Csor.00g237220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCCAAACATTGGCCCGAGAAGAAGAAAAAAGTTTGGATCCAATCCAAATTAGAAAAGAGGAAAGGACATTAAGATCCCAAATTTCACGCCAAAACTCGACATCAAAATTGAGCTTTTTCCCTGTAATCTTCGTTGTGATTTTAGAGGAACTTTACAGAGACAGAGAGCAAGCGATAGTGCGGGTAGTTAATTGTTGGTGTTTTTGCCATTGATGGGCGGATTGGGATTGAGATTTAAGCCAGTTTGCTATTTTTTTAGTGGTAAAACCTAGCCAAGAAATCTGGCTAACCTTGGGGGATTGAGGGCTCGCTTGTCGTTGAAGCATTCCGTTTCCGATCACAACGACGACGAGGAAGTGTGCAGGCCTTGGCGTCGCAGGCTTTTTATGGCTTTTACATGGCGCTCCGCCCTCAAGATTACCGCCGCACTTCTACTTCTTGCTGCTGTAGTAACTGCTTGTTTCACCCTCCCAATCGAGAAGGTATCAAATTGTCGTTTTCAATAATTATTTCTCCTGCATTCTTGTTTCTCGTTCTCTATTTGGTTGATGGCTATTGCTCGTGGATTTTTCTTAATTTGCCACGGTTCTGGAAGTTATTTGAGATGGCATATCCATATCCATATCCATTTCCATTTCCATTTCCATCTGTTCTTGAATTGTGTTTGAGTTTTAAATTTGGGCTCTAAACTATTCGATCAAATTACTGGTCTCTGTGTAAGAGTTTGTTCAAATTTTATCTTCCTTCCACGGGAAAGTATTGATTAATGTGTCTGTGTTTCAATTTATAGGGTGTTTAGTTGTTTCAACTGATGAGCTATATGCTTGAAGTCTATGTGCTAGCTTTCGAGGCTGAAAGATTCATGACGAATTACTCATTTCTAAGTTTTAGTGTAATGTCATACAATTTGTATCGAACTCATATTTGAAATTTGACATCATATTTCAGATTCTGAAGGACTTTTTACTATGGGTTGATCAAGATCTTGGTGCTTGGGGTCCACTTGTGCTGTAAGTTAATGTAGCCAGTCTCTTGTAGAACATTTCAAGTTGCTTTTAGATTTTGTATCTCCACCATCGCTTTCCTTTCCCCTCATTATTGTAGATATATTTGCAGGTCTGTTGCATACATTCCTTTGACAGTGTTGGCAGTTCCTGCCTCAATACTCACTGTAAGCATCAATTAATCCTTCGAATACCTGGTAAAAGGTATAATGTGTAGGGAAGAATGCCTCTAGAATGAACTTACTTTTATGAACTCAGATGGTTCTCATTATTTGTCTTTCAGCTTGGTGGTGGCTATCTATTTGGGTTGCCTGTGGGCTTTGTTGCTGATTCCATTGGTGCAACTGTTGGAGCTGGGGCAGCCTTCCTTCTTGGACGAACTGTAATATTCAAAACCTTATGGTTGTCTGTAATCCATAGATATTCTGTGAATTTTAGTATTTAAATATAGAATTATTATTAGGAAAGATCATTTTTTGTTTGCAATTCATAATTGCCATTATTGGATCAAATACGTTTCACTGCTAGTTGGATGACCATTCTTTTCTGGCATTCTTTACAGATTGGGAAGTCATTTGTTGTTTCCAAGCTGAAGGATTATCCACAGTTTCATTCAGTTGCCATTGCTATTAATCGGTCTGGATTTAAGGTTTGTCTAATTTGTTTATAATCACCTTGTTTGTCTACGGTTTTTGAGTAGCATATGGAGGAAGGCTGTCATCTGGAAATTCATGTTCCTTTCATGACTCTTCATCAATCTATAAAATCACCTGTTTCTTCTAGTTCAATGGAAACGAAATAACACCTTGTTTGTGTGGCTTCCAGTTTATTTGCTTTTTTTGTTTAATGTGGATAAACAGCATCGTGTGTCTCTTTAATACCAATTCTTGTTTATGGTCATACTTTGTATTGAACTAAAATACACAATATGTTTAGTCTGCTCATGAAACATTGGATGAAATGAATGGTAGCTTTTCCCCTTCCCCGTGAATGTCATGTATCTATTGGAAAAATGTTTCTTCCCTTACATTGCACGATAGGAAGCATACTGAGTTGTAAATGAAACCATATAGTAAATTTTGAAATGCAATCCGAGAGGTAAGAGATGATTCAAATGCATTTATTTTGCTAAACTATGATATATGATTTAAATAAATTGCGGGTTGGCTTTTCGTTTCTTTTTCAAAAAAGAAAAAAGAAAAAGAAAAATTGTAGGCTGGCAGCTGAGCGATTGTGAATGAGTGGAAGTTGATGTAGAATATTTGGCTATATAAACTGTTTCTTGGTGCCTGGAAGAAAAGTTAATTTGCATCTTAGTACCTATGAAGCAAGCTGGTGATATGAAATAAGTTATTATTTTGTTTTAATTAGATTGGCTTCCATGGTATTTGTATTTGAAATGACCGAGTACGGTACATGTTCATACTTCACCCAATGTGTCCATATGTCACCCGGGAACAGTGAGGACTAAGTTACACATAATATTGTTAGTGACCCAAAATCTTCACTTTTGCAGATAGTCTTACTGCTCCGGCTTGTGCCCTTACTTCCATTTAACATGTTGAATTACCTATTATCGGTGACTCCCGTTTCATTAGGGGAATACATGCTGGCTTCATGGTTGGGAATGATGGTAATTTCTGAACATTCTTCTTATAACATCTAAAGTAACCTAACGTATTTCAGATCACAATTTTGGCGTAACTTGTATGTTCATTAAAGTGCTCCTATGCAGGAGCACAAAATGTTGGTGGCTTTTGTTTCATTTGTTTGGTCATCTCTCAATGTAAAATGTATTAAATTCGTCTCTCCAAATTTTAGTTTTCTGTTTATCTGTAGTGCATGGATAGGCTTTTTTATATTGGAAGGAGTGATAACTTTATTGATTATGATGTCATGATACAGTTCAATCTATGAATATTGTAGTTTTCAGCCCTTTTGGCTCTTGTTCATCCATGATGATAACTTCATTGATTATGAAGGTTAATATTATATATGATTATGGATATAGTTCTAGAGGCTGAAAGAGAAATGGCAAGGTGCCTTGTACCATTTAGAAACATTTTGGGCGGATTATCTCTTCCCTACCCAAATCTAGCTCACTCTTAGCTTACCTCACCTTGGCCATAATTTTGGCACAAATACCCCCTCCGGGTGATTACCATGCTCGCTTGTTACAAAAATAATTTATTCCTGCTCTATTTTAAGGCTTGGGTAAGAATACCTCTTAATTGTTCTCTAGTCTTCACATATCTTGTGGACACCAACCCTTGTATTTTCTCAAGAATGAAATGGAAATCCACTTCAATATTAGAACATAACTTTGAATGTATGATTATAAAAAAGGACAACTATGCACAATAACACATATTTTATAACATAACTTAAACCGTCCCTTTAAGCCCTATATTATTCCCATGGCCCTTATTACCTCATGGCCATATATCATTCCCACTTGGCCAACCCATGATTGTTAGATAATTTTTAATATGTAGAGGGTCCTAGCATATTGGTTGGTTATTGTTGAATGATATGATATCTAGGCATACATTGTTCTACATCGAGGTGAAAGATGGTAATTATACAAATTAGTGATTCTTTGTTTTATTTCTTTTCTTTTGCATGTGGGCATGATTCACATCTCTATGCTGAGGAATCATGACATGCTTTGTAAATGTCTTGATTTATCAACTTCAGGTACTAATTTTAAGATTTTGATCCATCCCCGTCTCTATTGTAGCCCATCACCTTTGCATTAGTATATGTTGGAACCACACTCAAAGATCTTTCTGATGTTACACATGGTTGGGGAGAATTTTCAAAGACTCGTTGGGTAAGTGCTTTTTATCTTCAATGTTGGAGAGGGAATGTAACACATCTCTTTTATGGCATGTTCCTAGACAGCCCAAAGTAACACTAACCTCATGAACTAAGAATATTCATTTATCAAAAATATGTTACCGAAGTACCACTGATATTTGAAGAGCTTCCACGCTAAATATATCTTGTGTTCTTTCTCGTCTGATGCATCTTCTCTCCTTTATTTGTGGATGCAGGCATTCATAATGTTAGGTCTTGTGGTATCTGGTAAGTATTCTTTGCAGAAACTTGTACCCTTTTTCTGGGTTTTCTTTTCTTGTTTGTTTTTTGTTTGGCTGGGTACATTTCTATGAAGAAAAAAGATGGGCAATAATTCTCAAGAACAGTGCGAACGGTGCCAGACAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAGGTTGTTTAGTCTTATTTAAAAAATATTTGTTTCTTGTATGCCATCTGCTACTCAGCAGGAAAAATCTTTGAGCATCTTTGTCATCGTAATGTGATACGTCAATTAAAATAATTAAAACAACATTGAATGCTTCAGGTGGAAGAAGAGTGCTTAATAATTAAAATAGTATTTGATATTCGGCTTTAATTTGTAGTAAACTGAGACATTGAACTTGACTCAATTAAAGATAAAAGGAAAAAAGAAAGAAAGAAGATGGAACGTACCCCAAGCCCCTTTTCTGACATTGATTTGCATGCAGTGGTTCTGGCGTACTGCGTTACCAGAGTTGCCAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAACGGAGATGCTGTTGACTATTTGGGTATCTCCTCGCAGCTACCCATCGTAGCTGAATCAGCGCCTGTCGATCTTAATCAGCCCCTCATAATCAAGATTGACTCTCCTCCAGATGACTGCAAATGA ATGATCCAAACATTGGCCCGAGAAGAAGAAAAAAGTTTGGATCCAATCCAAATTAGAAAAGAGGAAAGGACATTAAGATCCCAAATTTCACGCCAAAACTCGACATCAAAATTGAGCTTTTTCCCTGTAATCTTCGTTGTGATTTTAGAGGAACTTTACAGAGACAGAGAGCAAGCGATAGTGCGGCCAAGAAATCTGGCTAACCTTGGGGGATTGAGGGCTCGCTTGTCGTTGAAGCATTCCGTTTCCGATCACAACGACGACGAGGAAGTGTGCAGGCCTTGGCGTCGCAGGCTTTTTATGGCTTTTACATGGCGCTCCGCCCTCAAGATTACCGCCGCACTTCTACTTCTTGCTGCTGTAGTAACTGCTTGTTTCACCCTCCCAATCGAGAAGATTCTGAAGGACTTTTTACTATGGGTTGATCAAGATCTTGGTGCTTGGGGTCCACTTGTGCTGTCTGTTGCATACATTCCTTTGACAGTGTTGGCAGTTCCTGCCTCAATACTCACTCTTGGTGGTGGCTATCTATTTGGGTTGCCTGTGGGCTTTGTTGCTGATTCCATTGGTGCAACTGTTGGAGCTGGGGCAGCCTTCCTTCTTGGACGAACTATTGGGAAGTCATTTGTTGTTTCCAAGCTGAAGGATTATCCACAGTTTCATTCAGTTGCCATTGCTATTAATCGGTCTGGATTTAAGATAGTCTTACTGCTCCGGCTTGTGCCCTTACTTCCATTTAACATGTTGAATTACCTATTATCGGTGACTCCCGTTTCATTAGGGGAATACATGCTGGCTTCATGGTTGGGAATGATGCCCATCACCTTTGCATTAGTATATGTTGGAACCACACTCAAAGATCTTTCTGATGTTACACATGGTTGGGGAGAATTTTCAAAGACTCGTTGGGCATTCATAATGTTAGGTCTTGTGGTATCTGTGGTTCTGGCGTACTGCGTTACCAGAGTTGCCAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAACGGAGATGCTGTTGACTATTTGGGTATCTCCTCGCAGCTACCCATCGTAGCTGAATCAGCGCCTGTCGATCTTAATCAGCCCCTCATAATCAAGATTGACTCTCCTCCAGATGACTGCAAATGA ATGATCCAAACATTGGCCCGAGAAGAAGAAAAAAGTTTGGATCCAATCCAAATTAGAAAAGAGGAAAGGACATTAAGATCCCAAATTTCACGCCAAAACTCGACATCAAAATTGAGCTTTTTCCCTGTAATCTTCGTTGTGATTTTAGAGGAACTTTACAGAGACAGAGAGCAAGCGATAGTGCGGCCAAGAAATCTGGCTAACCTTGGGGGATTGAGGGCTCGCTTGTCGTTGAAGCATTCCGTTTCCGATCACAACGACGACGAGGAAGTGTGCAGGCCTTGGCGTCGCAGGCTTTTTATGGCTTTTACATGGCGCTCCGCCCTCAAGATTACCGCCGCACTTCTACTTCTTGCTGCTGTAGTAACTGCTTGTTTCACCCTCCCAATCGAGAAGATTCTGAAGGACTTTTTACTATGGGTTGATCAAGATCTTGGTGCTTGGGGTCCACTTGTGCTGTCTGTTGCATACATTCCTTTGACAGTGTTGGCAGTTCCTGCCTCAATACTCACTCTTGGTGGTGGCTATCTATTTGGGTTGCCTGTGGGCTTTGTTGCTGATTCCATTGGTGCAACTGTTGGAGCTGGGGCAGCCTTCCTTCTTGGACGAACTATTGGGAAGTCATTTGTTGTTTCCAAGCTGAAGGATTATCCACAGTTTCATTCAGTTGCCATTGCTATTAATCGGTCTGGATTTAAGATAGTCTTACTGCTCCGGCTTGTGCCCTTACTTCCATTTAACATGTTGAATTACCTATTATCGGTGACTCCCGTTTCATTAGGGGAATACATGCTGGCTTCATGGTTGGGAATGATGCCCATCACCTTTGCATTAGTATATGTTGGAACCACACTCAAAGATCTTTCTGATGTTACACATGGTTGGGGAGAATTTTCAAAGACTCGTTGGGCATTCATAATGTTAGGTCTTGTGGTATCTGTGGTTCTGGCGTACTGCGTTACCAGAGTTGCCAAGGCTGCTTTGGAAAAAGCTTTGGCCGAGAACGGAGATGCTGTTGACTATTTGGGTATCTCCTCGCAGCTACCCATCGTAGCTGAATCAGCGCCTGTCGATCTTAATCAGCCCCTCATAATCAAGATTGACTCTCCTCCAGATGACTGCAAATGA MIQTLAREEEKSLDPIQIRKEERTLRSQISRQNSTSKLSFFPVIFVVILEELYRDREQAIVRPRNLANLGGLRARLSLKHSVSDHNDDEEVCRPWRRRLFMAFTWRSALKITAALLLLAAVVTACFTLPIEKILKDFLLWVDQDLGAWGPLVLSVAYIPLTVLAVPASILTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGKSFVVSKLKDYPQFHSVAIAINRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVSLGEYMLASWLGMMPITFALVYVGTTLKDLSDVTHGWGEFSKTRWAFIMLGLVVSVVLAYCVTRVAKAALEKALAENGDAVDYLGISSQLPIVAESAPVDLNQPLIIKIDSPPDDCK Homology
BLAST of Csor.00g237220 vs. ExPASy Swiss-Prot
Match: Q55909 (TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0305 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.0e-29 Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy Swiss-Prot
Match: Q6YI46 (Transmembrane protein 64 OS=Homo sapiens OX=9606 GN=TMEM64 PE=2 SV=2) HSP 1 Score: 78.2 bits (191), Expect = 2.2e-13 Identity = 68/245 (27.76%), Postives = 123/245 (50.20%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy Swiss-Prot
Match: P76219 (TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli (strain K12) OX=83333 GN=ydjX PE=3 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 7.2e-12 Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy Swiss-Prot
Match: P9WFS2 (TVP38/TMEM64 family membrane protein MT1538 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1538 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.7e-08 Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy Swiss-Prot
Match: P9WFS3 (TVP38/TMEM64 family membrane protein Rv1491c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1491c PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.7e-08 Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 0
BLAST of Csor.00g237220 vs. NCBI nr
Match: KAG6593916.1 (hypothetical protein SDJN03_13392, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 714 bits (1844), Expect = 3.97e-259 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
BLAST of Csor.00g237220 vs. NCBI nr
Match: KAG6575014.1 (hypothetical protein SDJN03_25653, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 551 bits (1419), Expect = 2.75e-195 Identity = 286/313 (91.37%), Postives = 298/313 (95.21%), Query Frame = 0
BLAST of Csor.00g237220 vs. NCBI nr
Match: KAG7013587.1 (hypothetical protein SDJN02_23754, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 534 bits (1375), Expect = 4.58e-188 Identity = 287/345 (83.19%), Postives = 297/345 (86.09%), Query Frame = 0
BLAST of Csor.00g237220 vs. NCBI nr
Match: XP_022930301.1 (uncharacterized protein LOC111436796 [Cucurbita moschata]) HSP 1 Score: 524 bits (1350), Expect = 1.75e-185 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Csor.00g237220 vs. NCBI nr
Match: XP_023000292.1 (uncharacterized protein LOC111494568 [Cucurbita maxima]) HSP 1 Score: 520 bits (1340), Expect = 5.83e-184 Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy TrEMBL
Match: A0A6J1EQJ6 (uncharacterized protein LOC111436796 OS=Cucurbita moschata OX=3662 GN=LOC111436796 PE=4 SV=1) HSP 1 Score: 524 bits (1350), Expect = 8.47e-186 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy TrEMBL
Match: A0A6J1KD88 (uncharacterized protein LOC111494568 OS=Cucurbita maxima OX=3661 GN=LOC111494568 PE=4 SV=1) HSP 1 Score: 520 bits (1340), Expect = 2.82e-184 Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy TrEMBL
Match: A0A0A0KC10 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237630 PE=4 SV=1) HSP 1 Score: 490 bits (1261), Expect = 3.00e-172 Identity = 259/273 (94.87%), Postives = 263/273 (96.34%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy TrEMBL
Match: A0A1S3C8Q0 (TVP38/TMEM64 family membrane protein slr0305-like OS=Cucumis melo OX=3656 GN=LOC103497924 PE=4 SV=1) HSP 1 Score: 488 bits (1257), Expect = 1.22e-171 Identity = 258/270 (95.56%), Postives = 262/270 (97.04%), Query Frame = 0
BLAST of Csor.00g237220 vs. ExPASy TrEMBL
Match: A0A498IBM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041506 PE=4 SV=1) HSP 1 Score: 486 bits (1252), Expect = 2.09e-169 Identity = 254/308 (82.47%), Postives = 280/308 (90.91%), Query Frame = 0
BLAST of Csor.00g237220 vs. TAIR 10
Match: AT5G19070.1 (SNARE associated Golgi protein family ) HSP 1 Score: 380.2 bits (975), Expect = 1.9e-105 Identity = 193/269 (71.75%), Postives = 228/269 (84.76%), Query Frame = 0
BLAST of Csor.00g237220 vs. TAIR 10
Match: AT1G03260.1 (SNARE associated Golgi protein family ) HSP 1 Score: 347.8 bits (891), Expect = 1.1e-95 Identity = 178/268 (66.42%), Postives = 221/268 (82.46%), Query Frame = 0
BLAST of Csor.00g237220 vs. TAIR 10
Match: AT1G22850.1 (SNARE associated Golgi protein family ) HSP 1 Score: 95.5 bits (236), Expect = 9.6e-20 Identity = 75/228 (32.89%), Postives = 120/228 (52.63%), Query Frame = 0
BLAST of Csor.00g237220 vs. TAIR 10
Match: AT4G09580.1 (SNARE associated Golgi protein family ) HSP 1 Score: 63.2 bits (152), Expect = 5.3e-10 Identity = 65/253 (25.69%), Postives = 106/253 (41.90%), Query Frame = 0
BLAST of Csor.00g237220 vs. TAIR 10
Match: AT1G12450.1 (SNARE associated Golgi protein family ) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-07 Identity = 69/228 (30.26%), Postives = 101/228 (44.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|