14  EDNNF---SGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRN 73

Query: 69  R--PHFVFTAEPRTAA----PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 128
           R      FTA+P TAA      RGL   VIKSLP+F  S +   DPI CAVCLSEFEE+E
Sbjct: 74  RRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESE 133

Query: 129 TGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIVV 172
           TGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V+
Sbjct: 134 TGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVI 183

[Close]

BLAST of Csor.00g237880 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-26
Identity = 74/166 (44.58%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRT 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF   R   R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLF--RRHNRRIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPKCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++PKC HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDR 177
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER 180

[Close]

BLAST of Csor.00g237880 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-26
Identity = 66/153 (43.14%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRTAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL       S P  R      F  +P  ++ P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLR-----SSPFNRTTAASTFFTDP--SSTPGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPKCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS ++      +S+ + V I + +P  G+
Sbjct: 121 CPLCRSLIEPFAGGVKSTMDEVAISISDPVYGD 146

[Close]

BLAST of Csor.00g237880 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 111.7 bits (278), Expect = 6.8e-25
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR-- 81
           Y+L+  I+L  VI+L   VIL++CFH Y R +LF   R+  R RRR   H    A  R  
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYAR-WLF--RRQNRRIRRRISAHLRSLAAARDP 81

Query: 82  --TAAPPRGLPQLVIKSLPLFVHSAKPDSDPI-YCAVCLSEFEENETGRVIPKCNHSFHV 141
             +++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+PKC H FHV
Sbjct: 82  TQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHV 141

Query: 142 GCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNLVEVDD 185
            CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+
Sbjct: 142 DCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDE 193

[Close]

BLAST of Csor.00g237880 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-21
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIF-VPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++PKCNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

The following BLAST results are available for this feature:

BLAST of Csor.00g237880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T5	2.2e-36	51.45	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q8LF65	1.3e-25	43.79	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
O22255	3.0e-25	44.58	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	9.5e-24	40.57	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9XF63	1.1e-19	34.68	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]

BLAST of Csor.00g237880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593982.1	3.19e-139	100.00	RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7026323.1	1.84e-138	99.49	RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022930361.1	2.15e-137	98.47	RING-H2 finger protein ATL2-like [Cucurbita moschata]	[more]
XP_023514956.1	1.15e-132	96.43	RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000152.1	2.28e-131	94.03	RING-H2 finger protein ATL2-like [Cucurbita maxima]	[more]

BLAST of Csor.00g237880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQQ3	1.04e-137	98.47	RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111436830 P...	[more]
A0A6J1KCT9	1.10e-131	94.03	RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111494436 PE=...	[more]
A0A6J1CAT0	7.14e-76	71.02	RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111009784 ...	[more]
A0A6J1H376	2.50e-74	68.25	RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111459976 P...	[more]
A0A6J1L074	3.96e-73	65.20	RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111499181 PE=...	[more]

BLAST of Csor.00g237880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16720.1	1.6e-37	51.45	TOXICOS EN LEVADURA 2	[more]
AT2G47560.1	2.1e-26	44.58	RING/U-box superfamily protein	[more]
AT4G15975.1	6.1e-26	43.14	RING/U-box superfamily protein	[more]
AT3G62690.1	6.8e-25	40.57	AtL5	[more]
AT1G72310.1	7.7e-21	34.68	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 111..152 e-value: 1.4E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 110..153 e-value: 1.6E-11 score: 44.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 111..153 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 89..163 e-value: 9.8E-19 score: 68.4
None	No IPR available	PANTHER	PTHR45768:SF34	RING-H2 FINGER PROTEIN ATL64	coord: 21..173
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 21..173
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 111..153 e-value: 2.96112E-17 score: 70.0315
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g237880.m01	Csor.00g237880.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane