Csor.00g232650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Location	Csor_Chr11: 14239078 .. 14239584 (+)
RNA-Seq Expression	Csor.00g232650
Synteny	Csor.00g232650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

mRNA sequence

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

Protein sequence

MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR

Homology

[Close]

BLAST of Csor.00g232650 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-50
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAP 61
           A+ TLL P     +P II       +     +H  RR+ LSL  T+++L      L PAP
Sbjct: 6   ATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPAP 65

Query: 62  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 121
             A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAELRE+SNSWVAKYRKEK+LLG+
Sbjct: 66  VSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGK 125

Query: 122 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Sbjct: 126 ASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Csor.00g232650 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-06
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 25  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRT 84
           +TI  + +  +   E L     V+ A   L  P     S  E    Y+K   EV+  +R 
Sbjct: 56  ATIEFSGLQAQASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRE 115

Query: 85  TIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFG 144
           ++K + K++     +    +ES   +++ +R +K++ G  S+ ++ + + A++  Y   G
Sbjct: 116 SLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAG 175

Query: 145 PTAPIPAKRKARILEEMETAEKAL 165
           P+AP+P + K  IL+++  AE+ L
Sbjct: 176 PSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Csor.00g232650 vs. NCBI nr
Match: KAG6589210.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022910.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324 bits (830), Expect = 1.76e-111
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (820), Expect = 5.90e-110
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 319 bits (817), Expect = 1.69e-109
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLIIPPKPKSTISAAA+HH RRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAIHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 316 bits (810), Expect = 1.98e-108
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASR LLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTISAAAVHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272 bits (696), Expect = 5.41e-91
Identity = 147/172 (85.47%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLP 60
           MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL P
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  PAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSL 120
           PAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKSL
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           LGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL
Match: A0A6J1ESI1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437168 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 8.20e-110
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLIIPPKPKSTISAAA+HH RRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAIHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL
Match: A0A6J1JL33 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486175 PE=3 SV=1)

HSP 1 Score: 316 bits (810), Expect = 9.57e-109
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPA 60
           MASR LLTPCTSKSQPLIIPPKPKSTISAAAVHH RRRELLSLTASVLAAPWVLLPPAPA
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTISAAAVHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 272 bits (696), Expect = 2.62e-91
Identity = 147/172 (85.47%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLP 60
           MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL P
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  PAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSL 120
           PAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKSL
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           LGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 272 bits (696), Expect = 2.62e-91
Identity = 147/172 (85.47%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAV----HHRRRRELLSLTASVLAAPWVLLP 60
           MAS TL+TP TSKSQPLIIP KPKS+ISAAA     H+ RRRE LSLTASVLA  WVL P
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  PAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSL 120
           PAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKSL
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           LGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 2.80e-83
Identity = 136/169 (80.47%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHR-RRRELLSLTASVLAAPWVLLPPAP 60
           MAS TL+TPCTSKSQ   IP KPKSTISAA      RRRE LSLTASVLA  +VL P +P
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 120
           A A++D+EYVKDTNEVI KVRTTI MD+NDPNVA AVA+LRESSN WVAKYRKEK+LLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168
           ASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Csor.00g232650 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 201.1 bits (510), Expect = 7.3e-52
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSL--TASVLAAPWVLLPPAP 61
           A+ TLL P     +P II       +     +H  RR+ LSL  T+++L      L PAP
Sbjct: 6   ATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPAP 65

Query: 62  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 121
             A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAELRE+SNSWVAKYRKEK+LLG+
Sbjct: 66  VSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGK 125

Query: 122 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Sbjct: 126 ASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Csor.00g232650 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 25  STISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDE---EYVKDTNEVINKVRT 84
           +TI  + +  +   E L     V+ A   L  P     S  E    Y+K   EV+  +R 
Sbjct: 56  ATIEFSGLQAQASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRE 115

Query: 85  TIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFG 144
           ++K + K++     +    +ES   +++ +R +K++ G  S+ ++ + + A++  Y   G
Sbjct: 116 SLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAG 175

Query: 145 PTAPIPAKRKARILEEMETAEKAL 165
           P+AP+P + K  IL+++  AE+ L
Sbjct: 176 PSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of Csor.00g232650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR64	1.0e-50	65.09	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9ZVZ9	4.5e-06	25.00	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Csor.00g232650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589210.1	1.76e-111	100.00	Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro...	[more]
XP_023529218.1	5.90e-110	98.81	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_022930794.1	1.69e-109	98.21	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022988975.1	1.98e-108	97.62	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022952622.1	5.41e-91	85.47	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]

BLAST of Csor.00g232650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESI1	8.20e-110	98.21	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]
A0A6J1JL33	9.57e-109	97.62	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1HZH1	2.62e-91	85.47	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O...	[more]
A0A6J1GKW7	2.62e-91	85.47	photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata...	[more]
A0A0A0K1S2	2.80e-83	80.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]

BLAST of Csor.00g232650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03600.1	7.3e-52	65.09	photosystem II family protein	[more]
AT1G05385.1	3.2e-07	25.00	photosystem II 11 kDa protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 63..164 e-value: 9.1E-34 score: 116.8
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..168
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 35..164 score: 23.224579
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 63..168 e-value: 1.4E-41 score: 143.2
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232650.m01	Csor.00g232650.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071484	cellular response to light intensity
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II