Csor.00g230160 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g230160
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcriptional elongation regulator MINIYO
Location	Csor_Chr20: 3545504 .. 3546467 (+)
RNA-Seq Expression	Csor.00g230160
Synteny	Csor.00g230160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGACACAGAGCAGTAGAAGAAGCCAACCCAAAAGCTCGGCACGCGGGAAGGTCTTTGGGACCAACGCTCTTCAGCTAAGTGAGCACGATGCCTCGCGATTAGTCGGTGGAATAGTTGAAAAAGGTATCTCAGATGCTGAGCAAAGCAAGCCGTTTGCCCCGGTTGCCCCTCCCAGACCTTCCGTTTTGCCGTTTCCGGTCGCTCGGCATCGGTCTCATGGTCCGGTGAGATTTCACTTTGGCTGTTTCATCTATTTGTAGTGCAGGCCATTTCTATGCTTAACTAGATTTTTCTTTTTTCAATTAGTTTAACTTGATTTTAAGGTAGTCGGAAGGAGAGTCTACTGATGTAGGTTTTTTTAAAAAATTCTAAACTTCAATGTTGTGCAATATGATCTGAAGAAAGGAAATGAGAGTGTCTCAGTAGACATCAAAATTAACAGAATGTTTGAATTTTTTTATTTTTTTTTTATTTTTTTTTTATTATTTTTTTTTTTTAGTAGCGTTTCTCCAGGAGCAAATAGATTAATTTAAAGAACATAAGTCCCTGGCCCGCACTATATTTTCCTCATATTAACGGATTTTGGAGTCCGAATGTTATTAATAATCCAATCTGTTTTTTCAGCATTGGGAATCAGTTACTAGTAAAATGGGTGGGAATAACATCAGAGATGACCGGCGTGGGGACGAGGAAGAAGATGAAAGATTGATGGAGATTGACTCTATAGCGAATTTTGCTAATCCAATACAAAGGAAAAAGAAAAGTAGCTTAGACTTTGGCAGGTGGAGAGAGGCTGTTCCAGGTCACAACCATATTGCAGCAAGCGGAGAGGAAAATAAAGTTGCAAGCTTAGCAAAAACTGAAGACCTAATTCGTGCCGGGGAAGCAAATAGCACTATGGATAATATGTCATGTGAGCCCTTATCAGCTGGTGTGCTTGCACCTTCTTTATGA

mRNA sequence

ATGGAGAAGAAGACACAGAGCAGTAGAAGAAGCCAACCCAAAAGCTCGGCACGCGGGAAGGTCTTTGGGACCAACGCTCTTCAGCTAAGTGAGCACGATGCCTCGCGATTAGTCGGTGGAATAGTTGAAAAAGGTATCTCAGATGCTGAGCAAAGCAAGCCGTTTGCCCCGGTTGCCCCTCCCAGACCTTCCGTTTTGCCGTTTCCGGTCGCTCGGCATCGGTCTCATGGTCCGCATTGGGAATCAGTTACTAGTAAAATGGGTGGGAATAACATCAGAGATGACCGGCGTGGGGACGAGGAAGAAGATGAAAGATTGATGGAGATTGACTCTATAGCGAATTTTGCTAATCCAATACAAAGGAAAAAGAAAAGTAGCTTAGACTTTGGCAGGTGGAGAGAGGCTGTTCCAGGTCACAACCATATTGCAGCAAGCGGAGAGGAAAATAAAGTTGCAAGCTTAGCAAAAACTGAAGACCTAATTCGTGCCGGGGAAGCAAATAGCACTATGGATAATATGTCATGTGAGCCCTTATCAGCTGGTGTGCTTGCACCTTCTTTATGA

Coding sequence (CDS)

ATGGAGAAGAAGACACAGAGCAGTAGAAGAAGCCAACCCAAAAGCTCGGCACGCGGGAAGGTCTTTGGGACCAACGCTCTTCAGCTAAGTGAGCACGATGCCTCGCGATTAGTCGGTGGAATAGTTGAAAAAGGTATCTCAGATGCTGAGCAAAGCAAGCCGTTTGCCCCGGTTGCCCCTCCCAGACCTTCCGTTTTGCCGTTTCCGGTCGCTCGGCATCGGTCTCATGGTCCGCATTGGGAATCAGTTACTAGTAAAATGGGTGGGAATAACATCAGAGATGACCGGCGTGGGGACGAGGAAGAAGATGAAAGATTGATGGAGATTGACTCTATAGCGAATTTTGCTAATCCAATACAAAGGAAAAAGAAAAGTAGCTTAGACTTTGGCAGGTGGAGAGAGGCTGTTCCAGGTCACAACCATATTGCAGCAAGCGGAGAGGAAAATAAAGTTGCAAGCTTAGCAAAAACTGAAGACCTAATTCGTGCCGGGGAAGCAAATAGCACTATGGATAATATGTCATGTGAGCCCTTATCAGCTGGTGTGCTTGCACCTTCTTTATGA

Protein sequence

MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAPPRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQRKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSAGVLAPSL

Homology

[Close]

BLAST of Csor.00g230160 vs. ExPASy Swiss-Prot
Match: Q8GYU3 (Transcriptional elongation regulator MINIYO OS=Arabidopsis thaliana OX=3702 GN=IYO PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 37  LVGGIVEKGISDAEQSKPFAPVAPPRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDR 96
           LVG IVEKGIS   ++KP +   PPRPS+L FPVARHRSHGPH   V S +      +D 
Sbjct: 20  LVGSIVEKGIS---ENKPPSKPLPPRPSLLSFPVARHRSHGPHLAPVGSSIAQPKDYNDD 79

Query: 97  RGDEEEDERLMEIDSIANFANPIQRKKKSSLDFGRWREAV----PGHNHIAASGEENKVA 156
           + +EE +ER M  DSIA FA P+QRK+K  +D GRW++ V    P   H+     + K+ 
Sbjct: 80  QEEEEAEERFMNADSIAAFAKPLQRKEKKDMDLGRWKDMVSGDDPASTHVPQQSRKLKI- 139

Query: 157 SLAKTEDLIRAGEANSTMDN 173
            +      + + +A +T  N
Sbjct: 140 -IETRPPYVASADAATTSSN 154

[Close]

BLAST of Csor.00g230160 vs. NCBI nr
Match: KAG6571000.1 (Transcriptional elongation regulator MINIYO, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369 bits (947), Expect = 1.08e-128
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP
Sbjct: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. NCBI nr
Match: KAG7010830.1 (Transcriptional elongation regulator MINIYO [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364 bits (934), Expect = 2.82e-113
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKK QSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKAQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. NCBI nr
Match: XP_022943843.1 (transcriptional elongation regulator MINIYO [Cucurbita moschata])

HSP 1 Score: 360 bits (923), Expect = 9.36e-112
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKK QSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKAQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEI+SIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIESIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTE LIRAGEANSTMDNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEHLIRAGEANSTMDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. NCBI nr
Match: XP_023512432.1 (transcriptional elongation regulator MINIYO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (905), Expect = 2.97e-109
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQSSRRSQPKSSAR KVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKTQSSRRSQPKSSARAKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGG+NIRDDR GDEEEDERLMEIDSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGDNIRDDRPGDEEEDERLMEIDSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNH AASGEENKVASLAKTEDLIRAGEAN+T DNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHDAASGEENKVASLAKTEDLIRAGEANNTRDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. NCBI nr
Match: XP_022985672.1 (transcriptional elongation regulator MINIYO [Cucurbita maxima])

HSP 1 Score: 350 bits (897), Expect = 3.73e-108
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQSSRRSQPKSSAR  VFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKTQSSRRSQPKSSARATVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGG+NIRDDRRGDEEEDERLMEIDSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGDNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNH AASGEENKVASLAKT++LIRAGEAN+T DNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHDAASGEENKVASLAKTKNLIRAGEANNTRDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL
Match: A0A6J1FXF4 (transcriptional elongation regulator MINIYO OS=Cucurbita moschata OX=3662 GN=LOC111448455 PE=3 SV=1)

HSP 1 Score: 360 bits (923), Expect = 4.53e-112
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKK QSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKAQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEI+SIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIESIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTE LIRAGEANSTMDNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEHLIRAGEANSTMDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL
Match: A0A6J1J5I2 (transcriptional elongation regulator MINIYO OS=Cucurbita maxima OX=3661 GN=LOC111483661 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 1.81e-108
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQSSRRSQPKSSAR  VFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFA VAP
Sbjct: 1   MEKKTQSSRRSQPKSSARATVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWESVTSKMGG+NIRDDRRGDEEEDERLMEIDSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGDNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREAVPGHNH AASGEENKVASLAKT++LIRAGEAN+T DNMSCEPLSA
Sbjct: 121 RKKKSSLDFGRWREAVPGHNHDAASGEENKVASLAKTKNLIRAGEANNTRDNMSCEPLSA 180

Query: 181 GVLAPSL 187
           GVLAPSL
Sbjct: 181 GVLAPSL 187

[Close]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL
Match: A0A5D3DK37 (Transcriptional elongation regulator MINIYO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00150 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 4.36e-84
Identity = 143/187 (76.47%), Postives = 155/187 (82.89%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQS RRSQ  SSAR KVFGTN+LQLSE DA+RLVGGIVEKG+SD+EQS PF   AP
Sbjct: 1   MEKKTQSCRRSQSNSSARAKVFGTNSLQLSEDDATRLVGGIVEKGVSDSEQSTPFFSPAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
            RPSVLPFPVARHRSHGPHWESVTSK GG+NI+ DR  D EEDE +M  DSIANFANPIQ
Sbjct: 61  -RPSVLPFPVARHRSHGPHWESVTSKKGGDNIKADRGEDGEEDETMMVADSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREA P HNH AA+ EE ++ SLAKT  L RAGEAN+  D+MSC P SA
Sbjct: 121 RKKKSSLDFGRWREASPDHNHGAANREEKELQSLAKTASLSRAGEANTGTDDMSCRPFSA 180

Query: 181 GVLAPSL 187
            VLAPSL
Sbjct: 181 HVLAPSL 186

[Close]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL
Match: A0A0A0KAE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124150 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 9.70e-81
Identity = 138/187 (73.80%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQS RRSQ  SSAR KVFGTN+L LSE D++RLVGGIVEKGISD EQS PF  + P
Sbjct: 1   MEKKTQSCRRSQSNSSARAKVFGTNSLHLSEDDSTRLVGGIVEKGISDTEQSTPFVSLPP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
           PRPSVLPFPVARHRSHGPHWES+TSK GG++I+ DR+   EEDE +M  DSIANFANPIQ
Sbjct: 61  PRPSVLPFPVARHRSHGPHWESLTSKKGGDSIKADRQKYGEEDETMMVADSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREA   HNH AA  EE ++ SLAKTE L+R+GEANS  D MSC P SA
Sbjct: 121 RKKKSSLDFGRWREAASDHNHGAAKREEKELQSLAKTESLMRSGEANSCTDVMSCRPFSA 180

Query: 181 GVLAPSL 187
            VL PSL
Sbjct: 181 HVL-PSL 186

[Close]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL
Match: A0A1S3BKC4 (LOW QUALITY PROTEIN: transcriptional elongation regulator MINIYO OS=Cucumis melo OX=3656 GN=LOC103490563 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 2.74e-80
Identity = 143/187 (76.47%), Postives = 155/187 (82.89%), Query Frame = 0


Query: 1   MEKKTQSSRRSQPKSSARGKVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFAPVAP 60
           MEKKTQS RRSQ  SSAR KVFGTN+LQLSE DA+RLVGGIVEKG+SD+EQS PF   AP
Sbjct: 1   MEKKTQSCRRSQSNSSARAKVFGTNSLQLSEDDATRLVGGIVEKGVSDSEQSTPFFSPAP 60

Query: 61  PRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDRRGDEEEDERLMEIDSIANFANPIQ 120
            RPSVLPFPVARHRSHGPHWESVTSK GG+NI+ DR  D EEDE +M  DSIANFANPIQ
Sbjct: 61  -RPSVLPFPVARHRSHGPHWESVTSKKGGDNIKADRGEDGEEDETMMVADSIANFANPIQ 120

Query: 121 RKKKSSLDFGRWREAVPGHNHIAASGEENKVASLAKTEDLIRAGEANSTMDNMSCEPLSA 180
           RKKKSSLDFGRWREA P HNH AA+ EE ++ SLAKT  L RAGEAN+  D+MSC P SA
Sbjct: 121 RKKKSSLDFGRWREASPDHNHGAANREEKELQSLAKTASLSRAGEANTGTDDMSCRPFSA 180

Query: 181 GVLAPSL 187
            VLAPSL
Sbjct: 181 HVLAPSL 186

[Close]

BLAST of Csor.00g230160 vs. TAIR 10
Match: AT4G38440.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 37  LVGGIVEKGISDAEQSKPFAPVAPPRPSVLPFPVARHRSHGPHWESVTSKMGGNNIRDDR 96
           LVG IVEKGIS   ++KP +   PPRPS+L FPVARHRSHGPH   V S +      +D 
Sbjct: 20  LVGSIVEKGIS---ENKPPSKPLPPRPSLLSFPVARHRSHGPHLAPVGSSIAQPKDYNDD 79

Query: 97  RGDEEEDERLMEIDSIANFANPIQRKKKSSLDFGRWREAV----PGHNHIAASGEENKVA 156
           + +EE +ER M  DSIA FA P+QRK+K  +D GRW++ V    P   H+     + K+ 
Sbjct: 80  QEEEEAEERFMNADSIAAFAKPLQRKEKKDMDLGRWKDMVSGDDPASTHVPQQSRKLKI- 139

Query: 157 SLAKTEDLIRAGEANSTMDN 173
            +      + + +A +T  N
Sbjct: 140 -IETRPPYVASADAATTSSN 154

The following BLAST results are available for this feature:

BLAST of Csor.00g230160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYU3	1.4e-21	42.86	Transcriptional elongation regulator MINIYO OS=Arabidopsis thaliana OX=3702 GN=I...	[more]

BLAST of Csor.00g230160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571000.1	1.08e-128	100.00	Transcriptional elongation regulator MINIYO, partial [Cucurbita argyrosperma sub...	[more]
KAG7010830.1	2.82e-113	98.93	Transcriptional elongation regulator MINIYO [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022943843.1	9.36e-112	97.86	transcriptional elongation regulator MINIYO [Cucurbita moschata]	[more]
XP_023512432.1	2.97e-109	96.26	transcriptional elongation regulator MINIYO [Cucurbita pepo subsp. pepo]	[more]
XP_022985672.1	3.73e-108	95.19	transcriptional elongation regulator MINIYO [Cucurbita maxima]	[more]

BLAST of Csor.00g230160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXF4	4.53e-112	97.86	transcriptional elongation regulator MINIYO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1J5I2	1.81e-108	95.19	transcriptional elongation regulator MINIYO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A5D3DK37	4.36e-84	76.47	Transcriptional elongation regulator MINIYO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KAE9	9.70e-81	73.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124150 PE=3 SV=1	[more]
A0A1S3BKC4	2.74e-80	76.47	LOW QUALITY PROTEIN: transcriptional elongation regulator MINIYO OS=Cucumis melo...	[more]

BLAST of Csor.00g230160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38440.1	1.0e-22	42.86	LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR47605	TRANSCRIPTIONAL ELONGATION REGULATOR MINIYO	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g230160.m01	Csor.00g230160.m01	mRNA