Csor.00g232460 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g232460
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 14330643 .. 14331653 (-)
RNA-Seq ExpressionCsor.00g232460
SyntenyCsor.00g232460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGGAATGACTTTTCAATTGGCTTTAAAGCATTTGAAAAGCATGGTAGTGTCATGTGCTTAGATCATTCTGTACACCGCATGATTTGATTGGGAATAAACTAAGGTATCATTCCTTTATGCTCTCTATATACCTCTTCATGTCGTCAAATTTTGGTTCCATGTAAAACCACACTGCATCTTCCTTTTATGGATTCTTCCACACCTTTTTCCTTCTAAAATACTTCTTCTAAACTTTAATAAATTAATATATATATATATATATTTCTAATATTTTAAATACATTAAAAAATTATCATTATTAAGTTTGTTCTAATAATACTCTCTATTGAAAATATTTTTAAAATATTTTTGACCCTTAAAAAAATATTAAAAAATACTTTTATTCTAAGTTTGATGACCCTTGAAAAAATATTAAAAAATACTTTTATAATTTTTTCATATTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAACGAAAACGAAAACGGAAACGGAAACAAATTCAGCGAATAACTGAATATCGAATTTGTGATCACGAAGCTTGCTCTGGCATTTCAATCTTCGAGAAGGAAGAAATTGGCAAGCCAACTGATTCAAATCGAACAAGAATTTTGCAGTTGGCATACATTCAGCGTTATCCGCATTGAAGTAATCGTCAAAACCCACCGTTTCCGTCCTTTTTCATTCTTCAATCTCCGCGAAGAACAGAGCAGAGCGGAAATAACCACAATCTGTCTTCTGGACGATCGGAAATATCCAATCTCACTCCCAACTTGCGAAGGCGATCGTTCTTCCTCTCTCACATTCCATCTGTATCGAATTCTGATTCTGAGATGTGCTCCCAATTCCGTTCGTGGGTATCGATCCCTCGCCACTAGCTACGTATGTTCCTCAATCCTTATAACAATATTTTGCTTCTCATTTCAATGCCAGATTATTCACCGATCTATTTCATTCACTCGCAGACTTAA

mRNA sequence

ATGGAATTTGGAATGACTTTTCAATTGGCTTTAAAGCATTTGAAAAGCATGCTTGCTCTGGCATTTCAATCTTCGAGAAGGAAGAAATTGGCAAGCCAACTGATTCAAATCGAACAAGAATTTTGCAGTTGGCATACATTCAGCGTTATCCGCATTGAAGTAATCGTCAAAACCCACCGTTTCCGTCCTTTTTCATTCTTCAATCTCCGCGAAGAACAGAGCAGAGCGGAAATAACCACAATCTGTCTTCTGGACGATCGGAAATATCCAATCTCACTCCCAACTTGCGAAGGCGATCGTTCTTCCTCTCTCACATTCCATCTGTATCGAATTCTGATTCTGAGATGTGCTCCCAATTCCGTTCGTGGGTATCGATCCCTCGCCACTAGCTACACTTAA

Coding sequence (CDS)

ATGGAATTTGGAATGACTTTTCAATTGGCTTTAAAGCATTTGAAAAGCATGCTTGCTCTGGCATTTCAATCTTCGAGAAGGAAGAAATTGGCAAGCCAACTGATTCAAATCGAACAAGAATTTTGCAGTTGGCATACATTCAGCGTTATCCGCATTGAAGTAATCGTCAAAACCCACCGTTTCCGTCCTTTTTCATTCTTCAATCTCCGCGAAGAACAGAGCAGAGCGGAAATAACCACAATCTGTCTTCTGGACGATCGGAAATATCCAATCTCACTCCCAACTTGCGAAGGCGATCGTTCTTCCTCTCTCACATTCCATCTGTATCGAATTCTGATTCTGAGATGTGCTCCCAATTCCGTTCGTGGGTATCGATCCCTCGCCACTAGCTACACTTAA

Protein sequence

MEFGMTFQLALKHLKSMLALAFQSSRRKKLASQLIQIEQEFCSWHTFSVIRIEVIVKTHRFRPFSFFNLREEQSRAEITTICLLDDRKYPISLPTCEGDRSSSLTFHLYRILILRCAPNSVRGYRSLATSYT
Homology
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BLAST of Csor.00g232460 vs. NCBI nr
Match: KAG6589229.1 (hypothetical protein SDJN03_17794, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (666), Expect = 1.21e-87
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MEFGMTFQLALKHLKSMLALAFQSSRRKKLASQLIQIEQEFCSWHTFSVIRIEVIVKTHR 60
           MEFGMTFQLALKHLKSMLALAFQSSRRKKLASQLIQIEQEFCSWHTFSVIRIEVIVKTHR
Sbjct: 1   MEFGMTFQLALKHLKSMLALAFQSSRRKKLASQLIQIEQEFCSWHTFSVIRIEVIVKTHR 60

Query: 61  FRPFSFFNLREEQSRAEITTICLLDDRKYPISLPTCEGDRSSSLTFHLYRILILRCAPNS 120
           FRPFSFFNLREEQSRAEITTICLLDDRKYPISLPTCEGDRSSSLTFHLYRILILRCAPNS
Sbjct: 61  FRPFSFFNLREEQSRAEITTICLLDDRKYPISLPTCEGDRSSSLTFHLYRILILRCAPNS 120

Query: 121 VRGYRSLATSYT 132
           VRGYRSLATSYT
Sbjct: 121 VRGYRSLATSYT 132

The following BLAST results are available for this feature:
BLAST of Csor.00g232460 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g232460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589229.11.21e-87100.00hypothetical protein SDJN03_17794, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g232460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g232460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g232460.m01Csor.00g232460.m01mRNA