Csor.00g232430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Csor_Chr11: 14352839 .. 14353378 (+)
RNA-Seq Expression	Csor.00g232430
Synteny	Csor.00g232430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

mRNA sequence

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Coding sequence (CDS)

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Protein sequence

MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP

Homology

[Close]

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-75
Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           YLR+VRECQAKARGIPYKKKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-62
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 18  SSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           R+VR+ QAKARGIPY+KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-62
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 18  SSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           R+VR+ QAKARGIPY+KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-60
Identity = 110/161 (68.32%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 72
           G  +    QPV   P         SRYESQKRRDWNTF QYLKN RPP+ L+ CS  HV+
Sbjct: 5   GGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVI 64

Query: 73  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 132
           EFL+YLDQFGKTKVH  GC +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEESG +P
Sbjct: 65  EFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAP 124

Query: 133 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQ 165
           E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K T   Q
Sbjct: 125 ESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQ 165

[Close]

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-60
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 72
           G+ + +  QPV   P         SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+
Sbjct: 7   GADAQAQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVI 66

Query: 73  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 132
           EFL+YLDQFGKTKVH  GC +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEESG +P
Sbjct: 67  EFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAP 126

Query: 133 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQ 165
           E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K T   Q
Sbjct: 127 ESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQ 167

[Close]

BLAST of Csor.00g232430 vs. NCBI nr
Match: KAG6589232.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376 bits (965), Expect = 1.05e-131
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Csor.00g232430 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 373 bits (958), Expect = 1.23e-130
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Csor.00g232430 vs. NCBI nr
Match: XP_023530720.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372 bits (954), Expect = 5.00e-130
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG TKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGTKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Csor.00g232430 vs. NCBI nr
Match: KAG7022931.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (949), Expect = 2.79e-129
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK-TTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Csor.00g232430 vs. NCBI nr
Match: XP_022988968.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 362 bits (929), Expect = 3.13e-126
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK-TTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 373 bits (958), Expect = 5.94e-131
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 362 bits (929), Expect = 1.52e-126
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK-TTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 316 bits (809), Expect = 4.26e-108
Identity = 156/188 (82.98%), Postives = 165/188 (87.77%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGA------EDS 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT+T NQ+KG         S
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 1.48e-106
Identity = 156/189 (82.54%), Postives = 166/189 (87.83%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTT-NQSKGA------ED 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT++T NQ+KG         
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 3.47e-105
Identity = 156/189 (82.54%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 1   MSFEGAT--KDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG++  KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTT--TNQSKGAED---- 179
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT   T  S G +D    
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

[Close]

BLAST of Csor.00g232430 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-76
Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           YLR+VRECQAKARGIPYKKKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Csor.00g232430 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-76
Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           YLR+VRECQAKARGIPYKKKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Csor.00g232430 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-60
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 0


Query: 8   KDFSEGSSS-TSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHC 67
           K  +EGSS   S PQP    P         SRYESQKRRDWNTFCQYL+NQ+PPV +S C
Sbjct: 9   KGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQC 68

Query: 68  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 127
             NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLRAA+E
Sbjct: 69  GSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFE 128

Query: 128 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKKTTTTNQSKGAEDSTS 174
           E+GG PE NPFA G IRV+LR+VR+ QAKARG+PYKK KK+K     +S   ED T+
Sbjct: 129 ENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTT 185

[Close]

BLAST of Csor.00g232430 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-59
Identity = 105/150 (70.00%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQF 72
           G S  SSP    + PSRYESQKRRDWNTF QYLKN +PP+ LS CS  HV+EFL+YLDQF
Sbjct: 18  GPSFVSSPP---ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 77

Query: 73  GKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGA 132
           GKTKVHV  C ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE+GG P++NPFA+ A
Sbjct: 78  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 137

Query: 133 IRVYLRDVRECQAKARGIPYKKKKKKTTTT 163
           +R+YLR+VRE QAKARGIPY+KKK+K   T
Sbjct: 138 VRIYLREVRESQAKARGIPYEKKKRKRPPT 164

[Close]

BLAST of Csor.00g232430 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 225.3 bits (573), Expect = 3.8e-59
Identity = 112/162 (69.14%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 7   TKDFSEGSSSTSS-------PQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSC 66
           TKD  +  SS+S+       PQP   + SRYESQKRRDWNTF QYLK+Q PP+ +S    
Sbjct: 9   TKDPPDHPSSSSNHHKQPLPPQPQQPL-SRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 68

Query: 67  NHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE- 126
            HVL FLRYLDQFGKTKVH Q C+F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE 
Sbjct: 69  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 128

Query: 127 SGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT 161
            GGSP+TNPFA+G+IRV+LR+VRE QAKARGIPY+KKK++ T
Sbjct: 129 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKT 169

The following BLAST results are available for this feature:

BLAST of Csor.00g232430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.2e-75	85.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	1.6e-62	71.79	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.6e-62	71.79	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q6ATW6	2.0e-60	68.32	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
A2Y5N0	2.6e-60	67.70	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of Csor.00g232430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589232.1	1.05e-131	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022930813.1	1.23e-130	99.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
XP_023530720.1	5.00e-130	98.88	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
KAG7022931.1	2.79e-129	99.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022988968.1	3.13e-126	97.21	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]

BLAST of Csor.00g232430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWG4	5.94e-131	99.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	1.52e-126	97.21	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3C1B9	4.26e-108	82.98	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	1.48e-106	82.54	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K2D1	3.47e-105	82.54	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]

BLAST of Csor.00g232430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.5e-76	85.44	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.5e-76	85.44	Protein of unknown function (DUF640)	[more]
AT1G78815.1	2.7e-60	63.84	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.2e-59	70.00	Protein of unknown function (DUF640)	[more]
AT4G18610.1	3.8e-59	69.14	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..142 e-value: 1.6E-65 score: 218.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 80.158211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 6..177
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 6..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232430.m01	Csor.00g232430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus