Csor.00g236530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g236530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr08: 7127895 .. 7128245 (+)
RNA-Seq ExpressionCsor.00g236530
SyntenyCsor.00g236530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

mRNA sequence

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Protein sequence

MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Homology
BLAST of Csor.00g236530 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.1e-06
Identity = 48/117 (41.03%), Postives = 62/117 (52.99%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL               +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL---------------A 83

Query: 65  GSISSSSSHHH----HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 116
            S++SS    H     +      E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  PSLTSSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

BLAST of Csor.00g236530 vs. NCBI nr
Match: KAG6593848.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026180.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 4.83e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116

BLAST of Csor.00g236530 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 216 bits (549), Expect = 2.50e-70
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR SG AARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSGSISSSSSHHHHHHHHH KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHH-KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of Csor.00g236530 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 215 bits (548), Expect = 3.33e-70
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSGSISSSSSHHHHHHH   KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHH---KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of Csor.00g236530 vs. NCBI nr
Match: XP_023515028.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210 bits (535), Expect = 3.10e-68
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSG+ISSS    HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGAISSS----HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112

BLAST of Csor.00g236530 vs. NCBI nr
Match: XP_038875425.1 (uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 168 bits (425), Expect = 1.78e-51
Identity = 94/117 (80.34%), Postives = 98/117 (83.76%), Query Frame = 0

Query: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR SG + R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSGASGRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
            DS   SSSSS HHHH     KESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  PDSREASSSSSQHHHH-----KESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 111

BLAST of Csor.00g236530 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 1.21e-70
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR SG AARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSGSISSSSSHHHHHHHHH KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHH-KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of Csor.00g236530 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.61e-70
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           DSGSISSSSSHHHHHHH   KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHH---KESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of Csor.00g236530 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 1.66e-50
Identity = 97/128 (75.78%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S T  R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADS------GSISSSSSHHHHHHHHHH-----KESEPEKPPVFKKWQHPAAPFHYDSGSR 116
            DS       S SSSSSHHHHHHH HH     KE E EK PVFKKWQHPAAPFHYDSG R
Sbjct: 61  PDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPR 120

BLAST of Csor.00g236530 vs. ExPASy TrEMBL
Match: A0A0A0LLJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 2.68e-45
Identity = 86/106 (81.13%), Postives = 92/106 (86.79%), Query Frame = 0

Query: 18  PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSS-PTEIQNW-TADS---GSISSSSSHH 77
           PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSS P +I +W T DS    S +SSSSHH
Sbjct: 14  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHH 73

Query: 78  HH--HHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116
           HH  HHHHHHKES+PEK PVFKKWQHPAAPFHYDSG+RAPR FVPV
Sbjct: 74  HHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPR-FVPV 118

BLAST of Csor.00g236530 vs. ExPASy TrEMBL
Match: A0A6J1CA35 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009774 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 2.43e-38
Identity = 82/119 (68.91%), Postives = 88/119 (73.95%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQ-PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA++QRR SG  +R+QQ PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60

Query: 61  ADSGSISSSSSHHHHHHHHHHKESEPEKPPV--FKKWQHPAAPFHYDSGSRAPRAFVPV 116
             S S                + S+PEKPPV   KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  EPSTSS---------------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 103

BLAST of Csor.00g236530 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 48/116 (41.38%), Postives = 59/116 (50.86%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPLVS-PSSPTEIQN 60
           M+ + R  SG+  RK   SRLQRRAP  L+I+   ++WKVAIPLLSP  S P  P  +  
Sbjct: 1   MSSTARNISGSGNRKS--SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMK 60

Query: 61  WTADSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAF 114
                                     E EKPPVFKKWQHPAAPF+Y     + + F
Sbjct: 61  ------------------REEQRWGKEAEKPPVFKKWQHPAAPFYYQPAPSSNQPF 96

BLAST of Csor.00g236530 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-09
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 0

Query: 15  KQQPSRLQRRAPASLQI----SRSDWKVAIPLLSPL-VSPSSPTEIQNWTADSGSISSSS 74
           ++QPSRL +R PA   +    + ++W  AIPLLSPL +SP S         D   +  + 
Sbjct: 18  RRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESS------PVDQPPVEKNQ 77

Query: 75  SHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           S               EK PVFKKWQHPAAPF+Y+S +  P  FVPV
Sbjct: 78  S----------TAVAVEKTPVFKKWQHPAAPFYYESSTFVP-PFVPV 107

BLAST of Csor.00g236530 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 48/117 (41.03%), Postives = 62/117 (52.99%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL               +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL---------------A 83

Query: 65  GSISSSSSHHH----HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 116
            S++SS    H     +      E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  PSLTSSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NN023.1e-0641.03Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
KAG6593848.14.83e-75100.00putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]... [more]
XP_023000559.12.50e-7097.41uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima][more]
XP_022930471.13.33e-7097.41uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata][more]
XP_023515028.13.10e-6893.97uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_038875425.11.78e-5180.34uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1KKB81.21e-7097.41uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A6J1ER111.61e-7097.41uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A1S3CDB11.66e-5075.78uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN... [more]
A0A0A0LLJ82.68e-4581.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1[more]
A0A6J1CA352.43e-3868.91uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=... [more]
Match NameE-valueIdentityDescription
AT1G04330.11.6e-1041.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G23170.14.0e-0941.12unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G14450.12.2e-0741.03unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..116
NoneNo IPR availablePANTHERPTHR33912:SF2PUTATIVE-RELATEDcoord: 1..114
IPR040381Uncharacterized protein At4g14450-likePANTHERPTHR33912OS01G0939400 PROTEINcoord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g236530.m01Csor.00g236530.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus